FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8241, 464 aa
  1>>>pF1KB8241 464 - 464 aa - 464 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4302+/-0.000347; mu= 16.8562+/- 0.022
 mean_var=69.1681+/-13.967, 0's: 0 Z-trim(114.4): 7  B-trim: 353 in 1/55
 Lambda= 0.154213
 statistics sampled from 24211 (24218) to 24211 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.656), E-opt: 0.2 (0.284), width:  16
 Scan time:  9.090

The best scores are:                                      opt bits E(85289)
NP_009034 (OMIM: 161015,252010) NADH dehydrogenase ( 464) 3184 717.6 1.8e-206
NP_001159574 (OMIM: 161015,252010) NADH dehydrogen ( 455) 3027 682.6 5.7e-196


>>NP_009034 (OMIM: 161015,252010) NADH dehydrogenase [ub  (464 aa)
 initn: 3184 init1: 3184 opt: 3184  Z-score: 3827.9  bits: 717.6 E(85289): 1.8e-206
Smith-Waterman score: 3184; 100.0% identity (100.0% similar) in 464 aa overlap (1-464:1-464)

               10        20        30        40        50        60
pF1KB8 MLATRRLLGWSLPARVSVRFSGDTTAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGSLSRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 MLATRRLLGWSLPARVSVRFSGDTTAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGSLSRG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 DWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 DWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 EPGTCKDREILRHDPHKLLEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 EPGTCKDREILRHDPHKLLEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 LIGKNACGSGYDFDVFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 LIGKNACGSGYDFDVFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 TVANVETVAVSPTICRRGGTWFAGFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 TVANVETVAVSPTICRRGGTWFAGFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 EKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 EKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 TDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDARPAEIDSLWEISKQIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 TDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDARPAEIDSLWEISKQIE
              370       380       390       400       410       420

              430       440       450       460    
pF1KB8 GHTICALGDGAAWPVQGLIRHFRPELEERMQRFAQQHQARQAAS
       ::::::::::::::::::::::::::::::::::::::::::::
NP_009 GHTICALGDGAAWPVQGLIRHFRPELEERMQRFAQQHQARQAAS
              430       440       450       460    

>>NP_001159574 (OMIM: 161015,252010) NADH dehydrogenase   (455 aa)
 initn: 3027 init1: 3027 opt: 3027  Z-score: 3639.2  bits: 682.6 E(85289): 5.7e-196
Smith-Waterman score: 3100; 98.1% identity (98.1% similar) in 464 aa overlap (1-464:1-455)

               10        20        30        40        50        60
pF1KB8 MLATRRLLGWSLPARVSVRFSGDTTAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGSLSRG
       :::::::::::::::         ::::::::::::::::::::::::::::::::::::
NP_001 MLATRRLLGWSLPAR---------TAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGSLSRG
               10                 20        30        40        50 

               70        80        90       100       110       120
pF1KB8 DWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEG
              60        70        80        90       100       110 

              130       140       150       160       170       180
pF1KB8 EPGTCKDREILRHDPHKLLEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EPGTCKDREILRHDPHKLLEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAG
             120       130       140       150       160       170 

              190       200       210       220       230       240
pF1KB8 LIGKNACGSGYDFDVFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LIGKNACGSGYDFDVFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPT
             180       190       200       210       220       230 

              250       260       270       280       290       300
pF1KB8 TVANVETVAVSPTICRRGGTWFAGFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TVANVETVAVSPTICRRGGTWFAGFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELI
             240       250       260       270       280       290 

              310       320       330       340       350       360
pF1KB8 EKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRS
             300       310       320       330       340       350 

              370       380       390       400       410       420
pF1KB8 TDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDARPAEIDSLWEISKQIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDARPAEIDSLWEISKQIE
             360       370       380       390       400       410 

              430       440       450       460    
pF1KB8 GHTICALGDGAAWPVQGLIRHFRPELEERMQRFAQQHQARQAAS
       ::::::::::::::::::::::::::::::::::::::::::::
NP_001 GHTICALGDGAAWPVQGLIRHFRPELEERMQRFAQQHQARQAAS
             420       430       440       450     




464 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 01:18:52 2016 done: Mon Nov  7 01:18:54 2016
 Total Scan time:  9.090 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]