Result of FASTA (omim) for
pFN21AB7931
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7931, 365 aa
1>>>pF1KB7931 365 - 365 aa - 365 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.7071+/-0.000326; mu= 4.4496+/- 0.021
mean_var=279.5893+/-56.735, 0's: 0 Z-trim(124.3): 188 B-trim: 40 in 1/57
Lambda= 0.076703
statistics sampled from 45603 (45843) to 45603 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.829), E-opt: 0.2 (0.538), width: 16
Scan time: 7.860
The best scores are: opt bits E(85289)
NP_055403 (OMIM: 122000,148300,605020,614195) visu ( 365) 2504 289.7 7.2e-78
XP_016883326 (OMIM: 122000,148300,605020,614195) P ( 280) 1866 218.9 1.1e-56
NP_001243201 (OMIM: 122000,148300,605020,614195) v ( 301) 1866 219.0 1.1e-56
NP_955457 (OMIM: 122000,148300,605020,614195) visu ( 239) 1434 171.1 2.4e-42
XP_016883327 (OMIM: 122000,148300,605020,614195) P ( 218) 1429 170.5 3.3e-42
NP_001243200 (OMIM: 122000,148300,605020,614195) v ( 236) 1429 170.5 3.5e-42
NP_878314 (OMIM: 142993,610092,610093) visual syst ( 361) 764 97.1 6.6e-20
NP_068745 (OMIM: 605420,609597,613451,615529) home ( 411) 366 53.1 1.3e-06
NP_038463 (OMIM: 601881,611038) retinal homeobox p ( 346) 351 51.4 3.6e-06
XP_011537084 (OMIM: 601527,613456) PREDICTED: ALX ( 231) 345 50.5 4.4e-06
NP_115485 (OMIM: 604529) homeobox protein orthoped ( 325) 346 50.8 5.1e-06
NP_008913 (OMIM: 601527,613456) ALX homeobox prote ( 326) 345 50.7 5.6e-06
NP_001306003 (OMIM: 605726,610362,610381,613757) r ( 230) 341 50.1 6e-06
NP_001128726 (OMIM: 167410,268220) paired box prot ( 505) 344 50.8 8e-06
NP_039236 (OMIM: 167410,268220) paired box protein ( 518) 344 50.8 8.2e-06
NP_002575 (OMIM: 167410,268220) paired box protein ( 520) 344 50.8 8.2e-06
NP_001297089 (OMIM: 106210,120430,136520,148190,16 ( 286) 337 49.8 9.4e-06
NP_001297090 (OMIM: 106210,120430,136520,148190,16 ( 286) 337 49.8 9.4e-06
NP_001297088 (OMIM: 106210,120430,136520,148190,16 ( 401) 337 49.9 1.2e-05
NP_000271 (OMIM: 106210,120430,136520,148190,16555 ( 422) 337 49.9 1.2e-05
NP_001245393 (OMIM: 106210,120430,136520,148190,16 ( 422) 337 49.9 1.2e-05
NP_001245394 (OMIM: 106210,120430,136520,148190,16 ( 422) 337 49.9 1.2e-05
NP_001121084 (OMIM: 106210,120430,136520,148190,16 ( 422) 337 49.9 1.2e-05
NP_001595 (OMIM: 106210,120430,136520,148190,16555 ( 436) 337 50.0 1.2e-05
NP_001245392 (OMIM: 106210,120430,136520,148190,16 ( 436) 337 50.0 1.2e-05
NP_001245391 (OMIM: 106210,120430,136520,148190,16 ( 436) 337 50.0 1.2e-05
NP_001297087 (OMIM: 106210,120430,136520,148190,16 ( 436) 337 50.0 1.2e-05
NP_852126 (OMIM: 122880,148820,193500,268220,60659 ( 403) 334 49.6 1.5e-05
NP_852125 (OMIM: 122880,148820,193500,268220,60659 ( 407) 334 49.6 1.5e-05
NP_852122 (OMIM: 122880,148820,193500,268220,60659 ( 479) 334 49.7 1.7e-05
NP_001120838 (OMIM: 122880,148820,193500,268220,60 ( 483) 334 49.7 1.7e-05
NP_852123 (OMIM: 122880,148820,193500,268220,60659 ( 484) 334 49.7 1.7e-05
NP_006483 (OMIM: 136760,606014) homeobox protein a ( 343) 331 49.2 1.7e-05
NP_852124 (OMIM: 122880,148820,193500,268220,60659 ( 505) 334 49.7 1.7e-05
NP_620689 (OMIM: 300004,300215,300382,300419,30835 ( 562) 334 49.7 1.9e-05
