Result of FASTA (ccds) for
pFN21AB7963
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7963, 292 aa
1>>>pF1KB7963 292 - 292 aa - 292 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0751+/-0.00104; mu= 15.8669+/- 0.063
mean_var=60.0112+/-11.691, 0's: 0 Z-trim(102.6): 25 B-trim: 2 in 1/48
Lambda= 0.165561
statistics sampled from 7019 (7038) to 7019 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.547), E-opt: 0.2 (0.216), width: 16
Scan time: 2.120
The best scores are: opt bits E(32554)
CCDS32682.1 NME2 gene_id:654364|Hs108|chr17 ( 267) 1807 440.3 7.1e-124
CCDS11580.1 NME2 gene_id:4831|Hs108|chr17 ( 152) 1031 254.9 2.8e-68
CCDS11578.1 NME1 gene_id:4830|Hs108|chr17 ( 177) 939 232.9 1.3e-61
CCDS11579.1 NME1 gene_id:4830|Hs108|chr17 ( 152) 928 230.3 7e-61
CCDS10443.1 NME3 gene_id:4832|Hs108|chr16 ( 169) 711 178.4 3.1e-45
CCDS10408.1 NME4 gene_id:4833|Hs108|chr16 ( 187) 609 154.1 7.2e-38
CCDS74107.1 NME2 gene_id:4831|Hs108|chr17 ( 82) 503 128.6 1.5e-30
CCDS66886.1 NME4 gene_id:4833|Hs108|chr16 ( 117) 448 115.5 1.8e-26
CCDS73797.1 NME4 gene_id:4833|Hs108|chr16 ( 153) 282 76.0 2e-14
CCDS4197.1 NME5 gene_id:8382|Hs108|chr5 ( 212) 247 67.7 8.6e-12
CCDS2763.1 NME6 gene_id:10201|Hs108|chr3 ( 194) 245 67.2 1.1e-11
CCDS77734.1 NME6 gene_id:10201|Hs108|chr3 ( 186) 243 66.7 1.5e-11
>>CCDS32682.1 NME2 gene_id:654364|Hs108|chr17 (267 aa)
initn: 1807 init1: 1807 opt: 1807 Z-score: 2337.5 bits: 440.3 E(32554): 7.1e-124
Smith-Waterman score: 1807; 100.0% identity (100.0% similar) in 267 aa overlap (26-292:1-267)
10 20 30 40 50 60
pF1KB7 MVLLSTLGIVFQGEGPPISSCDTGTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRL
:::::::::::::::::::::::::::::::::::
CCDS32 MANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRL
10 20 30
70 80 90 100 110 120
pF1KB7 VGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETN
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB7 PADSKPGTIRGDFCIQVGRTMANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PADSKPGTIRGDFCIQVGRTMANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKF
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB7 LRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSK
160 170 180 190 200 210
250 260 270 280 290
pF1KB7 PGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWVYE
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWVYE
220 230 240 250 260
>>CCDS11580.1 NME2 gene_id:4831|Hs108|chr17 (152 aa)
initn: 1031 init1: 1031 opt: 1031 Z-score: 1339.4 bits: 254.9 E(32554): 2.8e-68
Smith-Waterman score: 1031; 100.0% identity (100.0% similar) in 152 aa overlap (141-292:1-152)
120 130 140 150 160 170
pF1KB7 TGRVMLGETNPADSKPGTIRGDFCIQVGRTMANLERTFIAIKPDGVQRGLVGEIIKRFEQ
::::::::::::::::::::::::::::::
CCDS11 MANLERTFIAIKPDGVQRGLVGEIIKRFEQ
10 20 30
180 190 200 210 220 230
pF1KB7 KGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVM
40 50 60 70 80 90
240 250 260 270 280 290
pF1KB7 LGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWV
100 110 120 130 140 150
pF1KB7 YE
::
CCDS11 YE
>>CCDS11578.1 NME1 gene_id:4830|Hs108|chr17 (177 aa)
initn: 939 init1: 939 opt: 939 Z-score: 1219.7 bits: 232.9 E(32554): 1.3e-61
Smith-Waterman score: 939; 98.6% identity (100.0% similar) in 141 aa overlap (1-141:1-141)
10 20 30 40 50 60
pF1KB7 MVLLSTLGIVFQGEGPPISSCDTGTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MVLLSTLGIVFQGEGPPISSCDTGTMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 VGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 PADSKPGTIRGDFCIQVGRTMANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKF
:::::::::::::::::::..
