Result of FASTA (ccds) for
pFN21AB8343
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8343, 228 aa
1>>>pF1KB8343 228 - 228 aa - 228 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0311+/-0.000747; mu= 15.7249+/- 0.045
mean_var=69.2415+/-13.815, 0's: 0 Z-trim(108.8): 33 B-trim: 2 in 1/49
Lambda= 0.154131
statistics sampled from 10418 (10450) to 10418 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.708), E-opt: 0.2 (0.321), width: 16
Scan time: 1.770
The best scores are: opt bits E(32554)
CCDS60324.1 SLAMF7 gene_id:57823|Hs108|chr1 ( 228) 1558 355.0 2.3e-98
CCDS1209.1 SLAMF7 gene_id:57823|Hs108|chr1 ( 335) 1440 328.9 2.4e-90
CCDS60321.1 SLAMF7 gene_id:57823|Hs108|chr1 ( 296) 911 211.2 5.7e-55
CCDS72957.1 SLAMF7 gene_id:57823|Hs108|chr1 ( 241) 832 193.6 9.4e-50
CCDS72956.1 SLAMF7 gene_id:57823|Hs108|chr1 ( 149) 760 177.4 4.3e-45
CCDS60325.1 SLAMF7 gene_id:57823|Hs108|chr1 ( 188) 760 177.5 5.1e-45
CCDS60322.1 SLAMF7 gene_id:57823|Hs108|chr1 ( 204) 535 127.5 6.3e-30
CCDS81388.1 CD84 gene_id:8832|Hs108|chr1 ( 339) 323 80.5 1.5e-15
CCDS53396.1 CD84 gene_id:8832|Hs108|chr1 ( 345) 318 79.4 3.2e-15
CCDS1191.1 SLAMF9 gene_id:89886|Hs108|chr1 ( 289) 270 68.7 4.5e-12
CCDS65695.1 LY9 gene_id:4063|Hs108|chr1 ( 641) 273 69.6 5.3e-12
CCDS30916.1 LY9 gene_id:4063|Hs108|chr1 ( 655) 273 69.6 5.4e-12
CCDS1206.1 CD84 gene_id:8832|Hs108|chr1 ( 328) 261 66.7 2e-11
CCDS53397.1 CD84 gene_id:8832|Hs108|chr1 ( 272) 259 66.2 2.4e-11
CCDS53395.1 CD84 gene_id:8832|Hs108|chr1 ( 214) 256 65.5 3.1e-11
CCDS1205.1 SLAMF6 gene_id:114836|Hs108|chr1 ( 331) 258 66.1 3.2e-11
CCDS53393.1 SLAMF6 gene_id:114836|Hs108|chr1 ( 221) 252 64.6 5.9e-11
CCDS53394.1 SLAMF6 gene_id:114836|Hs108|chr1 ( 332) 253 64.9 6.9e-11
>>CCDS60324.1 SLAMF7 gene_id:57823|Hs108|chr1 (228 aa)
initn: 1558 init1: 1558 opt: 1558 Z-score: 1879.5 bits: 355.0 E(32554): 2.3e-98
Smith-Waterman score: 1558; 100.0% identity (100.0% similar) in 228 aa overlap (1-228:1-228)
10 20 30 40 50 60
pF1KB8 MAGSPTCLTLIYILWQLTEHLSKPKVTMGLQSNKNGTCVTNLTCCMEHGEEDVIYTWKAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MAGSPTCLTLIYILWQLTEHLSKPKVTMGLQSNKNGTCVTNLTCCMEHGEEDVIYTWKAL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 GQAANESHNGSILPISWRWGESDMTFICVARNPVSRNFSSPILARKLCEGAADDPDSSMV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 GQAANESHNGSILPISWRWGESDMTFICVARNPVSRNFSSPILARKLCEGAADDPDSSMV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LLCLLLVPLLLSLFVLGLFLWFLKRERQEEYIEEKKRVDICRETPNICPHSGENTEYDTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 LLCLLLVPLLLSLFVLGLFLWFLKRERQEEYIEEKKRVDICRETPNICPHSGENTEYDTI
130 140 150 160 170 180
190 200 210 220
pF1KB8 PHTNRTILKEDPANTVYSTVEIPKKMENPHSLLTMPDTPRLFAYENVI
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 PHTNRTILKEDPANTVYSTVEIPKKMENPHSLLTMPDTPRLFAYENVI
