FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8320, 129 aa 1>>>pF1KB8320 129 - 129 aa - 129 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1769+/-0.000798; mu= 11.4888+/- 0.048 mean_var=68.4808+/-13.914, 0's: 0 Z-trim(108.2): 136 B-trim: 328 in 1/47 Lambda= 0.154985 statistics sampled from 9869 (10029) to 9869 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.703), E-opt: 0.2 (0.308), width: 16 Scan time: 1.010 The best scores are: opt bits E(32554) CCDS46305.1 RAB1A gene_id:5861|Hs108|chr2 ( 129) 830 193.9 2.2e-50 CCDS46306.1 RAB1A gene_id:5861|Hs108|chr2 ( 205) 426 103.7 5.1e-23 CCDS31613.1 RAB1B gene_id:81876|Hs108|chr11 ( 201) 390 95.7 1.3e-20 CCDS10183.1 RAB8B gene_id:51762|Hs108|chr15 ( 207) 312 78.3 2.4e-15 CCDS12339.1 RAB8A gene_id:4218|Hs108|chr19 ( 207) 308 77.4 4.5e-15 CCDS1058.1 RAB13 gene_id:5872|Hs108|chr1 ( 203) 298 75.1 2.1e-14 CCDS53836.1 RAB35 gene_id:11021|Hs108|chr12 ( 152) 295 74.4 2.6e-14 CCDS41846.1 RAB35 gene_id:11021|Hs108|chr12 ( 201) 295 74.4 3.3e-14 CCDS1720.1 RAB10 gene_id:10890|Hs108|chr2 ( 200) 288 72.9 9.7e-14 CCDS9768.1 RAB15 gene_id:376267|Hs108|chr14 ( 208) 275 70.0 7.5e-13 CCDS76691.1 RAB15 gene_id:376267|Hs108|chr14 ( 212) 275 70.0 7.6e-13 >>CCDS46305.1 RAB1A gene_id:5861|Hs108|chr2 (129 aa) initn: 830 init1: 830 opt: 830 Z-score: 1017.9 bits: 193.9 E(32554): 2.2e-50 Smith-Waterman score: 830; 100.0% identity (100.0% similar) in 129 aa overlap (1-129:1-129) 10 20 30 40 50 60 pF1KB8 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 KLQIEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 KLQIEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTP 70 80 90 100 110 120 pF1KB8 VKQSGGGCC ::::::::: CCDS46 VKQSGGGCC >>CCDS46306.1 RAB1A gene_id:5861|Hs108|chr2 (205 aa) initn: 816 init1: 423 opt: 426 Z-score: 526.8 bits: 103.7 E(32554): 5.1e-23 Smith-Waterman score: 426; 71.0% identity (84.0% similar) in 100 aa overlap (30-129:111-205) 10 20 30 40 50 pF1KB8 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKT :.:... .. ... :. . . .: : CCDS46 YRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN-KCDLTTKKV-VDYTT 90 100 110 120 130 60 70 80 90 100 110 pF1KB8 IKLQIEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQST : ::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 AK---EFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQST 140 150 160 170 180 190 120 pF1KB8 PVKQSGGGCC :::::::::: CCDS46 PVKQSGGGCC 200 >-- initn: 416 init1: 407 opt: 407 Z-score: 503.8 bits: 99.5 E(32554): 9.6e-22 Smith-Waterman score: 407; 100.0% identity (100.0% similar) in 64 aa overlap (1-64:1-64) 10 20 30 40 50 60 pF1KB8 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 KLQIEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTP :::: CCDS46 KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKL 70 80 90 100 110 120 >>CCDS31613.1 RAB1B gene_id:81876|Hs108|chr11 (201 aa) initn: 641 init1: 390 opt: 390 Z-score: 483.4 bits: 95.7 E(32554): 1.3e-20 Smith-Waterman score: 390; 100.0% identity (100.0% similar) in 61 aa overlap (4-64:1-61) 10 20 30 40 50 60 pF1KB8 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI 10 20 30 40 50 70 80 90 100 110 120 pF1KB8 KLQIEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTP :::: CCDS31 KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKL 60 70 80 90 100 110 >-- initn: 275 init1: 265 opt: 367 Z-score: 455.6 bits: 90.5 E(32554): 4.7e-19 Smith-Waterman score: 367; 61.0% identity (83.0% similar) in 100 aa overlap (30-129:108-201) 10 20 30 40 50 pF1KB8 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKT :.:... .. ... . :. . . .:. : CCDS31 YRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKS-DLTTKKV-VDNTT 80 90 100 110 120 130 60 70 80 90 100 110 pF1KB8 IKLQIEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQST : :::::::::::::::::::::::.::::::::::::::::..:: :. :.::.:: CCDS31 AK---EFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGG-ERPNLKIDST 140 150 160 170 180 190 120 pF1KB8 PVKQSGGGCC ::: .::::: CCDS31 PVKPAGGGCC 200 >>CCDS10183.1 RAB8B gene_id:51762|Hs108|chr15 (207 aa) initn: 402 init1: 312 opt: 312 Z-score: 389.0 bits: 78.3 E(32554): 2.4e-15 Smith-Waterman score: 312; 75.4% identity (91.8% similar) in 61 aa overlap (4-64:1-61) 10 20 30 40 50 60 pF1KB8 