Result of FASTA (omim) for
pFN21AB8118
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8118, 178 aa
1>>>pF1KB8118 178 - 178 aa - 178 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.1768+/-0.000284; mu= 4.9565+/- 0.018
mean_var=125.7245+/-25.150, 0's: 0 Z-trim(121.6): 8 B-trim: 310 in 1/58
Lambda= 0.114384
statistics sampled from 38374 (38402) to 38374 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.787), E-opt: 0.2 (0.45), width: 16
Scan time: 6.320
The best scores are: opt bits E(85289)
NP_065090 (OMIM: 615210) PEST proteolytic signal-c ( 178) 1154 200.4 1.3e-51
NP_001307327 (OMIM: 615210) PEST proteolytic signa ( 177) 1136 197.4 9.8e-51
NP_001307328 (OMIM: 615210) PEST proteolytic signa ( 158) 924 162.4 3e-40
NP_001307324 (OMIM: 615210) PEST proteolytic signa ( 130) 730 130.4 1.1e-30
XP_016862411 (OMIM: 615210) PREDICTED: PEST proteo ( 129) 712 127.4 8.8e-30
NP_001307330 (OMIM: 615210) PEST proteolytic signa ( 153) 588 107.0 1.5e-23
NP_001307329 (OMIM: 615210) PEST proteolytic signa ( 105) 573 104.4 6e-23
NP_001307326 (OMIM: 615210) PEST proteolytic signa ( 145) 516 95.1 5.3e-20
>>NP_065090 (OMIM: 615210) PEST proteolytic signal-conta (178 aa)
initn: 1154 init1: 1154 opt: 1154 Z-score: 1047.8 bits: 200.4 E(85289): 1.3e-51
Smith-Waterman score: 1154; 100.0% identity (100.0% similar) in 178 aa overlap (1-178:1-178)
10 20 30 40 50 60
pF1KB8 MADGKAGDEKPEKSQRAGAAGGPEEEAEKPVKTKTVSSSNGGESSSRSAEKRSAEEEAAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 MADGKAGDEKPEKSQRAGAAGGPEEEAEKPVKTKTVSSSNGGESSSRSAEKRSAEEEAAD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LPTKPTKISKFGFAIGSQTTKKASAISIKLGSSKPKETVPTLAPKTLSVAAAFNEDEDSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 LPTKPTKISKFGFAIGSQTTKKASAISIKLGSSKPKETVPTLAPKTLSVAAAFNEDEDSE
70 80 90 100 110 120
130 140 150 160 170
pF1KB8 PEEMPPEAKMRMKNIGRDTPTSAGPNSFNKGKHGFSDNQKLWERNIKSHLGNVHDQDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 PEEMPPEAKMRMKNIGRDTPTSAGPNSFNKGKHGFSDNQKLWERNIKSHLGNVHDQDN
130 140 150 160 170
>>NP_001307327 (OMIM: 615210) PEST proteolytic signal-co (177 aa)
initn: 580 init1: 580 opt: 1136 Z-score: 1031.8 bits: 197.4 E(85289): 9.8e-51
Smith-Waterman score: 1136; 99.4% identity (99.4% similar) in 178 aa overlap (1-178:1-177)
10 20 30 40 50 60
pF1KB8 MADGKAGDEKPEKSQRAGAAGGPEEEAEKPVKTKTVSSSNGGESSSRSAEKRSAEEEAAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MADGKAGDEKPEKSQRAGAAGGPEEEAEKPVKTKTVSSSNGGESSSRSAEKRSAEEEAAD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LPTKPTKISKFGFAIGSQTTKKASAISIKLGSSKPKETVPTLAPKTLSVAAAFNEDEDSE
::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::
NP_001 LPTKPTKISKFGFAIGSQTTKKASAISIKLGSS-PKETVPTLAPKTLSVAAAFNEDEDSE
