Result of FASTA (omim) for
pFN21AB8312
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8312, 142 aa
1>>>pF1KB8312 142 - 142 aa - 142 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0903+/-0.000256; mu= 13.5104+/- 0.016
mean_var=70.6096+/-13.768, 0's: 0 Z-trim(120.9): 35 B-trim: 0 in 0/57
Lambda= 0.152631
statistics sampled from 36774 (36809) to 36774 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.805), E-opt: 0.2 (0.432), width: 16
Scan time: 4.690
The best scores are: opt bits E(85289)
NP_001159 (OMIM: 603352) baculoviral IAP repeat-co ( 142) 996 227.1 7.3e-60
NP_001012271 (OMIM: 603352) baculoviral IAP repeat ( 165) 575 134.5 6.6e-32
NP_001012270 (OMIM: 603352) baculoviral IAP repeat ( 137) 574 134.2 6.6e-32
NP_004527 (OMIM: 600355) baculoviral IAP repeat-co (1403) 213 55.5 3.4e-07
XP_016860049 (OMIM: 605638) PREDICTED: baculoviral (3983) 215 56.2 5.7e-07
XP_011531307 (OMIM: 605638) PREDICTED: baculoviral (3989) 215 56.2 5.7e-07
XP_016860048 (OMIM: 605638) PREDICTED: baculoviral (4715) 215 56.3 6.5e-07
XP_011531305 (OMIM: 605638) PREDICTED: baculoviral (4779) 215 56.3 6.6e-07
XP_016860047 (OMIM: 605638) PREDICTED: baculoviral (4837) 215 56.3 6.6e-07
XP_005264512 (OMIM: 605638) PREDICTED: baculoviral (4840) 215 56.3 6.6e-07
XP_005264511 (OMIM: 605638) PREDICTED: baculoviral (4847) 215 56.3 6.6e-07
XP_016860046 (OMIM: 605638) PREDICTED: baculoviral (4847) 215 56.3 6.6e-07
XP_006712119 (OMIM: 605638) PREDICTED: baculoviral (4851) 215 56.3 6.6e-07
NP_057336 (OMIM: 605638) baculoviral IAP repeat-co (4857) 215 56.3 6.7e-07
XP_016860045 (OMIM: 605638) PREDICTED: baculoviral (4858) 215 56.3 6.7e-07
XP_005264510 (OMIM: 605638) PREDICTED: baculoviral (4861) 215 56.3 6.7e-07
XP_006712118 (OMIM: 605638) PREDICTED: baculoviral (4864) 215 56.3 6.7e-07
XP_005264509 (OMIM: 605638) PREDICTED: baculoviral (4870) 215 56.3 6.7e-07
XP_005264508 (OMIM: 605638) PREDICTED: baculoviral (4875) 215 56.3 6.7e-07
XP_006712117 (OMIM: 605638) PREDICTED: baculoviral (4878) 215 56.3 6.7e-07
XP_005264507 (OMIM: 605638) PREDICTED: baculoviral (4880) 215 56.3 6.7e-07
XP_005264506 (OMIM: 605638) PREDICTED: baculoviral (4884) 215 56.3 6.7e-07
NP_071444 (OMIM: 605737) baculoviral IAP repeat-co ( 280) 187 49.2 5.2e-06
NP_647478 (OMIM: 605737) baculoviral IAP repeat-co ( 298) 187 49.2 5.5e-06
NP_001243095 (OMIM: 601712) baculoviral IAP repeat ( 569) 172 46.1 8.9e-05
NP_001243092 (OMIM: 601712) baculoviral IAP repeat ( 618) 172 46.2 9.5e-05
NP_001157 (OMIM: 601712) baculoviral IAP repeat-co ( 618) 172 46.2 9.5e-05
NP_001158 (OMIM: 300079,300635,308240) E3 ubiquiti ( 497) 167 45.0 0.00017
XP_011529631 (OMIM: 300079,300635,308240) PREDICTE ( 497) 167 45.0 0.00017
XP_006724817 (OMIM: 300079,300635,308240) PREDICTE ( 497) 167 45.0 0.00017
NP_001191330 (OMIM: 300079,300635,308240) E3 ubiqu ( 497) 167 45.0 0.00017
NP_075043 (OMIM: 600355) baculoviral IAP repeat-co (1241) 170 45.9 0.00022
NP_001156 (OMIM: 601721) baculoviral IAP repeat-co ( 604) 163 44.2 0.00037
NP_892007 (OMIM: 601721) baculoviral IAP repeat-co ( 604) 163 44.2 0.00037
XP_016873132 (OMIM: 601721) PREDICTED: baculoviral ( 604) 163 44.2 0.00037
