Result of FASTA (ccds) for
pFN21AB7696
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7696, 414 aa
1>>>pF1KB7696 414 - 414 aa - 414 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.2370+/-0.000985; mu= 3.8018+/- 0.060
mean_var=293.9560+/-59.495, 0's: 0 Z-trim(116.1): 117 B-trim: 154 in 1/52
Lambda= 0.074805
statistics sampled from 16539 (16656) to 16539 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.801), E-opt: 0.2 (0.512), width: 16
Scan time: 3.460
The best scores are: opt bits E(32554)
CCDS10375.1 NR2F2 gene_id:7026|Hs108|chr15 ( 414) 2871 322.6 4.3e-88
CCDS4068.1 NR2F1 gene_id:7025|Hs108|chr5 ( 423) 2459 278.2 1.1e-74
CCDS45358.1 NR2F2 gene_id:7026|Hs108|chr15 ( 281) 1781 204.8 8.4e-53
CCDS45359.1 NR2F2 gene_id:7026|Hs108|chr15 ( 261) 1740 200.3 1.7e-51
CCDS12352.1 NR2F6 gene_id:2063|Hs108|chr19 ( 404) 1200 142.3 8.1e-34
CCDS35172.1 RXRA gene_id:6256|Hs108|chr9 ( 462) 1001 120.8 2.6e-27
CCDS4768.1 RXRB gene_id:6257|Hs108|chr6 ( 533) 978 118.4 1.6e-26
CCDS1248.1 RXRG gene_id:6258|Hs108|chr1 ( 463) 976 118.2 1.7e-26
CCDS59007.1 RXRB gene_id:6257|Hs108|chr6 ( 537) 975 118.1 2e-26
CCDS72970.1 RXRG gene_id:6258|Hs108|chr1 ( 340) 958 116.1 5.3e-26
CCDS74728.1 HNF4A gene_id:3172|Hs108|chr20 ( 449) 798 98.9 1e-20
CCDS46604.1 HNF4A gene_id:3172|Hs108|chr20 ( 442) 788 97.8 2.1e-20
CCDS42876.1 HNF4A gene_id:3172|Hs108|chr20 ( 452) 788 97.9 2.1e-20
CCDS46605.1 HNF4A gene_id:3172|Hs108|chr20 ( 464) 787 97.8 2.3e-20
CCDS13330.1 HNF4A gene_id:3172|Hs108|chr20 ( 474) 787 97.8 2.4e-20
CCDS68131.1 HNF4A gene_id:3172|Hs108|chr20 ( 395) 776 96.5 4.8e-20
CCDS13331.1 HNF4A gene_id:3172|Hs108|chr20 ( 417) 775 96.4 5.3e-20
CCDS83303.1 HNF4G gene_id:3174|Hs108|chr8 ( 408) 773 96.2 6.1e-20
CCDS6220.2 HNF4G gene_id:3174|Hs108|chr8 ( 445) 773 96.2 6.5e-20
CCDS9850.2 ESRRB gene_id:2103|Hs108|chr14 ( 508) 678 86.0 8.7e-17
CCDS1517.1 ESRRG gene_id:2104|Hs108|chr1 ( 435) 669 85.0 1.5e-16
CCDS41468.1 ESRRG gene_id:2104|Hs108|chr1 ( 458) 669 85.0 1.6e-16
CCDS8850.1 RARG gene_id:5916|Hs108|chr12 ( 454) 608 78.4 1.5e-14
CCDS73750.1 NR2E3 gene_id:10002|Hs108|chr15 ( 410) 593 76.8 4.3e-14
CCDS8818.1 NR4A1 gene_id:3164|Hs108|chr12 ( 598) 595 77.1 4.8e-14
CCDS55828.1 NR4A1 gene_id:3164|Hs108|chr12 ( 611) 595 77.2 4.9e-14
CCDS11366.1 RARA gene_id:5914|Hs108|chr17 ( 462) 592 76.7 5e-14
CCDS73471.1 NR4A1 gene_id:3164|Hs108|chr12 ( 652) 595 77.2 5.1e-14
CCDS41790.1 RARG gene_id:5916|Hs108|chr12 ( 443) 590 76.5 5.7e-14
CCDS42317.1 RARA gene_id:5914|Hs108|chr17 ( 457) 584 75.8 9.1e-14
CCDS58236.1 RARG gene_id:5916|Hs108|chr12 ( 382) 582 75.5 9.3e-14
CCDS2642.1 RARB gene_id:5915|Hs108|chr3 ( 448) 568 74.1 3e-13
CCDS5063.1 NR2E1 gene_id:7101|Hs108|chr6 ( 385) 541 71.1 2e-12
CCDS69165.1 NR2E1 gene_id:7101|Hs108|chr6 ( 422) 541 71.2 2.2e-12
CCDS2201.1 NR4A2 gene_id:4929|Hs108|chr2 ( 598) 518 68.8 1.5e-11
>>CCDS10375.1 NR2F2 gene_id:7026|Hs108|chr15 (414 aa)
initn: 2871 init1: 2871 opt: 2871 Z-score: 1695.1 bits: 322.6 E(32554): 4.3e-88
Smith-Waterman score: 2871; 100.0% identity (100.0% similar) in 414 aa overlap (1-414:1-414)
10 20 30 40 50 60