70 80 90 100 110
130 140 150 160 170
pF1KB8 PEEMPPEAKMRMKNIGRDTPTSAGPNSFNKGKHGFSDNQKLWERNIKSHLGNVHDQDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PEEMPPEAKMRMKNIGRDTPTSAGPNSFNKGKHGFSDNQKLWERNIKSHLGNVHDQDN
120 130 140 150 160 170
>>NP_001307328 (OMIM: 615210) PEST proteolytic signal-co (158 aa)
initn: 920 init1: 920 opt: 924 Z-score: 843.5 bits: 162.4 E(85289): 3e-40
Smith-Waterman score: 924; 92.9% identity (96.1% similar) in 155 aa overlap (26-178:4-158)
10 20 30 40 50
pF1KB8 MADGKAGDEKPEKSQRAGAAGGPEEEAEKPVK--TKTVSSSNGGESSSRSAEKRSAEEEA
:. :.. .:. :: :::::::::::::::::::
NP_001 MLFEVAAPINLLSKNSSSCNGGESSSRSAEKRSAEEEA
10 20 30
60 70 80 90 100 110
pF1KB8 ADLPTKPTKISKFGFAIGSQTTKKASAISIKLGSSKPKETVPTLAPKTLSVAAAFNEDED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ADLPTKPTKISKFGFAIGSQTTKKASAISIKLGSSKPKETVPTLAPKTLSVAAAFNEDED
40 50 60 70 80 90
120 130 140 150 160 170
pF1KB8 SEPEEMPPEAKMRMKNIGRDTPTSAGPNSFNKGKHGFSDNQKLWERNIKSHLGNVHDQDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SEPEEMPPEAKMRMKNIGRDTPTSAGPNSFNKGKHGFSDNQKLWERNIKSHLGNVHDQDN
100 110 120 130 140 150
>>NP_001307324 (OMIM: 615210) PEST proteolytic signal-co (130 aa)
initn: 730 init1: 730 opt: 730 Z-score: 671.7 bits: 130.4 E(85289): 1.1e-30
Smith-Waterman score: 730; 100.0% identity (100.0% similar) in 118 aa overlap (1-118:1-118)
10 20 30 40 50 60
pF1KB8 MADGKAGDEKPEKSQRAGAAGGPEEEAEKPVKTKTVSSSNGGESSSRSAEKRSAEEEAAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MADGKAGDEKPEKSQRAGAAGGPEEEAEKPVKTKTVSSSNGGESSSRSAEKRSAEEEAAD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LPTKPTKISKFGFAIGSQTTKKASAISIKLGSSKPKETVPTLAPKTLSVAAAFNEDEDSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LPTKPTKISKFGFAIGSQTTKKASAISIKLGSSKPKETVPTLAPKTLSVAAAFNEDEDGY
70 80 90 100 110 120
130 140 150 160 170
pF1KB8 PEEMPPEAKMRMKNIGRDTPTSAGPNSFNKGKHGFSDNQKLWERNIKSHLGNVHDQDN
NP_001 TNISWTKLLQ
130
>>XP_016862411 (OMIM: 615210) PREDICTED: PEST proteolyti (129 aa)
initn: 573 init1: 573 opt: 712 Z-score: 655.7 bits: 127.4 E(85289): 8.8e-30
Smith-Waterman score: 712; 99.2% identity (99.2% similar) in 118 aa overlap (1-118:1-117)
10 20 30 40 50 60
pF1KB8 MADGKAGDEKPEKSQRAGAAGGPEEEAEKPVKTKTVSSSNGGESSSRSAEKRSAEEEAAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MADGKAGDEKPEKSQRAGAAGGPEEEAEKPVKTKTVSSSNGGESSSRSAEKRSAEEEAAD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LPTKPTKISKFGFAIGSQTTKKASAISIKLGSSKPKETVPTLAPKTLSVAAAFNEDEDSE
::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
XP_016 LPTKPTKISKFGFAIGSQTTKKASAISIKLGSS-PKETVPTLAPKTLSVAAAFNEDEDGY
70 80 90 100 110
130 140 150 160 170
pF1KB8 PEEMPPEAKMRMKNIGRDTPTSAGPNSFNKGKHGFSDNQKLWERNIKSHLGNVHDQDN