190 200 210 220
>>CCDS1209.1 SLAMF7 gene_id:57823|Hs108|chr1 (335 aa)
initn: 1544 init1: 1435 opt: 1440 Z-score: 1735.3 bits: 328.9 E(32554): 2.4e-90
Smith-Waterman score: 1440; 97.7% identity (99.1% similar) in 217 aa overlap (12-228:120-335)
10 20 30 40
pF1KB8 MAGSPTCLTLIYILWQLTEHLSKPKVTMGLQSNKNGTCVTN
:.: .. :::::::::::::::::::::::
CCDS12 LKLSKLKKNDSGIYYVGIYSSSLQQPSTQEYVL-HVYEHLSKPKVTMGLQSNKNGTCVTN
90 100 110 120 130 140
50 60 70 80 90 100
pF1KB8 LTCCMEHGEEDVIYTWKALGQAANESHNGSILPISWRWGESDMTFICVARNPVSRNFSSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LTCCMEHGEEDVIYTWKALGQAANESHNGSILPISWRWGESDMTFICVARNPVSRNFSSP
150 160 170 180 190 200
110 120 130 140 150 160
pF1KB8 ILARKLCEGAADDPDSSMVLLCLLLVPLLLSLFVLGLFLWFLKRERQEEYIEEKKRVDIC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ILARKLCEGAADDPDSSMVLLCLLLVPLLLSLFVLGLFLWFLKRERQEEYIEEKKRVDIC
210 220 230 240 250 260
170 180 190 200 210 220
pF1KB8 RETPNICPHSGENTEYDTIPHTNRTILKEDPANTVYSTVEIPKKMENPHSLLTMPDTPRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RETPNICPHSGENTEYDTIPHTNRTILKEDPANTVYSTVEIPKKMENPHSLLTMPDTPRL
270 280 290 300 310 320
pF1KB8 FAYENVI
:::::::
CCDS12 FAYENVI
330
>>CCDS60321.1 SLAMF7 gene_id:57823|Hs108|chr1 (296 aa)
initn: 1015 init1: 906 opt: 911 Z-score: 1100.4 bits: 211.2 E(32554): 5.7e-55
Smith-Waterman score: 911; 96.4% identity (98.6% similar) in 139 aa overlap (12-150:120-257)
10 20 30 40
pF1KB8 MAGSPTCLTLIYILWQLTEHLSKPKVTMGLQSNKNGTCVTN
:.: .. :::::::::::::::::::::::
CCDS60 LKLSKLKKNDSGIYYVGIYSSSLQQPSTQEYVL-HVYEHLSKPKVTMGLQSNKNGTCVTN
90 100 110 120 130 140
50 60 70 80 90 100
pF1KB8 LTCCMEHGEEDVIYTWKALGQAANESHNGSILPISWRWGESDMTFICVARNPVSRNFSSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 LTCCMEHGEEDVIYTWKALGQAANESHNGSILPISWRWGESDMTFICVARNPVSRNFSSP
150 160 170 180 190 200
110 120 130 140 150 160
pF1KB8 ILARKLCEGAADDPDSSMVLLCLLLVPLLLSLFVLGLFLWFLKRERQEEYIEEKKRVDIC
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 ILARKLCEGAADDPDSSMVLLCLLLVPLLLSLFVLGLFLWFLKRERQEENNPKGRSSKYG
210 220 230 240 250 260
170 180 190 200 210 220
pF1KB8 RETPNICPHSGENTEYDTIPHTNRTILKEDPANTVYSTVEIPKKMENPHSLLTMPDTPRL
CCDS60 LLHCGNTEKDGKSPLTAHDARHTKAICL
270 280 290
>>CCDS72957.1 SLAMF7 gene_id:57823|Hs108|chr1 (241 aa)
initn: 828 init1: 828 opt: 832 Z-score: 1006.7 bits: 193.6 E(32554): 9.4e-50
Smith-Waterman score: 1522; 94.6% identity (94.6% similar) in 241 aa overlap (1-228:1-241)
10 20 30 40 50 60
pF1KB8 MAGSPTCLTLIYILWQLTEHLSKPKVTMGLQSNKNGTCVTNLTCCMEHGEEDVIYTWKAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 MAGSPTCLTLIYILWQLTEHLSKPKVTMGLQSNKNGTCVTNLTCCMEHGEEDVIYTWKAL
10 20 30 40 50 60
70 80 90 100 110
pF1KB8 GQAANESHNGSILPISWRWGESDMTFICVARNPVSRNFSSPILARKLCEG----------
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 GQAANESHNGSILPISWRWGESDMTFICVARNPVSRNFSSPILARKLCEGDCLSPLHRRL
