Result of FASTA (ccds) for
pFN21AB7806
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7806, 593 aa
1>>>pF1KB7806 593 - 593 aa - 593 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.0934+/-0.00088; mu= 6.5039+/- 0.054
mean_var=323.8910+/-65.712, 0's: 0 Z-trim(117.9): 24 B-trim: 194 in 1/52
Lambda= 0.071265
statistics sampled from 18680 (18703) to 18680 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.82), E-opt: 0.2 (0.575), width: 16
Scan time: 4.740
The best scores are: opt bits E(32554)
CCDS12050.1 ARID3A gene_id:1820|Hs108|chr19 ( 593) 3939 418.4 1.3e-116
CCDS76777.1 ARID3B gene_id:10620|Hs108|chr15 ( 561) 1179 134.6 3.3e-31
CCDS10264.1 ARID3B gene_id:10620|Hs108|chr15 ( 560) 1170 133.7 6.2e-31
CCDS35006.1 ARID3C gene_id:138715|Hs108|chr9 ( 412) 841 99.7 7.7e-21
>>CCDS12050.1 ARID3A gene_id:1820|Hs108|chr19 (593 aa)
initn: 3939 init1: 3939 opt: 3939 Z-score: 2207.1 bits: 418.4 E(32554): 1.3e-116
Smith-Waterman score: 3939; 99.8% identity (100.0% similar) in 593 aa overlap (1-593:1-593)
10 20 30 40 50 60
pF1KB7 MKLQAVMETLLQRQQRARQELEARQQLPPDPPAAPPGRARAAPDEDREPESARMQRAQMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MKLQAVMETLLQRQQRARQELEARQQLPPDPPAAPPGRARAAPDEDREPESARMQRAQMA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 ALAAMRAAAAGLGHPASPGGSEDGPPGSEEEDAAREGTPGSPGRGREGPGEEHFEDMASD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ALAAMRAAAAGLGHPASPGGSEDGPPGSEEEDAAREGTPGSPGRGREGPGEEHFEDMASD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 EDMKPKWEEEEMEEDLGEDEEEEEEDYEDEEEEEDEEGLGPPGPASLGTTALFPRKAQPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EDMKPKWEEEEMEEDLGEDEEEEEEDYEDEEEEEDEEGLGPPGPASLGTTALFPRKAQPP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 QAFRGDGVPRVLGGQERPGPGPAHPGGAAHVAPQLQPPDHGDWTYEEQFKQLYELDGDPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QAFRGDGVPRVLGGQERPGPGPAHPGGAAHVAPQLQPPDHGDWTYEEQFKQLYELDGDPK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 RKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWREITKG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 LNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNELQAAIDSNRREGRRQSFGGSLFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNELQAAIDSNRREGRRQSFGGSLFA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 YSPGGAHGMLSSPKLPVSSLGLAASTNGSSITPAPKIKKEEDSAIPITVPGRLPVSLAGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 YSPGGAHGMLSSPKLPVSSLGLAASTNGSSITPAPKIKKEEDSAIPITVPGRLPVSLAGH
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB7 PVVAAQAAAVQAAAAQAAVAAQAAALEQLREKLESAEPPEKKMALVADEQQRLMQRALQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PVVAAQAAAVQAAAAQAAVAAQAAALEQLREKLESAEPPEKKMALVADEQQRLMQRALQQ
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB7 NFLAMAAQLPMSIRINSQASESRQDSAVNLTGTNGSNSISMSVEINGIMYTGVLFAQPPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 NFLAMAAQLPMSIRINSQASESRQDSAVNLTGTNGSNSISMSVEINGIMYTGVLFAQPPA
490 500 510 520 530 540
550 560 570 580 590
pF1KB7 PTPTSAPNKGGGGGGSSSSNAGGRGGNTGTSGGQAGPAGLSTPSTSTSNNSLP
:::::::::::::::.:::::::::::::::::::::::::::::::::::::
CCDS12 PTPTSAPNKGGGGGGGSSSNAGGRGGNTGTSGGQAGPAGLSTPSTSTSNNSLP
550 560 570 580 590
>>CCDS76777.1 ARID3B gene_id:10620|Hs108|chr15 (561 aa)
initn: 1157 init1: 778 opt: 1179 Z-score: 673.8 bits: 134.6 E(32554): 3.3e-31
Smith-Waterman score: 1231; 41.9% identity (63.2% similar) in 627 aa overlap (7-588:1-560)
10 20 30 40 50 60
pF1KB7 MKLQAVMETLLQRQQRARQELEARQQLPPDPPAAPPGRARAAPDEDREPESARMQRAQMA
:: : :.::. .:: .: :: . :: .. .:..::.