pF1KB7 MAMVVSTWRDPQDEVPGSQGSQASQAPPVPGPPPGAPHTPQTPGQGGPASTPAQTAAGGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MAMVVSTWRDPQDEVPGSQGSQASQAPPVPGPPPGAPHTPQTPGQGGPASTPAQTAAGGQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 GGPGGPGSDKQQQQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GGPGGPGSDKQQQQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 CPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQPTHGQFALTNGDPLNCHSYLSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 CPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQPTHGQFALTNGDPLNCHSYLSG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 YISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 YISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 QVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 KLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRF
310 320 330 340 350 360
370 380 390 400 410
pF1KB7 GKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNWPYMAIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNWPYMAIQ
370 380 390 400 410
>>CCDS4068.1 NR2F1 gene_id:7025|Hs108|chr5 (423 aa)
initn: 2398 init1: 2271 opt: 2459 Z-score: 1454.7 bits: 278.2 E(32554): 1.1e-74
Smith-Waterman score: 2459; 85.9% identity (91.1% similar) in 426 aa overlap (1-414:1-421)
10 20 30 40
pF1KB7 MAMVVSTWRDPQDEVPGSQG---SQASQAPPVPG---------PPPGAPHTPQTPGQGGP
::::::.::::::.: :.. . :.:: : ::::::::::: :
CCDS40 MAMVVSSWRDPQDDVAGGNPGGPNPAAQAARGGGGGAGEQQQQAGSGAPHTPQTPGQPGA
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB7 ASTPAQTAAGGQGGPGGPGSDKQQQQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVR
.::. .. ::: ::. :.:::::::::::::::::::::::::::::::::::
CCDS40 PATPGTAGDKGQGPPGS-----GQSQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVR
70 80 90 100 110
110 120 130 140 150 160
pF1KB7 RNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQPTHGQFALTN
:::.:::::::::::::::::::::::::::::::::::::::::::::::. ::.::::
CCDS40 RNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQPNPGQYALTN
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB7 GDPLNCHSYLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWAR
::::: : :::::::::::::::::::.::::::::::::::::::::::.:::::::::
CCDS40 GDPLNGHCYLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLLFSAVEWAR
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB7 NIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAF
::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::
CCDS40 NIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAF
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB7 MDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEY
::::::::::::::::::::::::::::::::::::::::::.::.::::::::::::::
CCDS40 MDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEKSQCALEEY
300 310 320 330 340 350
350 360 370 380 390 400
pF1KB7 VRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNW
:::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS40 VRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNW
360 370 380 390 400 410
410
pF1KB7 PYMAIQ
:::.::
CCDS40 PYMSIQCS
420
>>CCDS45358.1 NR2F2 gene_id:7026|Hs108|chr15 (281 aa)
initn: 1779 init1: 1779 opt: 1781 Z-score: 1061.4 bits: 204.8 E(32554): 8.4e-53
Smith-Waterman score: 1781; 97.8% identity (98.2% similar) in 275 aa overlap (140-414:7-281)
110 120 130 140 150 160
