FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7941, 343 aa
  1>>>pF1KB7941 343 - 343 aa - 343 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.0008+/-0.00075; mu= 2.0674+/- 0.046
 mean_var=224.6836+/-45.481, 0's: 0 Z-trim(117.6): 152  B-trim: 13 in 1/51
 Lambda= 0.085564
 statistics sampled from 18227 (18400) to 18227 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.833), E-opt: 0.2 (0.565), width:  16
 Scan time:  3.550

The best scores are:                                      opt bits E(32554)
CCDS31781.1 DBX2 gene_id:440097|Hs108|chr12        ( 339)  494 72.7 4.8e-13


>>CCDS31781.1 DBX2 gene_id:440097|Hs108|chr12             (339 aa)
 initn: 454 init1: 391 opt: 494  Z-score: 347.7  bits: 72.7 E(32554): 4.8e-13
Smith-Waterman score: 529; 38.4% identity (59.1% similar) in 323 aa overlap (2-297:1-310)

               10         20        30        40        50         
pF1KB7 MMFPGLLAPPAG-YPSLLRPTPTLTLPQSLQSAFSGHSSFLVEDLIRISRPPAYLPRSVP
        :.:. .:  :: : ...  .  :.:: .   .  :.: ::.:.:.:..  :.  ::  :
CCDS31  MLPSAVAAHAGAYWDVVASSALLNLPAAPGFGNLGKS-FLIENLLRVGGAPT--PRLQP
                10        20        30         40        50        

      60                    70        80        90        100      
pF1KB7 TASMSP------------PRQGAPTALTDTGASDLGSPGPGSRRGGSPP-TAFSPASETT
        :  .:            :  ..:. :    :..  ::. :.  :      ..::.....
CCDS31 PAPHDPATALATAGAQLRPLPASPVPLKLCPAAEQVSPA-GAPYGTRWAFQVLSPSADSA
         60        70        80        90        100       110     

        110       120           130       140       150       160  
pF1KB7 FLKFGVNAILSSGPRTETSPA----LLQSVPPKTFAFPYFEGSFQPFIRSSYFPASSSVV
        :  :      .     ..::    .: :.::  :      :: .    :. ::   :..
CCDS31 RLP-GRAPGDRDCTFQPSAPAPSKPFLLSTPP--FYSACCGGSCRRPASSTAFPREESML
          120       130       140         150       160       170  

            170       180       190       200       210       220  
pF1KB7 PIPGTFSWPLAARGKPRRGMLRRAVFSDVQRKALEKMFQKQKYISKPDRKKLAAKLGLKD
       :.         . .: :::.:::::::. ::::::::::::::::: :::::: .::::.
CCDS31 PL-----LTQDSNSKARRGILRRAVFSEDQRKALEKMFQKQKYISKTDRKKLAINLGLKE
                 180       190       200       210       220       

            230       240            250           260       270   
pF1KB7 SQVKIWFQNRRMKWRNSKERELLSSG-----GCREQTLPTKL----NPHPDLSDVGQKGP
       :::::::::::::::::::.:.::.      : .:. :  .     .: :.. :: :.  
CCDS31 SQVKIWFQNRRMKWRNSKEKEVLSNRCIQEVGLQEDPLSRSALGFPSPCPSIWDVPQQHS
       230       240       250       260       270       280       

           280       290       300       310       320       330   
pF1KB7 GNEEEEEGPGSPSHRLAYHASSDPQHLRDPRLPGPLPPSPAHSSSPGKPSDFSDSEEEEE
       . . .:..:  ::.::  ..:. :                                    
CCDS31 SPRWRENSP-EPSERLIQESSGAPPPEANSLQGALYLCSEEEAGSKGVLTGAV       
       290        300       310       320       330                




343 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 04:39:07 2016 done: Sun Nov  6 04:39:07 2016
 Total Scan time:  3.550 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]