CCDS76 MEPLQQQQQQ-------QQQQQKQPHLAP------LQMDAREKQGQQMREAQF-
10 20 30 40
70 80 90 100 110
pF1KB7 ALAAMRAAAAGLGHPASPGGSEDGPPGSEEEDAAREGTPGSPGRGREGPGE---EHFEDM
: :.. .. .:. ... : :: :: .: .: : . ::
CCDS76 -LYAQKLVT----QPTLLSATAGRPSGS---------TPLGP-LARVPPTAAVAQVFER-
50 60 70 80
120 130 140 150 160 170
pF1KB7 ASDEDMKPKWEEEEMEEDLGEDEEEEEEDYEDEEEEE--DEEGLGPPGPASLGTTALFPR
.. . .:. :. .:.. :.:: : . : . . . .. : . :.:
CCDS76 -GNMNSEPEEEDGGLEDEDGDDEVAEVAEKETQAASKYFHVQKVARQDPRVAPMSNLLPA
90 100 110 120 130 140
180 190 200 210 220 230
pF1KB7 KAQPPQAFRGDGVPRVLGGQERPGPGPAHPGGAAHVAPQLQPPDHGDWTYEEQFKQ----
. ::. : : . : :....:... . .:. .::.::
CCDS76 PGLPPH-----------GQQAKED----HTKDASKASPSVSTAGQPNWNLDEQLKQNGGL
150 160 170 180
240 250 260 270
pF1KB7 --------------------LYELDGDPKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLD
::::::::.::::::::: ::::::::.:::::::::.::
CCDS76 AWSDDADGGRGREISRDFAKLYELDGDPERKEFLDDLFVFMQKRGTPINRIPIMAKQILD
190 200 210 220 230 240
280 290 300 310 320 330
pF1KB7 LFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRG
:.::: ::::::::::.::::.:::::::::::::::::::::::::::::: :::::..
CCDS76 LYMLYKLVTEKGGLVEIINKKIWREITKGLNLPTSITSAAFTLRTQYMKYLYAYECEKKA
250 260 270 280 290 300
340 350 360 370 380
pF1KB7 LSNPNELQAAIDSNRREGRRQSFGGSLFAYSPG--------GAHGMLSSPKL--PVSSLG
::.: :::::::.::::::: :...:::.:::. :: ..:: ::. :. .::
CCDS76 LSSPAELQAAIDGNRREGRRPSYSSSLFGYSPAAATAAAAAGAPALLSPPKIRFPILGLG
310 320 330 340 350 360
390 400 410 420 430
pF1KB7 LAASTNGSS--ITPAPKIKKEEDSAIP-ITVPGRLPVSLAGHPVVAAQAAAVQAAAAQAA
...:: :: :.:: ..: . . . . ::.:: : ::. :. :
CCDS76 SSSGTNTSSPRISPATTLRKGDGAPVTTVPVPNRLAV-----PVTLASQQA---------
370 380 390 400 410
440 450 460 470 480 490
pF1KB7 VAAQAAALEQLREKLESAEPPEKKMALVADEQQRLMQRALQQNFLAMAAQLPMSIRINSQ
....::::::::.:::.:: ::: . ...:.:::.:.:.:.::..:: ::::.::::..
CCDS76 -GTRTAALEQLRERLESGEPAEKKASRLSEEEQRLVQQAFQRNFFSMARQLPMKIRINGR
420 430 440 450 460 470
500 510 520 530 540 550
pF1KB7 ASESRQDSAVNLTGTNGS-NSISMSVEINGIMYTGVLFAQPPAP--TPTSAPNKGGGGGG
: . . ::. :. :..: .::.:::.:.: :.:::::: :. ::: .. :...