>>NP_001159 (OMIM: 603352) baculoviral IAP repeat-contai (142 aa)
initn: 996 init1: 996 opt: 996 Z-score: 1195.8 bits: 227.1 E(85289): 7.3e-60
Smith-Waterman score: 996; 99.3% identity (100.0% similar) in 142 aa overlap (1-142:1-142)
10 20 30 40 50 60
pF1KB8 MGAPTLPPAWQPFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGAPTLPPAWQPFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 FKELEGWEPDDDPIEEHKKHSSGCAFLSVKKQFEELTLGEFLKLDRERAKNKIAKETNNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FKELEGWEPDDDPIEEHKKHSSGCAFLSVKKQFEELTLGEFLKLDRERAKNKIAKETNNK
70 80 90 100 110 120
130 140
pF1KB8 KKEFEETAKKVRRAIEQLAAMD
::::::::.:::::::::::::
NP_001 KKEFEETAEKVRRAIEQLAAMD
130 140
>>NP_001012271 (OMIM: 603352) baculoviral IAP repeat-con (165 aa)
initn: 982 init1: 575 opt: 575 Z-score: 693.8 bits: 134.5 E(85289): 6.6e-32
Smith-Waterman score: 940; 85.5% identity (86.1% similar) in 165 aa overlap (1-142:1-165)
10 20 30 40 50 60
pF1KB8 MGAPTLPPAWQPFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGAPTLPPAWQPFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFC
10 20 30 40 50 60
70 80 90
pF1KB8 FKELEGWEPDDDPI-----------------------EEHKKHSSGCAFLSVKKQFEELT
:::::::::::::: :::::::::::::::::::::::
NP_001 FKELEGWEPDDDPIGPGTVAYACNTSTLGGRGGRITREEHKKHSSGCAFLSVKKQFEELT
70 80 90 100 110 120
100 110 120 130 140
pF1KB8 LGEFLKLDRERAKNKIAKETNNKKKEFEETAKKVRRAIEQLAAMD
:::::::::::::::::::::::::::::::.:::::::::::::
NP_001 LGEFLKLDRERAKNKIAKETNNKKKEFEETAEKVRRAIEQLAAMD
130 140 150 160
>>NP_001012270 (OMIM: 603352) baculoviral IAP repeat-con (137 aa)
initn: 574 init1: 574 opt: 574 Z-score: 693.8 bits: 134.2 E(85289): 6.6e-32
Smith-Waterman score: 574; 97.3% identity (100.0% similar) in 75 aa overlap (1-75:1-75)
10 20 30 40 50 60
pF1KB8 MGAPTLPPAWQPFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGAPTLPPAWQPFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 FKELEGWEPDDDPIEEHKKHSSGCAFLSVKKQFEELTLGEFLKLDRERAKNKIAKETNNK
:::::::::::::..
NP_001 FKELEGWEPDDDPMQRKPTIRRKNLRKLRRKCAVPSSSWLPWIEASGRSCLVPEWLHHFQ
70 80 90 100 110 120
>>NP_004527 (OMIM: 600355) baculoviral IAP repeat-contai (1403 aa)
initn: 238 init1: 136 opt: 213 Z-score: 250.1 bits: 55.5 E(85289): 3.4e-07
Smith-Waterman score: 213; 40.5% identity (63.1% similar) in 84 aa overlap (15-97:159-237)
10 20 30 40
pF1KB8 MGAPTLPPAWQPFLKDHRISTFKNWPF-LEGCACTPERMAEAGF
.. :...:.:::: ..: .: ..::::
NP_004 NKDVGNIAKYDIRVKNLKSRLRGGKMRYQEEEARLASFRNWPFYVQGI--SPCVLSEAGF
130 140 150 160 170 180
50 60 70 80 90 100
pF1KB8 IHCPTENEPDLAQCFFCFKELEGWEPDDDPIEEHKKHSSGCAFLSVKKQFEELTLGEFLK
. .. : .::: : : .:: ::: .:: : : :: ::. ::.:
NP_004 VFT---GKQDTVQCFSCGGCLGNWEEGDDPWKEHAKWFPKCEFLRSKKSSEEITQYIQSY
190 200 210 220 230 240
110 120 130 140
pF1KB8 LDRERAKNKIAKETNNKKKEFEETAKKVRRAIEQLAAMD
NP_004 KGFVDITGEHFVNSWVQRELPMASAYCNDSIFAYEELRLDSFKDWPRESAVGVAALAKAG
250 260 270 280 290 300
>--
initn: 182 init1: 125 opt: 170 Z-score: 198.9 bits: 46.0 E(85289): 0.00024
Smith-Waterman score: 170; 33.8% identity (61.2% similar) in 80 aa overlap (18-97:281-355)
10 20 30 40
pF1KB8 MGAPTLPPAWQPFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCP
:...::.:: . : .:.::...
