Result of FASTA (omim) for
pFN21AB8239
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8239, 141 aa
1>>>pF1KB8239 141 - 141 aa - 141 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2851+/-0.000368; mu= 12.4308+/- 0.023
mean_var=76.2299+/-15.619, 0's: 0 Z-trim(113.9): 15 B-trim: 794 in 1/49
Lambda= 0.146897
statistics sampled from 23443 (23457) to 23443 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.666), E-opt: 0.2 (0.275), width: 16
Scan time: 4.760
The best scores are: opt bits E(85289)
NP_001268226 (OMIM: 605107) endothelial differenti ( 141) 892 197.8 4.7e-51
NP_003783 (OMIM: 605107) endothelial differentiati ( 148) 818 182.2 2.6e-46
NP_694880 (OMIM: 605107) endothelial differentiati ( 139) 816 181.7 3.3e-46
NP_001268228 (OMIM: 605107) endothelial differenti ( 130) 519 118.8 2.8e-27
NP_001268227 (OMIM: 605107) endothelial differenti ( 127) 486 111.8 3.5e-25
>>NP_001268226 (OMIM: 605107) endothelial differentiatio (141 aa)
initn: 892 init1: 892 opt: 892 Z-score: 1037.5 bits: 197.8 E(85289): 4.7e-51
Smith-Waterman score: 892; 100.0% identity (100.0% similar) in 141 aa overlap (1-141:1-141)
10 20 30 40 50 60
pF1KB8 MAESDWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNKQHSITKNTAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAESDWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNKQHSITKNTAK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LDRETEELHHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LDRETEELHHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQV
70 80 90 100 110 120
130 140
pF1KB8 LGKIERAIDVGTRSARVLRAQ
:::::::::::::::::::::
NP_001 LGKIERAIDVGTRSARVLRAQ
130 140
>>NP_003783 (OMIM: 605107) endothelial differentiation-r (148 aa)
initn: 818 init1: 818 opt: 818 Z-score: 952.5 bits: 182.2 E(85289): 2.6e-46
Smith-Waterman score: 818; 94.2% identity (96.4% similar) in 137 aa overlap (1-137:1-137)
10 20 30 40 50 60
pF1KB8 MAESDWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNKQHSITKNTAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MAESDWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNKQHSITKNTAK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LDRETEELHHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LDRETEELHHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQV
70 80 90 100 110 120
130 140
pF1KB8 LGKIERAIDVGTRSARVLRAQ
:::::::: . :. .
NP_003 LGKIERAIGLKLRGKDIGKPIEKGPRAK
130 140
>>NP_694880 (OMIM: 605107) endothelial differentiation-r (139 aa)
initn: 813 init1: 813 opt: 816 Z-score: 950.6 bits: 181.7 E(85289): 3.3e-46
Smith-Waterman score: 816; 93.5% identity (95.0% similar) in 139 aa overlap (1-139:1-139)
10 20 30 40 50 60
pF1KB8 MAESDWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNKQHSITKNTAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_694 MAESDWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNKQHSITKNTAK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LDRETEELHHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_694 LDRETEELHHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQV
70 80 90 100 110 120
130 140
pF1KB8 LGKIERAIDVGTRSARVLRAQ
:::::::: . : .:
NP_694 LGKIERAIGECPSTLRRVR
130
>>NP_001268228 (OMIM: 605107) endothelial differentiatio (130 aa)
initn: 697 init1: 509 opt: 519 Z-score: 610.8 bits: 118.8 E(85289): 2.8e-27
Smith-Waterman score: 661; 81.0% identity (83.2% similar) in 137 aa overlap (1-137:1-119)
10 20 30 40 50 60
pF1KB8 MAESDWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNKQHSITKNTAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAESDWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNKQHSITKNTAK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LDRETEELHHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQV
::::::::::::::::::: :::::::::::::::::::::::
NP_001 LDRETEELHHDRVTLEVGK------------------KINEKPQVIADYESGRAIPNNQV
70 80 90 100
130 140
pF1KB8 LGKIERAIDVGTRSARVLRAQ
:::::::: . :. .
NP_001 LGKIERAIGLKLRGKDIGKPIEKGPRAK
110 120 130
>>NP_001268227 (OMIM: 605107) endothelial differentiatio (127 aa)
initn: 674 init1: 486 opt: 486 Z-score: 573.1 bits: 111.8 E(85289): 3.5e-25
Smith-Waterman score: 636; 78.8% identity (81.0% similar) in 137 aa overlap (1-137:1-116)
10 20 30 40 50 60
pF1KB8 MAESDWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNKQHSITKNTAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAESDWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNKQHSITKNTAK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LDRETEELHHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQV
:::::::::::::::: :::::::::::::::::::::::
NP_001 LDRETEELHHDRVTLE---------------------KINEKPQVIADYESGRAIPNNQV
70 80 90
130 140
pF1KB8 LGKIERAIDVGTRSARVLRAQ
:::::::: . :. .
NP_001 LGKIERAIGLKLRGKDIGKPIEKGPRAK
100 110 120
141 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 04:15:13 2016 done: Mon Nov 7 04:15:14 2016
Total Scan time: 4.760 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]