XP_016 TNISWTKLLQ
120
>>NP_001307330 (OMIM: 615210) PEST proteolytic signal-co (153 aa)
initn: 616 init1: 588 opt: 588 Z-score: 544.0 bits: 107.0 E(85289): 1.5e-23
Smith-Waterman score: 937; 86.0% identity (86.0% similar) in 178 aa overlap (1-178:1-153)
10 20 30 40 50 60
pF1KB8 MADGKAGDEKPEKSQRAGAAGGPEEEAEKPVKTKTVSSSNGGESSSRSAEKRSAEEEAAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MADGKAGDEKPEKSQRAGAAGGPEEEAEKPVKTKTVSSSNGGESSSRSAEKRSAEEEAAD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LPTKPTKISKFGFAIGSQTTKKASAISIKLGSSKPKETVPTLAPKTLSVAAAFNEDEDSE
::::::::::::::::::::::::::::::::: ::
NP_001 LPTKPTKISKFGFAIGSQTTKKASAISIKLGSS-------------------------SE
70 80 90
130 140 150 160 170
pF1KB8 PEEMPPEAKMRMKNIGRDTPTSAGPNSFNKGKHGFSDNQKLWERNIKSHLGNVHDQDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PEEMPPEAKMRMKNIGRDTPTSAGPNSFNKGKHGFSDNQKLWERNIKSHLGNVHDQDN
100 110 120 130 140 150
>>NP_001307329 (OMIM: 615210) PEST proteolytic signal-co (105 aa)
initn: 573 init1: 573 opt: 573 Z-score: 533.0 bits: 104.4 E(85289): 6e-23
Smith-Waterman score: 573; 100.0% identity (100.0% similar) in 93 aa overlap (1-93:1-93)
10 20 30 40 50 60
pF1KB8 MADGKAGDEKPEKSQRAGAAGGPEEEAEKPVKTKTVSSSNGGESSSRSAEKRSAEEEAAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MADGKAGDEKPEKSQRAGAAGGPEEEAEKPVKTKTVSSSNGGESSSRSAEKRSAEEEAAD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LPTKPTKISKFGFAIGSQTTKKASAISIKLGSSKPKETVPTLAPKTLSVAAAFNEDEDSE
:::::::::::::::::::::::::::::::::
NP_001 LPTKPTKISKFGFAIGSQTTKKASAISIKLGSSGYTNISWTKLLQ
70 80 90 100
130 140 150 160 170
pF1KB8 PEEMPPEAKMRMKNIGRDTPTSAGPNSFNKGKHGFSDNQKLWERNIKSHLGNVHDQDN
>>NP_001307326 (OMIM: 615210) PEST proteolytic signal-co (145 aa)
initn: 945 init1: 487 opt: 516 Z-score: 480.1 bits: 95.1 E(85289): 5.3e-20
Smith-Waterman score: 883; 81.5% identity (81.5% similar) in 178 aa overlap (1-178:1-145)
10 20 30 40 50 60
pF1KB8 MADGKAGDEKPEKSQRAGAAGGPEEEAEKPVKTKTVSSSNGGESSSRSAEKRSAEEEAAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MADGKAGDEKPEKSQRAGAAGGPEEEAEKPVKTKTVSSSNGGESSSRSAEKRSAEEEAAD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LPTKPTKISKFGFAIGSQTTKKASAISIKLGSSKPKETVPTLAPKTLSVAAAFNEDEDSE
::::::::::::::: ::::::::::::
NP_001 LPTKPTKISKFGFAI---------------------------------VAAAFNEDEDSE
70 80
130 140 150 160 170
pF1KB8 PEEMPPEAKMRMKNIGRDTPTSAGPNSFNKGKHGFSDNQKLWERNIKSHLGNVHDQDN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PEEMPPEAKMRMKNIGRDTPTSAGPNSFNKGKHGFSDNQKLWERNIKSHLGNVHDQDN
90 100 110 120 130 140
178 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 14:30:41 2016 done: Mon Nov 7 14:30:42 2016
Total Scan time: 6.320 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]