NP_116142 (OMIM: 605726,610362,610381,613757) reti ( 184) 324 48.1 1.9e-05
NP_005160 (OMIM: 602078,602753) paired mesoderm ho ( 284) 310 46.8 7.4e-05
NP_003915 (OMIM: 209880,603851,613013) paired meso ( 314) 310 46.8 7.9e-05
XP_016855778 (OMIM: 607410) PREDICTED: diencephalo ( 377) 307 46.6 0.00011
NP_757379 (OMIM: 607410) diencephalon/mesencephalo ( 377) 307 46.6 0.00011
XP_011538970 (OMIM: 607410) PREDICTED: diencephalo ( 377) 307 46.6 0.00011
NP_671725 (OMIM: 607410) diencephalon/mesencephalo ( 382) 307 46.6 0.00011
NP_703149 (OMIM: 300154) homeobox protein ESX1 [Ho ( 406) 306 46.5 0.00013
NP_001263380 (OMIM: 606701) dorsal root ganglia ho ( 263) 302 45.8 0.00013
NP_001290437 (OMIM: 612019) intestine-specific hom ( 245) 301 45.7 0.00013
NP_008833 (OMIM: 167420,202650) paired mesoderm ho ( 217) 294 44.9 0.00021
NP_776248 (OMIM: 138890,602471) homeobox protein g ( 257) 295 45.1 0.00022
NP_073207 (OMIM: 167420,202650) paired mesoderm ho ( 245) 294 44.9 0.00023
NP_001191326 (OMIM: 137600,180500,180550,601542,60 ( 317) 294 45.0 0.00027
NP_700475 (OMIM: 137600,180500,180550,601542,60422 ( 317) 294 45.0 0.00027
>>NP_055403 (OMIM: 122000,148300,605020,614195) visual s (365 aa)
initn: 2504 init1: 2504 opt: 2504 Z-score: 1519.0 bits: 289.7 E(85289): 7.2e-78
Smith-Waterman score: 2504; 100.0% identity (100.0% similar) in 365 aa overlap (1-365:1-365)
10 20 30 40 50 60
pF1KB7 MTGRDSLSDGRTSSRALVPGGSPRGSRPRGFAITDLLGLEAELPAPAGPGQGSGCEGPAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MTGRDSLSDGRTSSRALVPGGSPRGSRPRGFAITDLLGLEAELPAPAGPGQGSGCEGPAV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 APCPGPGLDGSSLARGALPLGLGLLCGFGTQPPAAARAPCLLLADVPFLPPRGPEPAAPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 APCPGPGLDGSSLARGALPLGLGLLCGFGTQPPAAARAPCLLLADVPFLPPRGPEPAAPL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 APSRPPPALGRQKRSDSVSTSDEDSQSEDRNDLKASPTLGKRKKRRHRTVFTAHQLEELE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 APSRPPPALGRQKRSDSVSTSDEDSQSEDRNDLKASPTLGKRKKRRHRTVFTAHQLEELE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 KAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGSSVMAEYGLYGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 KAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGSSVMAEYGLYGA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 MVRHCIPLPDSVLNSAEGGLLGSCAPWLLGMHKKSMGMIRKPGSEDKLAGLWGSDHFKEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MVRHCIPLPDSVLNSAEGGLLGSCAPWLLGMHKKSMGMIRKPGSEDKLAGLWGSDHFKEG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 SSQSESGSQRGSDKVSPENGLEDVAIDLSSSARQETKKVHPGAGAQGGSNSTALEGPQPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 SSQSESGSQRGSDKVSPENGLEDVAIDLSSSARQETKKVHPGAGAQGGSNSTALEGPQPG
310 320 330 340 350 360
pF1KB7 KVGAT
:::::
NP_055 KVGAT
>>XP_016883326 (OMIM: 122000,148300,605020,614195) PREDI (280 aa)
initn: 1866 init1: 1866 opt: 1866 Z-score: 1138.8 bits: 218.9 E(85289): 1.1e-56
Smith-Waterman score: 1866; 100.0% identity (100.0% similar) in 269 aa overlap (1-269:1-269)
10 20 30 40 50 60