pF1KB7 NLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQPTHGQFALTNG
:. : ::::::::::::::::::::::
CCDS45 MQAVWDLEQGKYGFAVQRGRMPPTQPTHGQFALTNG
10 20 30
170 180 190 200 210 220
pF1KB7 DPLNCHSYLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 DPLNCHSYLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARN
40 50 60 70 80 90
230 240 250 260 270 280
pF1KB7 IPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 IPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFM
100 110 120 130 140 150
290 300 310 320 330 340
pF1KB7 DHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 DHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYV
160 170 180 190 200 210
350 360 370 380 390 400
pF1KB7 RSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNWP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNWP
220 230 240 250 260 270
410
pF1KB7 YMAIQ
:::::
CCDS45 YMAIQ
280
>>CCDS45359.1 NR2F2 gene_id:7026|Hs108|chr15 (261 aa)
initn: 1740 init1: 1740 opt: 1740 Z-score: 1037.9 bits: 200.3 E(32554): 1.7e-51
Smith-Waterman score: 1740; 100.0% identity (100.0% similar) in 261 aa overlap (154-414:1-261)
130 140 150 160 170 180
pF1KB7 DQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQPTHGQFALTNGDPLNCHSYLSGYIS
::::::::::::::::::::::::::::::
CCDS45 MPPTQPTHGQFALTNGDPLNCHSYLSGYIS
10 20 30
190 200 210 220 230 240
pF1KB7 LLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQITDQVA
40 50 60 70 80 90
250 260 270 280 290 300
pF1KB7 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLK
100 110 120 130 140 150
310 320 330 340 350 360
pF1KB7 ALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKL
160 170 180 190 200 210
370 380 390 400 410
pF1KB7 LLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNWPYMAIQ
:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNWPYMAIQ
220 230 240 250 260
>>CCDS12352.1 NR2F6 gene_id:2063|Hs108|chr19 (404 aa)
initn: 1725 init1: 1111 opt: 1200 Z-score: 720.6 bits: 142.3 E(32554): 8.1e-34
Smith-Waterman score: 1701; 64.2% identity (81.5% similar) in 400 aa overlap (31-414:9-404)
10 20 30 40 50
pF1KB7 MAMVVSTWRDPQDEVPGSQGSQASQAPPVPGPPPGAPHTPQTPGQGGPASTPAQTAAG-G
: : : . . : : : .. ..:. :
CCDS12 MAMVTGGWGGPGGDTNGVDKAG-GYPRAAEDDSASPPG
10 20 30
60 70 80 90 100 110
pF1KB7 QGGPGGPGSDKQQQQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANR
.. . :: :... ...:::::::::::::: :::::::::::::.:::::::::.::
CCDS12 AASDAEPG-DEERPGLQVDCVVCGDKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNR
40 50 60 70 80 90
120 130 140 150 160 170
pF1KB7 NCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQPTHGQFALTNGDP--------
.: :::::::::::::::::..::::.:::::::.: . : : : ..:.:
CCDS12 DCQIDQHHRNQCQYCRLKKCFRVGMRKEAVQRGRIPHSLP--GAVAASSGSPPGSALAAV
100 110 120 130 140 150
180 190 200 210 220
pF1KB7 -----LNCHSYLSGYISLLLRAEPYPTS--RFGSQCMQPNNIMGIENICELAARMLFSAV
: . .: :. ::::::::.. :::. . ..::.:.::::::.:::.:
CCDS12 ASGGDLFPGQPVSELIAQLLRAEPYPAAAGRFGAGGGAAGAVLGIDNVCELAARLLFSTV
160 170 180 190 200 210
230 240 250 260 270 280
pF1KB7 EWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADR
::::. ::::.: ..::::::::.::::::::::: ..:::.:::::::::::.::.:.:
CCDS12 EWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAER
220 230 240 250 260 270
290 300 310 320 330 340
