FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8222, 325 aa
  1>>>pF1KB8222 325 - 325 aa - 325 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.5842+/-0.000257; mu= 7.3159+/- 0.016
 mean_var=169.4425+/-33.419, 0's: 0 Z-trim(125.5): 2  B-trim: 72 in 1/56
 Lambda= 0.098529
 statistics sampled from 49450 (49455) to 49450 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.853), E-opt: 0.2 (0.58), width:  16
 Scan time:  9.360

The best scores are:                                      opt bits E(85289)
NP_056207 (OMIM: 605798) neural proliferation diff ( 325) 2283 335.6 8.8e-92


>>NP_056207 (OMIM: 605798) neural proliferation differen  (325 aa)
 initn: 2283 init1: 2283 opt: 2283  Z-score: 1768.8  bits: 335.6 E(85289): 8.8e-92
Smith-Waterman score: 2283; 100.0% identity (100.0% similar) in 325 aa overlap (1-325:1-325)

               10        20        30        40        50        60
pF1KB8 MATPLPPPSPRHLRLLRLLLSGLVLGAALRGAAAGHPDVAACPGSLDCALKRRARCPPGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 MATPLPPPSPRHLRLLRLLLSGLVLGAALRGAAAGHPDVAACPGSLDCALKRRARCPPGA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 HACGPCLQPFQEDQQGLCVPRMRRPPGGGRPQPRLEDEIDFLAQELARKESGHSTPPLPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 HACGPCLQPFQEDQQGLCVPRMRRPPGGGRPQPRLEDEIDFLAQELARKESGHSTPPLPK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 DRQRLPEPATLGFSARGQGLELGLPSTPGTPTPTPHTSLGSPVSSDPVHMSPLEPRGGQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 DRQRLPEPATLGFSARGQGLELGLPSTPGTPTPTPHTSLGSPVSSDPVHMSPLEPRGGQG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 DGLALVLILAFCVAGAAALSVASLCWCRLQREIRLTQKADYATAKAPGSPAAPRISPGDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 DGLALVLILAFCVAGAAALSVASLCWCRLQREIRLTQKADYATAKAPGSPAAPRISPGDQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 RLAQSAEMYHYQHQRQQMLCLERHKEPPKELDTASSDEENEDGDFTVYECPGLAPTGEME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 RLAQSAEMYHYQHQRQQMLCLERHKEPPKELDTASSDEENEDGDFTVYECPGLAPTGEME
              250       260       270       280       290       300

              310       320     
pF1KB8 VRNPLFDHAALSAPLPAPSSPPALP
       :::::::::::::::::::::::::
NP_056 VRNPLFDHAALSAPLPAPSSPPALP
              310       320     




325 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 15:57:20 2016 done: Mon Nov  7 15:57:21 2016
 Total Scan time:  9.360 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]