FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7739, 436 aa
  1>>>pF1KB7739 436 - 436 aa - 436 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9346+/-0.000773; mu= 10.5381+/- 0.047
 mean_var=109.9984+/-21.847, 0's: 0 Z-trim(112.0): 15  B-trim: 65 in 1/51
 Lambda= 0.122287
 statistics sampled from 12869 (12875) to 12869 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.753), E-opt: 0.2 (0.395), width:  16
 Scan time:  3.350

The best scores are:                                      opt bits E(32554)
CCDS4950.1 GCM1 gene_id:8521|Hs108|chr6            ( 436) 3090 555.6 3.6e-158
CCDS4517.1 GCM2 gene_id:9247|Hs108|chr6            ( 506)  824 155.8 8.9e-38


>>CCDS4950.1 GCM1 gene_id:8521|Hs108|chr6                 (436 aa)
 initn: 3090 init1: 3090 opt: 3090  Z-score: 2953.2  bits: 555.6 E(32554): 3.6e-158
Smith-Waterman score: 3090; 100.0% identity (100.0% similar) in 436 aa overlap (1-436:1-436)

               10        20        30        40        50        60
pF1KB7 MEPDDFDSEDKEILSWDINDVKLPQNVKKTDWFQEWPDSYAKHIYSSEDKNAQRHLSSWA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 MEPDDFDSEDKEILSWDINDVKLPQNVKKTDWFQEWPDSYAKHIYSSEDKNAQRHLSSWA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 MRNTNNHNSRILKKSCLGVVVCGRDCLAEEGRKIYLRPAICDKARQKQQRKRCPNCDGPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 MRNTNNHNSRILKKSCLGVVVCGRDCLAEEGRKIYLRPAICDKARQKQQRKRCPNCDGPL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 KLIPCRGHGGFPVTNFWRHDGRFIFFQSKGEHDHPKPETKLEAEARRAMKKVNTAPSSVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 KLIPCRGHGGFPVTNFWRHDGRFIFFQSKGEHDHPKPETKLEAEARRAMKKVNTAPSSVS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 LSLKGSTETRSLPGETQSQGSLPLTWSFQEGVQLPGSYSGHLIANTPQQNSLNDCFSFSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 LSLKGSTETRSLPGETQSQGSLPLTWSFQEGVQLPGSYSGHLIANTPQQNSLNDCFSFSK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 SYGLGGITDLTDQTSTVDPMKLYEKRKLSSSRTYSSGDLLPPSASGVYSDHGDLQAWSKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 SYGLGGITDLTDQTSTVDPMKLYEKRKLSSSRTYSSGDLLPPSASGVYSDHGDLQAWSKN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 AALGRNHLADNCYSNYPFPLTSWPCSFSPSQNSSEPFYQQLPLEPPAAKTGCPPLWPNPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 AALGRNHLADNCYSNYPFPLTSWPCSFSPSQNSSEPFYQQLPLEPPAAKTGCPPLWPNPA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 GNLYEEKVHVDFNSYVQSPAYHSPQEDPFLFTYASHPHQQYSLPSKSSKWDFEEEMTYLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 GNLYEEKVHVDFNSYVQSPAYHSPQEDPFLFTYASHPHQQYSLPSKSSKWDFEEEMTYLG
              370       380       390       400       410       420

              430      
pF1KB7 LDHCNNDMLLNLCPLR
       ::::::::::::::::
CCDS49 LDHCNNDMLLNLCPLR
              430      

>>CCDS4517.1 GCM2 gene_id:9247|Hs108|chr6                 (506 aa)
 initn: 824 init1: 797 opt: 824  Z-score: 791.7  bits: 155.8 E(32554): 8.9e-38
Smith-Waterman score: 838; 39.2% identity (61.1% similar) in 388 aa overlap (14-384:19-397)

                    10        20        30        40        50     
pF1KB7      MEPDDFDSEDKEILSWDINDVKLPQNVKKTDWFQEWPDSYAKHIYSSEDKNAQRH
                         ::::::: ..::..   : :.::::.:.. ::::..:.::::
CCDS45 MPAAAVQEAVGVCSYGMQLSWDINDPQMPQELALFDQFREWPDGYVRFIYSSDEKKAQRH
               10        20        30        40        50        60

          60        70        80        90       100       110     
pF1KB7 LSSWAMRNTNNHNSRILKKSCLGVVVCGRDCLAEEGRKIYLRPAICDKARQKQQRKRCPN
       ::.::::::::::..:::::::::::: . :   .: .. :::::::::: :::.: :::
CCDS45 LSGWAMRNTNNHNGHILKKSCLGVVVCTQACTLPDGSRLQLRPAICDKARLKQQKKACPN
               70        80        90       100       110       120

         120       130       140       150       160       170     
pF1KB7 CDGPLKLIPCRGHGGFPVTNFWRHDGRFIFFQSKGEHDHPKPETKLEAEARRAMKKVNTA
       : . :.:::::::.:.::::::: ::  ::::.:: ::::.::.: :.::::.  : . :
CCDS45 CHSALELIPCRGHSGYPVTNFWRLDGNAIFFQAKGVHDHPRPESKSETEARRSAIKRQMA
              130       140       150       160       170       180

         180       190       200       210       220       230     
pF1KB7 PSSVSLSLKGSTETRSLPGETQSQGSLPLTWSFQEGVQLPGSYSGHLIANTPQQNSLNDC
           :.    . . :    :.... .   .  :..   : .  .  ....:      . :
CCDS45 ----SFYQPQKKRIR----ESEAEENQDSSGHFSNIPPLENPEDFDIVTETSFPIPGQPC
                  190           200       210       220       230  

         240       250        260       270       280              
pF1KB7 FSFSKSYGLGGITDL-TDQTSTVDPMKLYEKRKLSSSRTYSSGDLLPPSASG------VY
        :: ::    .  :: : : . . :.. : . ..   :   : .:  :. ..      .:
CCDS45 PSFPKSDVYKATCDLATFQGDKMPPFQKYSSPRIYLPRPPCSYELANPGYTNSSPYPTLY
            240       250       260       270       280       290  

      290       300       310         320            330           
pF1KB7 SDHGDLQAWSKNAALGRNHLADNCYSNYP--FPLTS----W-PCSFSPS--QNSSEPFYQ
       .:  ..   .  . :.  .   : ::.:   : .:.    : :   .::  . ...  .:
CCDS45 KDSTSIPNDTDWVHLNTLQCNVNSYSSYERSFDFTNKQHGWKPALGKPSLVERTNHGQFQ
            300       310       320       330       340       350  

     340        350       360       370       380       390        
pF1KB7 QLPLEPP-AAKTGCPPLWPNPAGNLYEEKVHVDFNSYVQSPAYHSPQEDPFLFTYASHPH
        .  .:    .  :  :   : :    . : .  .. :.  ::. :              
CCDS45 AMATRPYYNPELPCRYLTTPPPGAPALQTV-ITTTTKVSYQAYQPPAMKYSDSVREVKSL
            360       370       380        390       400       410 

      400       410       420       430                            
pF1KB7 QQYSLPSKSSKWDFEEEMTYLGLDHCNNDMLLNLCPLR                      
                                                                   
CCDS45 SSCNYAPEDTGMSVYPEPWGPPVTVTRAASPSGPPPMKIAGDCRAIRPTVAIPHEPVSSR
             420       430       440       450       460       470 




436 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 05:40:19 2016 done: Sun Nov  6 05:40:20 2016
 Total Scan time:  3.350 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]