CCDS11 PADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE
130 140 150 160 170
>>CCDS11579.1 NME1 gene_id:4830|Hs108|chr17 (152 aa)
initn: 928 init1: 928 opt: 928 Z-score: 1206.5 bits: 230.3 E(32554): 7e-61
Smith-Waterman score: 928; 88.2% identity (97.4% similar) in 152 aa overlap (141-292:1-152)
120 130 140 150 160 170
pF1KB7 TGRVMLGETNPADSKPGTIRGDFCIQVGRTMANLERTFIAIKPDGVQRGLVGEIIKRFEQ
::: ::::::::::::::::::::::::::
CCDS11 MANCERTFIAIKPDGVQRGLVGEIIKRFEQ
10 20 30
180 190 200 210 220 230
pF1KB7 KGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVM
::::::..::..:::. ::.::.:::::::: ::::::.:::::::::::::::::::::
CCDS11 KGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVM
40 50 60 70 80 90
240 250 260 270 280 290
pF1KB7 LGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWV
:::::::::::::::::::::::::::::::::.::::::.:::.::::::: :::..:.
CCDS11 LGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWI
100 110 120 130 140 150
pF1KB7 YE
::
CCDS11 YE
>>CCDS10443.1 NME3 gene_id:4832|Hs108|chr16 (169 aa)
initn: 711 init1: 711 opt: 711 Z-score: 925.7 bits: 178.4 E(32554): 3.1e-45
Smith-Waterman score: 711; 65.5% identity (91.2% similar) in 148 aa overlap (145-292:22-169)
120 130 140 150 160 170
pF1KB7 MLGETNPADSKPGTIRGDFCIQVGRTMANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFR
::::.:.::::::: :::::..:::.:::.
CCDS10 MICLVLTIFANLFPAACTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFK
10 20 30 40 50
180 190 200 210 220 230
pF1KB7 LVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGET
:::.:...:::: :..:: .:..:::. ::::: :::::::::.::.::.:.:...: :
CCDS10 LVALKLVQASEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGAT
60 70 80 90 100 110
240 250 260 270 280 290
pF1KB7 NPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWVYE
::::. ::::::::::.::.:.:::::::.::..::.:::. .::. ... : :.::
CCDS10 NPADAPPGTIRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE
120 130 140 150 160
>>CCDS10408.1 NME4 gene_id:4833|Hs108|chr16 (187 aa)
initn: 1093 init1: 609 opt: 609 Z-score: 793.3 bits: 154.1 E(32554): 7.2e-38
Smith-Waterman score: 609; 59.4% identity (89.9% similar) in 138 aa overlap (145-282:38-175)
120 130 140 150 160 170
pF1KB7 MLGETNPADSKPGTIRGDFCIQVGRTMANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFR
:::..:.::::::: :::..:.:::..::
CCDS10 SALRGLRCGPRAPGPSLLVRHGSGGPSWTRERTLVAVKPDGVQRRLVGDVIQRFERRGFT
10 20 30 40 50 60
180 190 200 210 220 230
pF1KB7 LVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGET
::.::.:.: : : .:: ::. .::.:.:..::.::::::::::: :::...:.:.:.:
CCDS10 LVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYNVVRASRAMIGHT
70 80 90 100 110 120
240 250 260 270 280 290
pF1KB7 NPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWVYE
. :.. :::::::: ....::.::.::::..:..::.:::. :::..