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI : :::::::::::::::::.:::.::..:... ..:::::.:::::::::::: : CCDS10 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKI 10 20 30 40 50 70 80 90 100 110 120 pF1KB8 KLQIEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTP :::: CCDS10 KLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERM 60 70 80 90 100 110 >>CCDS12339.1 RAB8A gene_id:4218|Hs108|chr19 (207 aa) initn: 423 init1: 308 opt: 308 Z-score: 384.1 bits: 77.4 E(32554): 4.5e-15 Smith-Waterman score: 308; 73.8% identity (91.8% similar) in 61 aa overlap (4-64:1-61) 10 20 30 40 50 60 pF1KB8 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI : :::::::::::::::::.:.:.::..:... ..:::::.:::::::::::: : CCDS12 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRI 10 20 30 40 50 70 80 90 100 110 120 pF1KB8 KLQIEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTP :::: CCDS12 KLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKM 60 70 80 90 100 110 >>CCDS1058.1 RAB13 gene_id:5872|Hs108|chr1 (203 aa) initn: 365 init1: 294 opt: 298 Z-score: 372.2 bits: 75.1 E(32554): 2.1e-14 Smith-Waterman score: 298; 67.2% identity (93.4% similar) in 61 aa overlap (4-64:1-61) 10 20 30 40 50 60 pF1KB8 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI : ::.::::::::::::::.::..:::.:.....::::::.::::::....:: : CCDS10 MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKI 10 20 30 40 50 70 80 90 100 110 120 pF1KB8 KLQIEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTP :::. CCDS10 KLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERL 60 70 80 90 100 110 >>CCDS53836.1 RAB35 gene_id:11021|Hs108|chr12 (152 aa) initn: 325 init1: 295 opt: 295 Z-score: 370.4 bits: 74.4 E(32554): 2.6e-14 Smith-Waterman score: 295; 72.1% identity (91.8% similar) in 61 aa overlap (4-64:1-61) 10 20 30 40 50 60 pF1KB8 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI : .::.:::::.::::::::: :::::::.:.. :::.::::::::::.:..:. . CCDS53 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKV 10 20 30 40 50 70 80 90 100 110 120 pF1KB8 KLQIEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTP :::: CCDS53 KLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRIL 60 70 80 90 100 110 >>CCDS41846.1 RAB35 gene_id:11021|Hs108|chr12 (201 aa) initn: 375 init1: 295 opt: 295 Z-score: 368.6 bits: 74.4 E(32554): 3.3e-14 Smith-Waterman score: 295; 72.1% identity (91.8% similar) in 61 aa overlap (4-64:1-61) 10 20 30 40 50 60 pF1KB8 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI : .::.:::::.::::::::: :::::::.:.. :::.::::::::::.:..:. . CCDS41 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKV 10 20 30 40 50 70 80 90 100 110 120 pF1KB8 KLQIEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTP :::: CCDS41 KLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRIL 60 70 80 90 100 110 >>CCDS1720.1 RAB10 gene_id:10890|Hs108|chr2 (200 aa) initn: 399 init1: 288 opt: 288 Z-score: 360.2 bits: 72.9 E(32554): 9.7e-14 Smith-Waterman score: 288; 71.9% identity (94.7% similar) in 57 aa overlap (8-64:6-62) 10 20 30 40 50 60 pF1KB8 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI :: ::::::::::::::.:.:.::.::... ..:::::.::::.:.::.:: : CCDS17 MAKKTYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKI 10 20 30 40 50 70 80 90 100 110 120 pF1KB8 KLQIEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTP :::: CCDS17 KLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERM 60 70 80 90 100 110 >>CCDS9768.1 RAB15 gene_id:376267|Hs108|chr14 (208 aa) initn: 271 init1: 271 opt: 275 Z-score: 344.2 bits: 70.0 E(32554): 7.5e-13 Smith-Waterman score: 275; 57.1% identity (79.2% similar) in 77 aa overlap (4-80:1-75) 10 20 30 40 50 60 pF1KB8 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI : .:: ::.:::::::::::.::: ::.:. . :.:::::::::..:::.:: : CCDS97 MAKQYDVLFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDG--I 10 20 30 40 50 70 80 90 100 110 120 pF1KB8 KLQIEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVKIQSTP :..:.. :. : .: .: CCDS97 KVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEVGDATSL 60 70 80 90 100 110 129 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 11:43:18 2016 done: Fri Nov 4 11:43:18 2016 Total Scan time: 1.010 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]