70 80 90 100 110 120
120 130 140 150 160
pF1KB8 ---AADDPDSSMVLLCLLLVPLLLSLFVLGLFLWFLKRERQEEYIEEKKRVDICRETPNI
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 CPGAADDPDSSMVLLCLLLVPLLLSLFVLGLFLWFLKRERQEEYIEEKKRVDICRETPNI
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB8 CPHSGENTEYDTIPHTNRTILKEDPANTVYSTVEIPKKMENPHSLLTMPDTPRLFAYENV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 CPHSGENTEYDTIPHTNRTILKEDPANTVYSTVEIPKKMENPHSLLTMPDTPRLFAYENV
190 200 210 220 230 240
pF1KB8 I
:
CCDS72 I
>>CCDS72956.1 SLAMF7 gene_id:57823|Hs108|chr1 (149 aa)
initn: 760 init1: 760 opt: 760 Z-score: 923.0 bits: 177.4 E(32554): 4.3e-45
Smith-Waterman score: 760; 100.0% identity (100.0% similar) in 109 aa overlap (1-109:1-109)
10 20 30 40 50 60
pF1KB8 MAGSPTCLTLIYILWQLTEHLSKPKVTMGLQSNKNGTCVTNLTCCMEHGEEDVIYTWKAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 MAGSPTCLTLIYILWQLTEHLSKPKVTMGLQSNKNGTCVTNLTCCMEHGEEDVIYTWKAL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 GQAANESHNGSILPISWRWGESDMTFICVARNPVSRNFSSPILARKLCEGAADDPDSSMV
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 GQAANESHNGSILPISWRWGESDMTFICVARNPVSRNFSSPILARKLCEENNPKGRSSKY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LLCLLLVPLLLSLFVLGLFLWFLKRERQEEYIEEKKRVDICRETPNICPHSGENTEYDTI
CCDS72 GLLHCGNTEKDGKSPLTAHDARHTKAICL
130 140
>>CCDS60325.1 SLAMF7 gene_id:57823|Hs108|chr1 (188 aa)
initn: 760 init1: 760 opt: 760 Z-score: 921.6 bits: 177.5 E(32554): 5.1e-45
Smith-Waterman score: 1205; 82.5% identity (82.5% similar) in 228 aa overlap (1-228:1-188)
10 20 30 40 50 60
pF1KB8 MAGSPTCLTLIYILWQLTEHLSKPKVTMGLQSNKNGTCVTNLTCCMEHGEEDVIYTWKAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MAGSPTCLTLIYILWQLTEHLSKPKVTMGLQSNKNGTCVTNLTCCMEHGEEDVIYTWKAL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 GQAANESHNGSILPISWRWGESDMTFICVARNPVSRNFSSPILARKLCEGAADDPDSSMV
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 GQAANESHNGSILPISWRWGESDMTFICVARNPVSRNFSSPILARKLCE-----------
70 80 90 100
130 140 150 160 170 180
pF1KB8 LLCLLLVPLLLSLFVLGLFLWFLKRERQEEYIEEKKRVDICRETPNICPHSGENTEYDTI
:::::::::::::::::::::::::::::::
CCDS60 -----------------------------EYIEEKKRVDICRETPNICPHSGENTEYDTI
110 120 130 140
190 200 210 220
pF1KB8 PHTNRTILKEDPANTVYSTVEIPKKMENPHSLLTMPDTPRLFAYENVI
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 PHTNRTILKEDPANTVYSTVEIPKKMENPHSLLTMPDTPRLFAYENVI
150 160 170 180
>>CCDS60322.1 SLAMF7 gene_id:57823|Hs108|chr1 (204 aa)
initn: 644 init1: 535 opt: 535 Z-score: 650.7 bits: 127.5 E(32554): 6.3e-30
Smith-Waterman score: 598; 49.8% identity (65.9% similar) in 229 aa overlap (1-228:1-204)
10 20 30 40 50 60
pF1KB8 MAGSPTCLTLIYILWQLTEHLSKPKVTMGLQSNKNGTCVTNLTCCMEHGEEDVIYTWKAL
:::::::::::::::::: .. : : .. .:. . : ... .....:...