pF1KB7 VVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCA
.:::::..: :::::.:: :.::::::.:::::.::: ::::::: :::::::::.: :
CCDS12 AVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQVA
280 290 300 310 320 330
350 360 370 380 390 400
pF1KB7 LEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGS
: ::::.:::.:: :::.::::::.::.: .:.: ::::.::::::::::::::::::::
CCDS12 LTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGKTPIETLIRDMLLSGS
340 350 360 370 380 390
410
pF1KB7 SFNWPYMAIQ
.::::: . :
CCDS12 TFNWPYGSGQ
400
>>CCDS35172.1 RXRA gene_id:6256|Hs108|chr9 (462 aa)
initn: 566 init1: 532 opt: 1001 Z-score: 603.8 bits: 120.8 E(32554): 2.6e-27
Smith-Waterman score: 1001; 39.9% identity (70.6% similar) in 398 aa overlap (11-400:64-455)
10 20 30
pF1KB7 MAMVVSTWRDPQDEVPGSQGSQASQAPPVP--GPPPGAPH
: . . . .: .. ..: .: : :.:.
CCDS35 HPSLGPGIGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQ
40 50 60 70 80 90
40 50 60 70 80 90
pF1KB7 --TPQTPGQGGPASTPAQTAAGGQGGPGGPGSDKQQQQQHIECVVCGDKSSGKHYGQFTC
.:..: ... : : :. :... . .:: :..:::.::::::: ..:
CCDS35 LSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHI-CAICGDRSSGKHYGVYSC
100 110 120 130 140 150
100 110 120 130 140 150
pF1KB7 EGCKSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPP
::::.::::.::..:.:::: :..: ::...::.::::: .::: .::.:::::. :.
CCDS35 EGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRG
160 170 180 190 200 210
160 170 180 190 200 210
pF1KB7 TQPTHGQFALTNG--DPLNCHSYLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICE
. .... :.. . . . : . ... ..: : . .: . .::. . :::.
CCDS35 KDRNENEVESTSSANEDMPVERILEAELAVEPKTETYVEANMGLNPSSPND--PVTNICQ
220 230 240 250 260 270
220 230 240 250 260 270
pF1KB7 LAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAG
: ..::. ::::. :: : .: . ::: ::: :.::.. . .. :. .. . :::. :
CCDS35 AADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLAT-G
280 290 300 310 320
280 290 300 310 320 330
pF1KB7 LHASPMSADR--VVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVA
::. :: : :..: :.. : : :.. ...:..: .::.:::::. :. :::. :
CCDS35 LHVHRNSAHSAGVGAIFD--RVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPA
330 340 350 360 370 380
340 350 360 370 380 390
pF1KB7 HVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPI
.::.:.:: .:: : . .::.:: ::.:::::::.::... . .:.::: .:.: :::
CCDS35 EVEALREKVYASLEAYCKHKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPI
390 400 410 420 430 440
400 410
pF1KB7 ETLIRDMLLSGSSFNWPYMAIQ
.:.. .::
CCDS35 DTFLMEMLEAPHQMT
450 460
>>CCDS4768.1 RXRB gene_id:6257|Hs108|chr6 (533 aa)
initn: 733 init1: 630 opt: 978 Z-score: 589.6 bits: 118.4 E(32554): 1.6e-26
Smith-Waterman score: 999; 38.8% identity (64.2% similar) in 433 aa overlap (11-400:106-526)
10 20 30
pF1KB7 MAMVVSTWRDPQDEVPGSQGSQASQAPPVPGPPPGAPHT-
: . .:. :: : ::.: :: :.:
CCDS47 SGRDSRSPDSSSPNPLPQGVPPPSPPGPPLPPSTAPSLGGSGAPPPPPMPPPPLGSPFPV
80 90 100 110 120 130
40 50 60
pF1KB7 ------------PQTPGQGGPASTP-----AQTAAGGQGGP-------------------
: :: .::.:.: .. .::.: :
CCDS47 ISSSMGSPGLPPPAPPGFSGPVSSPQINSTVSLPGGGSGPPEDVKPPVLGVRGLHCPPPP
140 150 160 170 180 190
70 80 90 100 110 120
pF1KB7 GGPGSDKQQQQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRNCPI
::::. :. :..:::.::::::: ..:::::.::::..:..:.:.:: :..: .
