FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8030, 562 aa
  1>>>pF1KB8030 562 - 562 aa - 562 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3485+/-0.000873; mu= 9.9998+/- 0.053
 mean_var=124.7720+/-25.117, 0's: 0 Z-trim(109.8): 16  B-trim: 99 in 1/53
 Lambda= 0.114820
 statistics sampled from 11152 (11158) to 11152 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.695), E-opt: 0.2 (0.343), width:  16
 Scan time:  3.540

The best scores are:                                      opt bits E(32554)
CCDS53938.1 WDR76 gene_id:79968|Hs108|chr15        ( 562) 3744 631.5 8.3e-181
CCDS10106.1 WDR76 gene_id:79968|Hs108|chr15        ( 626) 3744 631.5 9.1e-181


>>CCDS53938.1 WDR76 gene_id:79968|Hs108|chr15             (562 aa)
 initn: 3744 init1: 3744 opt: 3744  Z-score: 3359.5  bits: 631.5 E(32554): 8.3e-181
Smith-Waterman score: 3744; 100.0% identity (100.0% similar) in 562 aa overlap (1-562:1-562)

               10        20        30        40        50        60
pF1KB8 MCPKSLSEKNSNNEVACKKTKIKKTCRRIIPPKMKNTSSKAESTLQNSSSAVHTESNKLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MCPKSLSEKNSNNEVACKKTKIKKTCRRIIPPKMKNTSSKAESTLQNSSSAVHTESNKLQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 PKRTADAMNLSVDVESSQDGDSDEDTTPSLDFSGLSPYERKRLKNISENADFFASLQLSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 PKRTADAMNLSVDVESSQDGDSDEDTTPSLDFSGLSPYERKRLKNISENADFFASLQLSE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 SAARLREMIEKRQPPKSKRKKPKRENGIGCRRSMRLLKVDPSGVSLPAAPTPPTLVADET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 SAARLREMIEKRQPPKSKRKKPKRENGIGCRRSMRLLKVDPSGVSLPAAPTPPTLVADET
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 PLLPPGPLEMTSENQEDNNERFKGFLHTWAGMSKPSSKNTEKGLSSIKSYKANLNGMVIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 PLLPPGPLEMTSENQEDNNERFKGFLHTWAGMSKPSSKNTEKGLSSIKSYKANLNGMVIS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 EDTVYKVTTGPIFSMALHPSETRTLVAVGAKFGQVGLCDLTQQPKEDGVYVFHPHSQPVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 EDTVYKVTTGPIFSMALHPSETRTLVAVGAKFGQVGLCDLTQQPKEDGVYVFHPHSQPVS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 CLYFSPANPAHILSLSYDGTLRCGDFSRAIFEEVYRNERSSFSSFDFLAEDASTLIVGHW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 CLYFSPANPAHILSLSYDGTLRCGDFSRAIFEEVYRNERSSFSSFDFLAEDASTLIVGHW
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 DGNMSLVDRRTPGTSYEKLTSSSMGKIRTVHVHPVHRQYFITAGLRDTHIYDARRLNSRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 DGNMSLVDRRTPGTSYEKLTSSSMGKIRTVHVHPVHRQYFITAGLRDTHIYDARRLNSRR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 SQPLISLTEHTKSIASAYFSPLTGNRVVTTCADCNLRIFDSSCISSKIPLLTTIRHNTFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 SQPLISLTEHTKSIASAYFSPLTGNRVVTTCADCNLRIFDSSCISSKIPLLTTIRHNTFT
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB8 GRWLTRFQAMWDPKQEDCVIVGSMAHPRRVEIFHETGKRVHSFGGEYLVSVCSINAMHPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 GRWLTRFQAMWDPKQEDCVIVGSMAHPRRVEIFHETGKRVHSFGGEYLVSVCSINAMHPT
              490       500       510       520       530       540

              550       560  
pF1KB8 RYILAGGNSSGKIHVFMNEKSC
       ::::::::::::::::::::::
CCDS53 RYILAGGNSSGKIHVFMNEKSC
              550       560  