pF1KB7 MTGRDSLSDGRTSSRALVPGGSPRGSRPRGFAITDLLGLEAELPAPAGPGQGSGCEGPAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MTGRDSLSDGRTSSRALVPGGSPRGSRPRGFAITDLLGLEAELPAPAGPGQGSGCEGPAV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 APCPGPGLDGSSLARGALPLGLGLLCGFGTQPPAAARAPCLLLADVPFLPPRGPEPAAPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 APCPGPGLDGSSLARGALPLGLGLLCGFGTQPPAAARAPCLLLADVPFLPPRGPEPAAPL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 APSRPPPALGRQKRSDSVSTSDEDSQSEDRNDLKASPTLGKRKKRRHRTVFTAHQLEELE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 APSRPPPALGRQKRSDSVSTSDEDSQSEDRNDLKASPTLGKRKKRRHRTVFTAHQLEELE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 KAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGSSVMAEYGLYGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGSSVMAEYGLYGA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 MVRHCIPLPDSVLNSAEGGLLGSCAPWLLGMHKKSMGMIRKPGSEDKLAGLWGSDHFKEG
:::::::::::::::::::::::::::::
XP_016 MVRHCIPLPDSVLNSAEGGLLGSCAPWLLEGETLGCREMK
250 260 270 280
>>NP_001243201 (OMIM: 122000,148300,605020,614195) visua (301 aa)
initn: 1866 init1: 1866 opt: 1866 Z-score: 1138.4 bits: 219.0 E(85289): 1.1e-56
Smith-Waterman score: 1866; 100.0% identity (100.0% similar) in 269 aa overlap (1-269:1-269)
10 20 30 40 50 60
pF1KB7 MTGRDSLSDGRTSSRALVPGGSPRGSRPRGFAITDLLGLEAELPAPAGPGQGSGCEGPAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTGRDSLSDGRTSSRALVPGGSPRGSRPRGFAITDLLGLEAELPAPAGPGQGSGCEGPAV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 APCPGPGLDGSSLARGALPLGLGLLCGFGTQPPAAARAPCLLLADVPFLPPRGPEPAAPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 APCPGPGLDGSSLARGALPLGLGLLCGFGTQPPAAARAPCLLLADVPFLPPRGPEPAAPL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 APSRPPPALGRQKRSDSVSTSDEDSQSEDRNDLKASPTLGKRKKRRHRTVFTAHQLEELE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 APSRPPPALGRQKRSDSVSTSDEDSQSEDRNDLKASPTLGKRKKRRHRTVFTAHQLEELE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 KAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGSSVMAEYGLYGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGSSVMAEYGLYGA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 MVRHCIPLPDSVLNSAEGGLLGSCAPWLLGMHKKSMGMIRKPGSEDKLAGLWGSDHFKEG
:::::::::::::::::::::::::::::
NP_001 MVRHCIPLPDSVLNSAEGGLLGSCAPWLLVQTSAPGGSRSLDFAGDTQAPQTPWWCLMTF
250 260 270 280 290 300
>>NP_955457 (OMIM: 122000,148300,605020,614195) visual s (239 aa)
initn: 1434 init1: 1434 opt: 1434 Z-score: 881.3 bits: 171.1 E(85289): 2.4e-42
Smith-Waterman score: 1434; 100.0% identity (100.0% similar) in 210 aa overlap (1-210:1-210)
10 20 30 40 50 60
pF1KB7 MTGRDSLSDGRTSSRALVPGGSPRGSRPRGFAITDLLGLEAELPAPAGPGQGSGCEGPAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_955 MTGRDSLSDGRTSSRALVPGGSPRGSRPRGFAITDLLGLEAELPAPAGPGQGSGCEGPAV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 APCPGPGLDGSSLARGALPLGLGLLCGFGTQPPAAARAPCLLLADVPFLPPRGPEPAAPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_955 APCPGPGLDGSSLARGALPLGLGLLCGFGTQPPAAARAPCLLLADVPFLPPRGPEPAAPL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 APSRPPPALGRQKRSDSVSTSDEDSQSEDRNDLKASPTLGKRKKRRHRTVFTAHQLEELE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_955 APSRPPPALGRQKRSDSVSTSDEDSQSEDRNDLKASPTLGKRKKRRHRTVFTAHQLEELE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 KAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGSSVMAEYGLYGA
::::::::::::::::::::::::::::::
NP_955 KAFSEAHYPDVYAREMLAVKTELPEDRIQVSGVPFLRSKDTTENVSFPHSVSQSAVPSL
190 200 210 220 230
>>XP_016883327 (OMIM: 122000,148300,605020,614195) PREDI (218 aa)
initn: 1429 init1: 1429 opt: 1429 Z-score: 878.8 bits: 170.5 E(85289): 3.3e-42
Smith-Waterman score: 1429; 100.0% identity (100.0% similar) in 209 aa overlap (1-209:1-209)
10 20 30 40 50 60
pF1KB7 MTGRDSLSDGRTSSRALVPGGSPRGSRPRGFAITDLLGLEAELPAPAGPGQGSGCEGPAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MTGRDSLSDGRTSSRALVPGGSPRGSRPRGFAITDLLGLEAELPAPAGPGQGSGCEGPAV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 APCPGPGLDGSSLARGALPLGLGLLCGFGTQPPAAARAPCLLLADVPFLPPRGPEPAAPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 APCPGPGLDGSSLARGALPLGLGLLCGFGTQPPAAARAPCLLLADVPFLPPRGPEPAAPL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 APSRPPPALGRQKRSDSVSTSDEDSQSEDRNDLKASPTLGKRKKRRHRTVFTAHQLEELE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 APSRPPPALGRQKRSDSVSTSDEDSQSEDRNDLKASPTLGKRKKRRHRTVFTAHQLEELE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 KAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGSSVMAEYGLYGA
:::::::::::::::::::::::::::::
XP_016 KAFSEAHYPDVYAREMLAVKTELPEDRIQRVRHWAAEK
190 200 210
>>NP_001243200 (OMIM: 122000,148300,605020,614195) visua (236 aa)
initn: 1429 init1: 1429 opt: 1429 Z-score: 878.3 bits: 170.5 E(85289): 3.5e-42
Smith-Waterman score: 1429; 100.0% identity (100.0% similar) in 209 aa overlap (1-209:1-209)
10 20 30 40 50 60
pF1KB7 MTGRDSLSDGRTSSRALVPGGSPRGSRPRGFAITDLLGLEAELPAPAGPGQGSGCEGPAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTGRDSLSDGRTSSRALVPGGSPRGSRPRGFAITDLLGLEAELPAPAGPGQGSGCEGPAV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 APCPGPGLDGSSLARGALPLGLGLLCGFGTQPPAAARAPCLLLADVPFLPPRGPEPAAPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 APCPGPGLDGSSLARGALPLGLGLLCGFGTQPPAAARAPCLLLADVPFLPPRGPEPAAPL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 APSRPPPALGRQKRSDSVSTSDEDSQSEDRNDLKASPTLGKRKKRRHRTVFTAHQLEELE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 APSRPPPALGRQKRSDSVSTSDEDSQSEDRNDLKASPTLGKRKKRRHRTVFTAHQLEELE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 KAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGSSVMAEYGLYGA
:::::::::::::::::::::::::::::
NP_001 KAFSEAHYPDVYAREMLAVKTELPEDRIQCKLLLLEAPVHWTLQETHRLPRPRGGA
190 200 210 220 230
>>NP_878314 (OMIM: 142993,610092,610093) visual system h (361 aa)
initn: 776 init1: 701 opt: 764 Z-score: 478.4 bits: 97.1 E(85289): 6.6e-20
Smith-Waterman score: 816; 45.8% identity (65.6% similar) in 369 aa overlap (1-359:1-337)
10 20 30 40 50
pF1KB7 MTGR--DSLSDGRTSSRAL-VPGGSPRGSRPRGFAITDLLGLEAELPAPAGPGQGSGCEG
:::. ..:: .. . : . ::.: .: ::.: ..:::. : : . : .. .:
NP_878 MTGKAGEALSKPKSETVAKSTSGGAP--ARCTGFGIQEILGLNKE-PPSSHPR--AALDG
10 20 30 40 50
60 70 80 90 100 110
pF1KB7 PAVAPCPGPGLDGSSLARGALPLGLGLLCGFGTQPPAAARAPCL-LLADVPFLPPRGPEP
: :: : . :. : :.::: : : : .. : .:.: :.. .