CCDS76 AEDRAEASAAALNLTTSSIGSINMSVDIDGTTYAGVLFAQKPVVHLITGSAP-QSLGSSA
480 490 500 510 520 530
560 570 580 590
pF1KB7 SSSSNAGGRGGNTGTSGGQAGPAGLSTPSTSTSNNSLP
::::.. . :.. : :. . :::: :
CCDS76 SSSSSSHCSPSPTSSRGT---PS--AEPSTSWSL
540 550 560
>>CCDS10264.1 ARID3B gene_id:10620|Hs108|chr15 (560 aa)
initn: 1145 init1: 778 opt: 1170 Z-score: 668.8 bits: 133.7 E(32554): 6.2e-31
Smith-Waterman score: 1222; 41.8% identity (63.5% similar) in 627 aa overlap (7-588:1-559)
10 20 30 40 50 60
pF1KB7 MKLQAVMETLLQRQQRARQELEARQQLPPDPPAAPPGRARAAPDEDREPESARMQRAQMA
:: : :.::. .:: .: :: . :: .. .:..::.
CCDS10 MEPLQQQQQQ-------QQQQQKQPHLAP------LQMDAREKQGQQMREAQF-
10 20 30 40
70 80 90 100 110
pF1KB7 ALAAMRAAAAGLGHPASPGGSEDGPPGSEEEDAAREGTPGSPGRGREGPGE---EHFEDM
: :.. .. .:. ... : :: :: .: .: : . ::
CCDS10 -LYAQKLVT----QPTLLSATAGRPSGS---------TPLGP-LARVPPTAAVAQVFER-
50 60 70 80
120 130 140 150 160 170
pF1KB7 ASDEDMKPKWEEEEMEEDLGEDEEEEEEDYEDEEEEE--DEEGLGPPGPASLGTTALFPR
.. . .:. :. .:.. :.:: : . : . . . .. : . :.:
CCDS10 -GNMNSEPEEEDGGLEDEDGDDEVAEVAEKETQAASKYFHVQKVARQDPRVAPMSNLLPA
90 100 110 120 130 140
180 190 200 210 220 230
pF1KB7 KAQPPQAFRGDGVPRVLGGQERPGPGPAHPGGAAHVAPQLQPPDHGDWTYEEQFKQ----
. ::. : : . : :....:... . .:. .::.::
CCDS10 PGLPPH-----------GQQAKED----HTKDASKASPSVSTAGQPNWNLDEQLKQNGGL
150 160 170 180
240 250 260 270
pF1KB7 --------------------LYELDGDPKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLD
::::::::.::::::::: ::::::::.:::::::::.::
CCDS10 AWSDDADGGRGREISRDFAKLYELDGDPERKEFLDDLFVFMQKRGTPINRIPIMAKQILD
190 200 210 220 230 240
280 290 300 310 320 330
pF1KB7 LFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRG
:.::: ::::::::::.::::.:::::::::::::::::::::::::::::: :::::..
CCDS10 LYMLYKLVTEKGGLVEIINKKIWREITKGLNLPTSITSAAFTLRTQYMKYLYAYECEKKA
250 260 270 280 290 300
340 350 360 370 380
pF1KB7 LSNPNELQAAIDSNRREGRRQSFGGSLFAYSPG--------GAHGMLSSPKL--PVSSLG
::.: :::::::.::::::: :...:::.:::. :: ..:: ::. :. .::
CCDS10 LSSPAELQAAIDGNRREGRRPSYSSSLFGYSPAAATAAAAAGAPALLSPPKIRFPILGLG
310 320 330 340 350 360
390 400 410 420 430
pF1KB7 LAASTNGSS--ITPAPKIKKEEDSAIP-ITVPGRLPVSLAGHPVVAAQAAAVQAAAAQAA
...:: :: :.:: ..: . . . . ::.:: : ::. :. :
CCDS10 SSSGTNTSSPRISPATTLRKGDGAPVTTVPVPNRLAV-----PVTLASQQA---------
370 380 390 400 410
440 450 460 470 480 490
pF1KB7 VAAQAAALEQLREKLESAEPPEKKMALVADEQQRLMQRALQQNFLAMAAQLPMSIRINSQ
....::::::::.:::.:: ::: . ...:.:::.:.:.:.::..:: ::::.::::..
CCDS10 -GTRTAALEQLRERLESGEPAEKKASRLSEEEQRLVQQAFQRNFFSMARQLPMKIRINGR
420 430 440 450 460 470
500 510 520 530 540 550
pF1KB7 ASESRQDSA-VNLTGTNGSNSISMSVEINGIMYTGVLFAQPPAP--TPTSAPNKGGGGGG
.... ..: .::: :.. .::.:::.:.: :.:::::: :. ::: .. :...