NP_004 GEHFVNSWVQRELPMASAYCNDSIFAYEELRLDSFKDWP--RESAVGVAALAKAGLFYTG
260 270 280 290 300
50 60 70 80 90 100
pF1KB8 TENEPDLAQCFFCFKELEGWEPDDDPIEEHKKHSSGCAFLSVKKQFEELTLGEFLKLDRE
. :..::: : :: :. :::...: . .: ::. :. :.:
NP_004 IK---DIVQCFSCGGCLEKWQEGDDPLDDHTRCFPNCPFLQNMKSSAEVTPDLQSRGELC
310 320 330 340 350 360
110 120 130 140
pF1KB8 RAKNKIAKETNNKKKEFEETAKKVRRAIEQLAAMD
NP_004 ELLETTSESNLEDSIAVGPIVPEMAQGEAQWFQEAKNLNEQLRAAYTSASFRHMSLLDIS
370 380 390 400 410 420
>>XP_016860049 (OMIM: 605638) PREDICTED: baculoviral IAP (3983 aa)
initn: 212 init1: 212 opt: 215 Z-score: 246.1 bits: 56.2 E(85289): 5.7e-07
Smith-Waterman score: 215; 42.3% identity (60.6% similar) in 71 aa overlap (17-87:288-358)
10 20 30 40
pF1KB8 MGAPTLPPAWQPFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHC
.: :: .:: . :. ::.::: :
XP_016 RLSYLLPSARPELGVGPGRSVDRSLMYSEANRRETFTSWPHVGYRWAQPDPMAQAGFYHQ
260 270 280 290 300 310
50 60 70 80 90 100
pF1KB8 PTENEPDLAQCFFCFKELEGWEPDDDPIEEHKKHSSGCAFLSVKKQFEELTLGEFLKLDR
:. . : :.:: : : ::: :.: ::..:: .: :.
XP_016 PASSGDDRAMCFTCSVCLVCWEPTDEPWSEHERHSPNCPFVKGEHTQNVPLSVTLATSPA
320 330 340 350 360 370
110 120 130 140
pF1KB8 ERAKNKIAKETNNKKKEFEETAKKVRRAIEQLAAMD
XP_016 QFPCTDGTDRISCFGSGSCPHFLAAATKRGKICIWDVSKLMKVHLKFEINAYDPAIVQQL
380 390 400 410 420 430
>>XP_011531307 (OMIM: 605638) PREDICTED: baculoviral IAP (3989 aa)
initn: 212 init1: 212 opt: 215 Z-score: 246.1 bits: 56.2 E(85289): 5.7e-07
Smith-Waterman score: 215; 42.3% identity (60.6% similar) in 71 aa overlap (17-87:288-358)
10 20 30 40
pF1KB8 MGAPTLPPAWQPFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHC
.: :: .:: . :. ::.::: :
XP_011 RLSYLLPSARPELGVGPGRSVDRSLMYSEANRRETFTSWPHVGYRWAQPDPMAQAGFYHQ
260 270 280 290 300 310
50 60 70 80 90 100
pF1KB8 PTENEPDLAQCFFCFKELEGWEPDDDPIEEHKKHSSGCAFLSVKKQFEELTLGEFLKLDR
:. . : :.:: : : ::: :.: ::..:: .: :.
XP_011 PASSGDDRAMCFTCSVCLVCWEPTDEPWSEHERHSPNCPFVKGEHTQNVPLSVTLATSPA
320 330 340 350 360 370
110 120 130 140
pF1KB8 ERAKNKIAKETNNKKKEFEETAKKVRRAIEQLAAMD
XP_011 QFPCTDGTDRISCFGSGSCPHFLAAATKRGKICIWDVSKLMKVHLKFEINAYDPAIVQQL
380 390 400 410 420 430
>>XP_016860048 (OMIM: 605638) PREDICTED: baculoviral IAP (4715 aa)
initn: 212 init1: 212 opt: 215 Z-score: 245.1 bits: 56.3 E(85289): 6.5e-07
Smith-Waterman score: 215; 42.3% identity (60.6% similar) in 71 aa overlap (17-87:288-358)
10 20 30 40
pF1KB8 MGAPTLPPAWQPFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHC
.: :: .:: . :. ::.::: :
XP_016 RLSYLLPSARPELGVGPGRSVDRSLMYSEANRRETFTSWPHVGYRWAQPDPMAQAGFYHQ
260 270 280 290 300 310
50 60 70 80 90 100
pF1KB8 PTENEPDLAQCFFCFKELEGWEPDDDPIEEHKKHSSGCAFLSVKKQFEELTLGEFLKLDR
:. . : :.:: : : ::: :.: ::..:: .: :.