CCDS47 GGPGAGKRL------CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTV
200 210 220 230 240
130 140 150 160 170 180
pF1KB7 DQHHRNQCQYCRLKKCLKVGMRREAVQRGRM-PPTQPTHGQFALTNGDPLNCHSYLSGYI
:...::.::::: .::: .::.:::::. :. . :. : . . : . .
CCDS47 DKRQRNRCQYCRYQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPEEMPVDRILEAEL
250 260 270 280 290 300
190 200 210 220 230
pF1KB7 SLLLRAEPY---PTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQIT
.. ... : . :: .::. . :::. : ..::. ::::. :: : .: .
CCDS47 AVEQKSDQGVEGPGGTGGSGS-SPND--PVTNICQAADKQLFTLVEWAKRIPHFSSLPLD
310 320 330 340 350 360
240 250 260 270 280 290
pF1KB7 DQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADR--VVAFMDHIRIFQE
::: ::: :.::.. . .. :. .. . :::. :::. :: : :..: :.. :
CCDS47 DQVILLRAGWNELLIASFSHRSIDVRDGILLAT-GLHVHRNSAHSAGVGAIFD--RVLTE
370 380 390 400 410 420
300 310 320 330 340 350
pF1KB7 QVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQP
: :.. ...:..: .::.::.::. :: :::. ..:: :.:: .:: : ...::.:
CCDS47 LVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPEQQ
430 440 450 460 470 480
360 370 380 390 400 410
pF1KB7 TRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNWPYMAIQ
::.:::::::.::... . .:.::: .:.: :::.:.. .::
CCDS47 GRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQLA
490 500 510 520 530
>>CCDS1248.1 RXRG gene_id:6258|Hs108|chr1 (463 aa)
initn: 822 init1: 389 opt: 976 Z-score: 589.2 bits: 118.2 E(32554): 1.7e-26
Smith-Waterman score: 976; 40.9% identity (69.6% similar) in 391 aa overlap (23-400:75-456)
10 20 30 40
pF1KB7 MAMVVSTWRDPQDEVPGSQGSQASQAPPVPG--PPPG----APHTPQTPGQG
....:: . ::: :: . : .
CCDS12 YTDTPVSAPRTLSAVGTPLNALGSPYRVITSAMGPPSGALAAPPGINLVAPPSSQLNVVN
50 60 70 80 90 100
50 60 70 80 90 100
pF1KB7 GPASTPAQTAAGGQGGPGG---PGSDKQQQQQHIECVVCGDKSSGKHYGQFTCEGCKSFF
. .:. : : :. :... . .:: :..:::.::::::: ..:::::.::
CCDS12 SVSSSEDIKPLPGLPGIGNMNYPSTSPGSLVKHI-CAICGDRSSGKHYGVYSCEGCKGFF
110 120 130 140 150 160
110 120 130 140 150 160
pF1KB7 KRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGRMPPTQPTH
::..:..: :::: :..: ::...::.::::: .::: .::.::::: : : ..