CCDS10 EDRAEASAAALNLT-TSSIGSINMSVDIDGTTYAGVLFAQKPVVHLITGSAP-QSLGSSA
480 490 500 510 520 530
560 570 580 590
pF1KB7 SSSSNAGGRGGNTGTSGGQAGPAGLSTPSTSTSNNSLP
::::.. . :.. : :. . :::: :
CCDS10 SSSSSSHCSPSPTSSRGT---PS--AEPSTSWSL
540 550 560
>>CCDS35006.1 ARID3C gene_id:138715|Hs108|chr9 (412 aa)
initn: 1145 init1: 779 opt: 841 Z-score: 487.6 bits: 99.7 E(32554): 7.7e-21
Smith-Waterman score: 1007; 46.3% identity (63.5% similar) in 447 aa overlap (145-547:2-406)
120 130 140 150 160 170
pF1KB7 EDMASDEDMKPKWEEEEMEEDLGEDEEEEEEDYEDEEEEEDEEGLGPPGPAS--LGTTAL
: . .. . .:.:: .:: :
CCDS35 MEALQKQQAARLAQGVGPLAPACPLLPPQPP
10 20 30
180 190 200 210
pF1KB7 FP--RKAQPPQAFRG------------DGVPRVLGGQERPGPGPAHPGGAAHVAPQLQPP
.: : : :.. : : : .: :. . ..::. . .:. :::
CCDS35 LPDHRTLQAPEGALGNVGAEEEEDAEEDEEKREEAGAEEEAAEESRPGAQGPSSPSSQPP
40 50 60 70 80 90
220 230 240 250 260 270
pF1KB7 D-HG-DWTYEEQFKQLYELDGDPKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLY
: .::::::::::::::.::::::::::::::::::::::::.::::::::::. :.
CCDS35 GLHPHEWTYEEQFKQLYELDADPKRKEFLDDLFSFMQKRGTPVNRVPIMAKQVLDLYALF
100 110 120 130 140 150
280 290 300 310 320 330
pF1KB7 VLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPN
::: :::::::::.:.:::.:.::.:::.:::::::::::::::::::::: :.::.:.
CCDS35 RLVTAKGGLVEVINRKVWREVTRGLSLPTTITSAAFTLRTQYMKYLYPYECETRALSSPG
160 170 180 190 200 210
340 350 360 370 380
pF1KB7 ELQAAIDSNRREGRRQSFGGS-LFAYS---PGGAH----GMLSSPKLPVSSLGLA-ASTN
::::::::::::::::.. .. ::. . : ::. : .: :: : : .::.
CCDS35 ELQAAIDSNRREGRRQAYTATPLFGLAGPPPRGAQDPALGPGPAPPATQSSPGPAQGSTS
220 230 240 250 260 270
390 400 410 420 430 440
pF1KB7 G------SSITPAPKIKKEEDSAIPITVPGRLPVSLAGHPVVAAQAAAVQAAAAQAAVAA
: ....:.: ::::: :.:: . :::.:: :.
CCDS35 GLPAHACAQLSPSP-IKKEE-SGIPNPCLA-LPVGLALGPT-------------------
280 290 300
450 460 470 480 490 500
pF1KB7 QAAALEQLREKLESAEPPEKKMALVADEQQRLMQRALQQNFLAMAAQLPMSIRINSQASE
:::: :::::. .:.. . . . .:: . ..:. :
CCDS35 --------REKLAPEEPPEKRAVLMGPMDPP--RPCMPPSFLPRG-KVPLR--------E
310 320 330 340 350
510 520 530 540 550
pF1KB7 SRQDSAVNLTGTNGSNSISMSVEINGIMYTGVLFA--QP---------PAPTPTSAPNKG
: :. .::.:. : .::.:..::::..::::::: :: ::: :...:
CCDS35 ERLDGPLNLAGS-GISSINMALEINGVVYTGVLFARRQPVPASQGPTNPAPPPSTGPPSS
360 370 380 390 400
560 570 580 590
pF1KB7 GGGGGSSSSNAGGRGGNTGTSGGQAGPAGLSTPSTSTSNNSLP
CCDS35 ILP
410
593 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 06:13:53 2016 done: Sun Nov 6 06:13:53 2016
Total Scan time: 4.740 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]