XP_016 PASSGDDRAMCFTCSVCLVCWEPTDEPWSEHERHSPNCPFVKGEHTQNVPLSVTLATSPA
320 330 340 350 360 370
110 120 130 140
pF1KB8 ERAKNKIAKETNNKKKEFEETAKKVRRAIEQLAAMD
XP_016 QFPCTDGTDRISCFGSGSCPHFLAAATKRGKICIWDVSKLMKVHLKFEINAYDPAIVQQL
380 390 400 410 420 430
>>XP_011531305 (OMIM: 605638) PREDICTED: baculoviral IAP (4779 aa)
initn: 212 init1: 212 opt: 215 Z-score: 245.0 bits: 56.3 E(85289): 6.6e-07
Smith-Waterman score: 215; 42.3% identity (60.6% similar) in 71 aa overlap (17-87:183-253)
10 20 30 40
pF1KB8 MGAPTLPPAWQPFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHC
.: :: .:: . :. ::.::: :
XP_011 RLSYLLPSARPELGVGPGRSVDRSLMYSEANRRETFTSWPHVGYRWAQPDPMAQAGFYHQ
160 170 180 190 200 210
50 60 70 80 90 100
pF1KB8 PTENEPDLAQCFFCFKELEGWEPDDDPIEEHKKHSSGCAFLSVKKQFEELTLGEFLKLDR
:. . : :.:: : : ::: :.: ::..:: .: :.
XP_011 PASSGDDRAMCFTCSVCLVCWEPTDEPWSEHERHSPNCPFVKGEHTQNVPLSVTLATSPA
220 230 240 250 260 270
110 120 130 140
pF1KB8 ERAKNKIAKETNNKKKEFEETAKKVRRAIEQLAAMD
XP_011 QFPCTDGTDRISCFGSGSCPHFLAAATKRGKICIWDVSKLMKVHLKFEINAYDPAIVQQL
280 290 300 310 320 330
>>XP_016860047 (OMIM: 605638) PREDICTED: baculoviral IAP (4837 aa)
initn: 212 init1: 212 opt: 215 Z-score: 244.9 bits: 56.3 E(85289): 6.6e-07
Smith-Waterman score: 215; 42.3% identity (60.6% similar) in 71 aa overlap (17-87:288-358)
10 20 30 40
pF1KB8 MGAPTLPPAWQPFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHC
.: :: .:: . :. ::.::: :
XP_016 RLSYLLPSARPELGVGPGRSVDRSLMYSEANRRETFTSWPHVGYRWAQPDPMAQAGFYHQ
260 270 280 290 300 310
50 60 70 80 90 100
pF1KB8 PTENEPDLAQCFFCFKELEGWEPDDDPIEEHKKHSSGCAFLSVKKQFEELTLGEFLKLDR
:. . : :.:: : : ::: :.: ::..:: .: :.
XP_016 PASSGDDRAMCFTCSVCLVCWEPTDEPWSEHERHSPNCPFVKGEHTQNVPLSVTLATSPA
320 330 340 350 360 370
110 120 130 140
pF1KB8 ERAKNKIAKETNNKKKEFEETAKKVRRAIEQLAAMD
XP_016 QFPCTDGTDRISCFGSGSCPHFLAAATKRGKICIWDVSKLMKVHLKFEINAYDPAIVQQL
380 390 400 410 420 430
>>XP_005264512 (OMIM: 605638) PREDICTED: baculoviral IAP (4840 aa)
initn: 212 init1: 212 opt: 215 Z-score: 244.9 bits: 56.3 E(85289): 6.6e-07
Smith-Waterman score: 215; 42.3% identity (60.6% similar) in 71 aa overlap (17-87:288-358)
10 20 30 40
pF1KB8 MGAPTLPPAWQPFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHC
.: :: .:: . :. ::.::: :
XP_005 RLSYLLPSARPELGVGPGRSVDRSLMYSEANRRETFTSWPHVGYRWAQPDPMAQAGFYHQ
260 270 280 290 300 310
50 60 70 80 90 100
pF1KB8 PTENEPDLAQCFFCFKELEGWEPDDDPIEEHKKHSSGCAFLSVKKQFEELTLGEFLKLDR
:. . : :.:: : : ::: :.: ::..:: .: :.
XP_005 PASSGDDRAMCFTCSVCLVCWEPTDEPWSEHERHSPNCPFVKGEHTQNVPLSVTLATSPA
320 330 340 350 360 370
110 120 130 140
pF1KB8 ERAKNKIAKETNNKKKEFEETAKKVRRAIEQLAAMD
XP_005 QFPCTDGTDRISCFGSGSCPHFLAAATKRGKICIWDVSKLMKVHLKFEINAYDPAIVQQL
380 390 400 410 420 430
142 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 04:14:40 2016 done: Mon Nov 7 04:14:40 2016
Total Scan time: 4.690 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]