>>CCDS10106.1 WDR76 gene_id:79968|Hs108|chr15             (626 aa)
 initn: 3744 init1: 3744 opt: 3744  Z-score: 3358.8  bits: 631.5 E(32554): 9.1e-181
Smith-Waterman score: 3744; 100.0% identity (100.0% similar) in 562 aa overlap (1-562:65-626)

                                             10        20        30
pF1KB8                               MCPKSLSEKNSNNEVACKKTKIKKTCRRII
                                     ::::::::::::::::::::::::::::::
CCDS10 LRPAQTTVLIKTAKVYLAPFSLSNYQLDQLMCPKSLSEKNSNNEVACKKTKIKKTCRRII
           40        50        60        70        80        90    

               40        50        60        70        80        90
pF1KB8 PPKMKNTSSKAESTLQNSSSAVHTESNKLQPKRTADAMNLSVDVESSQDGDSDEDTTPSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PPKMKNTSSKAESTLQNSSSAVHTESNKLQPKRTADAMNLSVDVESSQDGDSDEDTTPSL
          100       110       120       130       140       150    

              100       110       120       130       140       150
pF1KB8 DFSGLSPYERKRLKNISENADFFASLQLSESAARLREMIEKRQPPKSKRKKPKRENGIGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 DFSGLSPYERKRLKNISENADFFASLQLSESAARLREMIEKRQPPKSKRKKPKRENGIGC
          160       170       180       190       200       210    

              160       170       180       190       200       210
pF1KB8 RRSMRLLKVDPSGVSLPAAPTPPTLVADETPLLPPGPLEMTSENQEDNNERFKGFLHTWA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RRSMRLLKVDPSGVSLPAAPTPPTLVADETPLLPPGPLEMTSENQEDNNERFKGFLHTWA
          220       230       240       250       260       270    

              220       230       240       250       260       270
pF1KB8 GMSKPSSKNTEKGLSSIKSYKANLNGMVISEDTVYKVTTGPIFSMALHPSETRTLVAVGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GMSKPSSKNTEKGLSSIKSYKANLNGMVISEDTVYKVTTGPIFSMALHPSETRTLVAVGA
          280       290       300       310       320       330    

              280       290       300       310       320       330
pF1KB8 KFGQVGLCDLTQQPKEDGVYVFHPHSQPVSCLYFSPANPAHILSLSYDGTLRCGDFSRAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KFGQVGLCDLTQQPKEDGVYVFHPHSQPVSCLYFSPANPAHILSLSYDGTLRCGDFSRAI
          340       350       360       370       380       390    

              340       350       360       370       380       390
pF1KB8 FEEVYRNERSSFSSFDFLAEDASTLIVGHWDGNMSLVDRRTPGTSYEKLTSSSMGKIRTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 FEEVYRNERSSFSSFDFLAEDASTLIVGHWDGNMSLVDRRTPGTSYEKLTSSSMGKIRTV
          400       410       420       430       440       450    

              400       410       420       430       440       450
pF1KB8 HVHPVHRQYFITAGLRDTHIYDARRLNSRRSQPLISLTEHTKSIASAYFSPLTGNRVVTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 HVHPVHRQYFITAGLRDTHIYDARRLNSRRSQPLISLTEHTKSIASAYFSPLTGNRVVTT
          460       470       480       490       500       510    

              460       470       480       490       500       510
pF1KB8 CADCNLRIFDSSCISSKIPLLTTIRHNTFTGRWLTRFQAMWDPKQEDCVIVGSMAHPRRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 CADCNLRIFDSSCISSKIPLLTTIRHNTFTGRWLTRFQAMWDPKQEDCVIVGSMAHPRRV
          520       530       540       550       560       570    

              520       530       540       550       560  
pF1KB8 EIFHETGKRVHSFGGEYLVSVCSINAMHPTRYILAGGNSSGKIHVFMNEKSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EIFHETGKRVHSFGGEYLVSVCSINAMHPTRYILAGGNSSGKIHVFMNEKSC
          580       590       600       610       620      




562 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 09:30:21 2016 done: Sun Nov  6 09:30:21 2016
 Total Scan time:  3.540 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]