CCDS10 DSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSELVSWADGGQHSSIHPA
130 140 150 160 170 180
>>CCDS74107.1 NME2 gene_id:4831|Hs108|chr17 (82 aa)
initn: 503 init1: 503 opt: 503 Z-score: 661.9 bits: 128.6 E(32554): 1.5e-30
Smith-Waterman score: 503; 100.0% identity (100.0% similar) in 76 aa overlap (141-216:1-76)
120 130 140 150 160 170
pF1KB7 TGRVMLGETNPADSKPGTIRGDFCIQVGRTMANLERTFIAIKPDGVQRGLVGEIIKRFEQ
::::::::::::::::::::::::::::::
CCDS74 MANLERTFIAIKPDGVQRGLVGEIIKRFEQ
10 20 30
180 190 200 210 220 230
pF1KB7 KGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVM
::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 KGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMEHHSWQ
40 50 60 70 80
240 250 260 270 280 290
pF1KB7 LGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWV
>>CCDS66886.1 NME4 gene_id:4833|Hs108|chr16 (117 aa)
initn: 751 init1: 448 opt: 448 Z-score: 588.6 bits: 115.5 E(32554): 1.8e-26
Smith-Waterman score: 448; 57.1% identity (88.6% similar) in 105 aa overlap (178-282:1-105)
150 160 170 180 190 200
pF1KB7 FIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKY
::.:.: : : .:: ::. .::.:.:..:
CCDS66 MKMLQAPESVLAEHYQDLRRKPFYPALIRY
10 20 30
210 220 230 240 250 260
pF1KB7 MNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAE
:.::::::::::: :::...:.:.:.:. :.. :::::::: ....::.::.::::..:.
CCDS66 MSSGPVVAMVWEGYNVVRASRAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQ
40 50 60 70 80 90
270 280 290
pF1KB7 KEISLWFKPEELVDYKSCAHDWVYE
.::.:::. :::..
CCDS66 REIQLWFQSSELVSWADGGQHSSIHPA
100 110
>>CCDS73797.1 NME4 gene_id:4833|Hs108|chr16 (153 aa)
initn: 608 init1: 281 opt: 282 Z-score: 372.5 bits: 76.0 E(32554): 2e-14
Smith-Waterman score: 383; 44.9% identity (69.6% similar) in 138 aa overlap (145-282:38-141)
120 130 140 150 160 170
pF1KB7 MLGETNPADSKPGTIRGDFCIQVGRTMANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFR
:::..:.::::::: :::..:.:::..::
CCDS73 SALRGLRCGPRAPGPSLLVRHGSGGPSWTRERTLVAVKPDGVQRRLVGDVIQRFERRGFT
10 20 30 40 50 60
180 190 200 210 220 230
pF1KB7 LVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGET
::.::.:. :::: :::...:.:.:.:
CCDS73 LVGMKMLQ----------------------------------VWEGYNVVRASRAMIGHT
70 80 90
240 250 260 270 280 290
pF1KB7 NPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWVYE
. :.. :::::::: ....::.::.::::..:..::.:::. :::..
CCDS73 DSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSELVSWADGGQHSSIHPA
100 110 120 130 140 150
>>CCDS4197.1 NME5 gene_id:8382|Hs108|chr5 (212 aa)
initn: 212 init1: 136 opt: 247 Z-score: 325.2 bits: 67.7 E(32554): 8.6e-12
Smith-Waterman score: 247; 33.8% identity (64.1% similar) in 142 aa overlap (144-281:12-149)
120 130 140 150 160 170
pF1KB7 VMLGETNPADSKPGTIRGDFCIQVGRTMANLERTFIAIKPDGVQRGL-VGEIIKRFEQKG
.:.:. :::: :.. . .:: : .:
CCDS41 MEISMPPPQIYVEKTLAIIKPDIVDKEEEIQDIILR---SG
10 20 30
180 190 200 210 220 230
pF1KB7 FRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLG
: .: . :: : :. .. :.. . :::.:. ::.:::.:::. .... .::
CCDS41 FTIVQRRKLRLSPEQCSNFYVEKYGKMFFPNLTAYMSSGPLVAMILARHKAISYWLELLG
40 50 60 70 80 90
240 250 260 270 280
pF1KB7 ETNP---ADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDW
.: ...: ..:. . . :: .:::.. .::.:: . : :: .:.
CCDS41 PNNSLVAKETHPDSLRAIYGTDDLRNALHGSNDFAAAEREIRFMF-PEVIVEPIPIGQAA
100 110 120 130 140 150
290
pF1KB7 VYE
CCDS41 KDYLNLHIMPTLLEGLTELCKQKPADPLIWLADWLLKNNPNKPKLCHHPIVEEPY
160 170 180 190 200 210
292 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 05:47:30 2016 done: Sun Nov 6 05:47:31 2016
Total Scan time: 2.120 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]