FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7903, 107 aa
  1>>>pF1KB7903 107 - 107 aa - 107 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.4966+/-0.000619; mu= 3.2101+/- 0.038
 mean_var=174.5326+/-34.515, 0's: 0 Z-trim(118.6): 8  B-trim: 10 in 1/55
 Lambda= 0.097081
 statistics sampled from 19600 (19607) to 19600 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.87), E-opt: 0.2 (0.602), width:  16
 Scan time:  1.640

The best scores are:                                      opt bits E(32554)
CCDS4789.1 HMGA1 gene_id:3159|Hs108|chr6           ( 107)  704 108.3 9.4e-25
CCDS4788.1 HMGA1 gene_id:3159|Hs108|chr6           (  96)  417 68.1 1.1e-12


>>CCDS4789.1 HMGA1 gene_id:3159|Hs108|chr6                (107 aa)
 initn: 704 init1: 704 opt: 704  Z-score: 557.9  bits: 108.3 E(32554): 9.4e-25
Smith-Waterman score: 704; 100.0% identity (100.0% similar) in 107 aa overlap (1-107:1-107)

               10        20        30        40        50        60
pF1KB7 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR
               10        20        30        40        50        60

               70        80        90       100       
pF1KB7 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ
               70        80        90       100       

>>CCDS4788.1 HMGA1 gene_id:3159|Hs108|chr6                (96 aa)
 initn: 410 init1: 410 opt: 417  Z-score: 341.3  bits: 68.1 E(32554): 1.1e-12
Smith-Waterman score: 604; 89.7% identity (89.7% similar) in 107 aa overlap (1-107:1-96)

               10        20        30        40        50        60
pF1KB7 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR
       ::::::::::::::::::::::::::::::::::           :::::::::::::::
CCDS47 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPP-----------KEPSEVPTPKRPRGR
               10        20        30                   40         

               70        80        90       100       
pF1KB7 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ
      50        60        70        80        90      




107 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 02:06:30 2016 done: Mon Nov  7 02:06:31 2016
 Total Scan time:  1.640 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]