NP_878 LA----PGHLLAARSVLSPAGVGGMGLL-GPGGLPGFYTQPTFLEVLSD-----PQSVH-
60 70 80 90 100
120 130 140 150 160 170
pF1KB7 AAPLAPSRPPPALGRQKRSDSVSTSDEDSQSEDRNDLKAS-PTLGKRKKRRHRTVFTAHQ
::. . : :...:...:: .: ::. :.. :::::::::.::..:
NP_878 LQPLGRASGP-----LDTSQTASSDSEDVSSSDRKMSKSALNQTKKRKKRRHRTIFTSYQ
110 120 130 140 150
180 190 200 210 220 230
pF1KB7 LEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGSSVMAEY
::::::::.::::::::::::::.::::::::::::::::::::::::: :: :::::::
NP_878 LEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRSSVMAEY
160 170 180 190 200 210
240 250 260 270 280 290
pF1KB7 GLYGAMVRHCIPLPDSVLNSAEGGLLGSCAPWLLGMHKKSMGMI----RKP-GSEDKLAG
::::::::: ::::.:.:.::. :.. :::::::::::::. ::: : .. :
NP_878 GLYGAMVRHSIPLPESILKSAKDGIMDSCAPWLLGMHKKSLEAAAESGRKPEGERQALPK
220 230 240 250 260 270
300 310 320 330 340 350
pF1KB7 LWGSDHFKEGSSQSESGSQRGSDKVSPENGLEDVAIDLSSSARQETKKVHPGAGAQGGSN
: :... :.: : . .. .: :. :. : ..:.... :: :. .: .
NP_878 L---DKME----QDERGPD-AQAAISQEELRENSIAVLRAKAQEHSTKV---LGTVSGPD
280 290 300 310 320
360
pF1KB7 STALEGPQPGKVGAT
: : .:
NP_878 SLARSTEKPEEEEAMDEDRPAERLSPPQLEDMA
330 340 350 360
>>NP_068745 (OMIM: 605420,609597,613451,615529) homeobox (411 aa)
initn: 402 init1: 339 opt: 366 Z-score: 239.7 bits: 53.1 E(85289): 1.3e-06
Smith-Waterman score: 366; 42.8% identity (58.2% similar) in 194 aa overlap (44-227:97-276)
20 30 40 50 60 70
pF1KB7 SRALVPGGSPRGSRPRGFAITDLLGLEAELPAPAGPGQGSGCEG-PAVAPCPGPGLDGSS
: : : : . . : : : :
NP_068 GAGQQDLATPLESGAGARGSFNKFQPQPSTPQPQPPPQPQPQQQQPQPQPPAQPHL---Y
70 80 90 100 110 120
80 90 100 110 120
pF1KB7 LARGAL---PLG-LGLLCGFGTQPPAAARAPCLLLADV---PFLPPRGPEPA--APLAPS
: ::: : : : : : .. :: ..:: . : ::: . . .