CCDS60 MAGSPTCLTLIYILWQLTGSAASGPVKE-LVGSVGGAVTFPLKSKVKQ-VDSIVWTFNTT
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 GQAANESHNGSILPISWRWGESDMTFICVARNPVSRNFSSPILARKLCEGAADDPDSSMV
.. . ..:.:. . :: .: . . :: . .: .:
CCDS60 PLVTIQPEGGTII-------------VTQNRNRERVDFPDGGYSLKLSKLKKNDSGIYYV
60 70 80 90 100
130 140 150 160 170
pF1KB8 -LLCLLLVPLLLSLFVLGLFLWFLKRERQEEYIEEKKRVDICRETPNICPHSGENTEYDT
. : . .:: .. ::::::::::::::::::::::::::::::
CCDS60 GIYSSSLQQPSTQEYVLHVY----------EYIEEKKRVDICRETPNICPHSGENTEYDT
110 120 130 140 150
180 190 200 210 220
pF1KB8 IPHTNRTILKEDPANTVYSTVEIPKKMENPHSLLTMPDTPRLFAYENVI
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 IPHTNRTILKEDPANTVYSTVEIPKKMENPHSLLTMPDTPRLFAYENVI
160 170 180 190 200
>>CCDS81388.1 CD84 gene_id:8832|Hs108|chr1 (339 aa)
initn: 294 init1: 151 opt: 323 Z-score: 392.9 bits: 80.5 E(32554): 1.5e-15
Smith-Waterman score: 323; 33.6% identity (59.1% similar) in 235 aa overlap (5-228:117-339)
10 20 30
pF1KB8 MAGSPTCLTLIYILWQLTEHLSKPKVTMGLQSNK
: : : : :. ..:.:::.:..:...
CCDS81 ALGPNYNLVISDLRMEDAGDYKADINTQADPYTTTKRYNL-QIYRRLGKPKITQSLMASV
90 100 110 120 130 140
40 50 60 70 80 90
pF1KB8 NGTCVTNLTCCMEHGEEDVIYTWKALGQAANESHNGSILPISWRWGESDMTFICVARNPV
:.:: ..::: .:. :..: :.:. ::. .:..: : ....:. :.:.:::
CCDS81 NSTCNVTLTCSVEKEEKNVTYNWSPLGE------EGNVLQIFQTPEDQELTYTCTAQNPV
150 160 170 180 190
100 110 120 130 140
pF1KB8 SRNFSSPILARKLCEGAADDPDSSMV-LLCLLLVPLLLSLFVLGLFLWFLKRERQ-----
: : :. : ::.:: : . . :: .: . .:: :.. ..::. : ..::
CCDS81 SNN-SDSISARQLCADIAMGFRTHHTGLLSVLAMFFLLVLILSSVFLFRLFKRRQGSCLN
200 210 220 230 240 250
150 160 170 180 190 200
pF1KB8 ----EEYIEEKKRV-DICRETPNICPHSGENTEYDTIPHTNRTILKEDPANTVYSTVEIP
. : :: . . : : .:. :: : ... ::.:.::::: :..
CCDS81 TFTKNPYAASKKTIYTYIMASRNTQP--AESRIYDEILQSKVLPSKEEPVNTVYSEVQFA
260 270 280 290 300 310
210 220
pF1KB8 KKMENPHSLLTMPDTPRLFAYENVI
:: . . . : : .:: ::
CCDS81 DKMGKASTQDSKP--PGTSSYEIVI
320 330
>>CCDS53396.1 CD84 gene_id:8832|Hs108|chr1 (345 aa)
initn: 294 init1: 151 opt: 318 Z-score: 386.8 bits: 79.4 E(32554): 3.2e-15
Smith-Waterman score: 318; 32.2% identity (60.3% similar) in 239 aa overlap (5-228:117-345)
10 20 30
pF1KB8 MAGSPTCLTLIYILWQLTEHLSKPKVTMGLQSNK
: : : : :. ..:.:::.:..:...