NP_068 LQRGACKTPPDGSLKLQEG-SSGHSAALQVPCYAKESSLGEPELPPDSDTVGMDSSYLSV
130 140 150 160 170 180
130 140 150 160 170 180
pF1KB7 RPPPALGRQKRSDSVSTSDEDSQSEDRNDLKASPTLGKRKKRRHRTVFTAHQLEELEKAF
. . : : :. .:: : : ::. .: ::::.::.::..:::::::.:
NP_068 KEAGVKGPQDRA----SSDLPSPLE-----KADSESNKGKKRRNRTTFTSYQLEELEKVF
190 200 210 220 230
190 200 210 220 230 240
pF1KB7 SEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGSSVMAEYGLYGAMVR
...:::::::::.::..:.: : :.::::::::::::::: :.:
NP_068 QKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRE-RFGQMQQVRTHFSTAYELP
240 250 260 270 280 290
250 260 270 280 290 300
pF1KB7 HCIPLPDSVLNSAEGGLLGSCAPWLLGMHKKSMGMIRKPGSEDKLAGLWGSDHFKEGSSQ
NP_068 LLTRAENYAQIQNPSWLGNNGAASPVPACVVPCDPVPACMSPHAHPPGSGASSVTDFLSV
300 310 320 330 340 350
>>NP_038463 (OMIM: 601881,611038) retinal homeobox prote (346 aa)
initn: 354 init1: 316 opt: 351 Z-score: 231.7 bits: 51.4 E(85289): 3.6e-06
Smith-Waterman score: 351; 45.5% identity (69.4% similar) in 134 aa overlap (93-224:71-196)
70 80 90 100 110 120
pF1KB7 CPGPGLDGSSLARGALPLGLGLLCGFGTQPPAAARAPCLLLADVPFLPPRGPEPAAPLAP
:: .:: .. : :: .: ::
NP_038 FTKDDGILGTFPAERGARGAKERDRRLGARPACPKAPE--EGSEPS-PPPAPAPAPEYEA
50 60 70 80 90
130 140 150 160 170 180
pF1KB7 SRP--PPALGRQKRSDSVSTSDEDSQSEDRNDLKASPTLGKRKKRRHRTVFTAHQLEELE
:: : :. . : .. .. . .: . . . .: :.:.::.::.::..::.:::
NP_038 PRPYCPKEPGEARPSPGLPVGP--ATGEAKLSEEEQP---KKKHRRNRTTFTTYQLHELE
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB7 KAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGSSVMAEYGLYGA
.:: ..::::::.:: :: :..::: :.::::::::::::..::
NP_038 RAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEKLEVSSMKLQDSPLLSF
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB7 MVRHCIPLPDSVLNSAEGGLLGSCAPWLLGMHKKSMGMIRKPGSEDKLAGLWGSDHFKEG
NP_038 SRSPPSATLSPLGAGPGSGGGPAGGALPLESWLGPPLPGGGATALQSLPGFGPPAQSLPA
220 230 240 250 260 270
>>XP_011537084 (OMIM: 601527,613456) PREDICTED: ALX home (231 aa)
initn: 333 init1: 333 opt: 345 Z-score: 230.2 bits: 50.5 E(85289): 4.4e-06
Smith-Waterman score: 345; 57.4% identity (84.0% similar) in 94 aa overlap (134-227:8-99)
110 120 130 140 150 160
pF1KB7 ADVPFLPPRGPEPAAPLAPSRPPPALGRQKRSDSVSTSDEDSQSEDRNDLKASPTLGKRK
: . :. .: .. .. .: : . .... :
XP_011 MDNCNSLRMSPVKGMQEKGELDELGD-KCDSNVSSSK
10 20 30
170 180 190 200 210 220
pF1KB7 KRRHRTVFTAHQLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKRE
::::::.::. :::::::.:...::::::.::.::..::: : :.:::::::::::::::
XP_011 KRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRE
40 50 60 70 80 90
230 240 250 260 270 280
pF1KB7 KRWGGSSVMAEYGLYGAMVRHCIPLPDSVLNSAEGGLLGSCAPWLLGMHKKSMGMIRKPG
:.:
XP_011 -RYGQIQQAKSHFAATYDISVLPRTDSYPQIQNNLWAGNASGGSVVTSCMLPRDTSSCMT
100 110 120 130 140 150
365 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 01:38:54 2016 done: Tue Nov 8 01:38:55 2016
Total Scan time: 7.860 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]