CCDS53 ALGPNYNLVISDLRMEDAGDYKADINTQADPYTTTKRYNL-QIYRRLGKPKITQSLMASV
90 100 110 120 130 140
40 50 60 70 80 90
pF1KB8 NGTCVTNLTCCMEHGEEDVIYTWKALGQAANESHNGSILPISWRWGESDMTFICVARNPV
:.:: ..::: .:. :..: :.:. ::. .:..: : ....:. :.:.:::
CCDS53 NSTCNVTLTCSVEKEEKNVTYNWSPLGE------EGNVLQIFQTPEDQELTYTCTAQNPV
150 160 170 180 190
100 110 120 130 140 150
pF1KB8 SRNFSSPILARKLCEGAADDPDSSMV-LLCLLLVPLLLSLFVLGLFLWFLKRERQEEYIE
: : :. : ::.:: : . . :: .: . .:: :.. ..::. : ..:: . .
CCDS53 SNN-SDSISARQLCADIAMGFRTHHTGLLSVLAMFFLLVLILSSVFLFRLFKRRQGRIFP
200 210 220 230 240 250
160 170 180 190
pF1KB8 EKKRVDICRETPNICPH--------SGENTE------YDTIPHTNRTILKEDPANTVYST
: . .. ..: . ...::. :: : ... ::.:.:::::
CCDS53 EGSCLNTFTKNPYAASKKTIYTYIMASRNTQPAESRIYDEILQSKVLPSKEEPVNTVYSE
260 270 280 290 300 310
200 210 220
pF1KB8 VEIPKKMENPHSLLTMPDTPRLFAYENVI
:.. :: . . . : : .:: ::
CCDS53 VQFADKMGKASTQDSKP--PGTSSYEIVI
320 330 340
>>CCDS1191.1 SLAMF9 gene_id:89886|Hs108|chr1 (289 aa)
initn: 159 init1: 106 opt: 270 Z-score: 330.2 bits: 68.7 E(32554): 4.5e-12
Smith-Waterman score: 270; 31.4% identity (66.4% similar) in 140 aa overlap (21-156:133-270)
10 20 30 40 50
pF1KB8 MAGSPTCLTLIYILWQLTEHLSKPKVTMGLQSNKNGTCVTNLTCCMEHGE
::.:..:....:. .:.: .:.: .:..
CCDS11 EDSGLYQAQVNLRTSQISTMQQYNICVYRWLSEPQITVNFESSGEGACSMSLVCSVEKAG
110 120 130 140 150 160
60 70 80 90 100 110
pF1KB8 EDVIYTWKALGQAANESHNGSILPISWRWGESDMTFICVARNPVSRNFSSPILARKLCEG
:. :.: . :... :.: .: ::: :.: ... : : ::.: : :: .
CCDS11 MDMTYSWLSRGDSTYTFHEGPVLSTSWRPGDSALSYTCRANNPISNVSSCPIPDGPFYAD
170 180 190 200 210 220
120 130 140 150 160
pF1KB8 ---AADDPDSSMVLLCL-LLVPLLLSLFVLGLFLWFLKRERQEEYIEEKKRVDICRETPN
:.. :.... :: ::. ::: ....: :: .. ...... . ::
CCDS11 PNYASEKPSTAFCLLAKGLLIFLLLVILAMG--LWVIRVQKRHKMPRMKKLMRNRMKLRK
230 240 250 260 270 280
170 180 190 200 210 220
pF1KB8 ICPHSGENTEYDTIPHTNRTILKEDPANTVYSTVEIPKKMENPHSLLTMPDTPRLFAYEN
CCDS11 EAKPGSSPA
228 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 03:37:55 2016 done: Mon Nov 7 03:37:55 2016
Total Scan time: 1.770 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]