CCDS12 KRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQRSRERAESE
170 180 190 200 210 220
170 180 190 200 210 220
pF1KB7 GQFALTNGDPLNCHSYLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARMLF
.. : .. . . . : . ... :: : .:.. :. .. . :::. : ..::
CCDS12 AECATSGHEDMPVERILEAELAV----EP-KTESYGDMNMENSTNDPVTNICHAADKQLF
230 240 250 260 270
230 240 250 260 270 280
pF1KB7 SAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMS
. ::::. :: : :: . ::: ::: :.::.. . .. :. .. . :::. :::. :
CCDS12 TLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLAT-GLHVHRSS
280 290 300 310 320 330
290 300 310 320 330
pF1KB7 ADR--VVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQE
: : ...: :.. : : :.: ...:..: .::.:::::. :: :::. ..::.:.:
CCDS12 AHSAGVGSIFD--RVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNPSEVETLRE
340 350 360 370 380 390
340 350 360 370 380 390
pF1KB7 KSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDM
: .:: :....::.:: ::.:::::::.::... . .:.::: .:.: :::.:.. .:
CCDS12 KVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM
400 410 420 430 440 450
400 410
pF1KB7 LLSGSSFNWPYMAIQ
:
CCDS12 LETPLQIT
460
>>CCDS59007.1 RXRB gene_id:6257|Hs108|chr6 (537 aa)
initn: 1014 init1: 408 opt: 975 Z-score: 587.8 bits: 118.1 E(32554): 2e-26
Smith-Waterman score: 996; 38.6% identity (64.1% similar) in 435 aa overlap (11-400:106-530)
10 20 30
pF1KB7 MAMVVSTWRDPQDEVPGSQGSQASQAPPVPGPPPGAPHT-
: . .:. :: : ::.: :: :.:
CCDS59 SGRDSRSPDSSSPNPLPQGVPPPSPPGPPLPPSTAPSLGGSGAPPPPPMPPPPLGSPFPV
80 90 100 110 120 130
40 50 60
pF1KB7 ------------PQTPGQGGPASTP-----AQTAAGGQGGP-------------------
: :: .::.:.: .. .::.: :
CCDS59 ISSSMGSPGLPPPAPPGFSGPVSSPQINSTVSLPGGGSGPPEDVKPPVLGVRGLHCPPPP
140 150 160 170 180 190
70 80 90 100 110 120
pF1KB7 GGPGSDKQQQQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLSYTCRANRNCPI
::::. :. :..:::.::::::: ..:::::.::::..:..:.:.:: :..: .
CCDS59 GGPGAGKRL------CAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKDCTV
200 210 220 230 240
130 140 150 160 170 180
pF1KB7 DQHHRNQCQYCRLKKCLKVGMRREAVQRGRM-PPTQPTHGQFALTNGDPLNCHSYLSGYI
:...::.::::: .::: .::.:::::. :. . :. : . . : . .
CCDS59 DKRQRNRCQYCRYQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPEEMPVDRILEAEL
250 260 270 280 290 300
190 200 210 220 230
pF1KB7 SLLLRAEPY---PTSRFGSQCMQPNNIMGIENICELAARMLFSAVEWARNIPFFPDLQIT
.. ... : . :: .::. . :::. : ..::. ::::. :: : .: .
CCDS59 AVEQKSDQGVEGPGGTGGSGS-SPND--PVTNICQAADKQLFTLVEWAKRIPHFSSLPLD
310 320 330 340 350 360
240 250 260 270 280 290
pF1KB7 DQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADR--VVAFMDHI--RIF
::: ::: :.::.. . .. :. .. . :::. :::. :: : :..:. :..
CCDS59 DQVILLRAGWNELLIASFSHRSIDVRDGILLAT-GLHVHRNSAHSAGVGAIFDRSLSRVL
370 380 390 400 410 420
300 310 320 330 340 350
pF1KB7 QEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEKSQCALEEYVRSQYPN
: : :.. ...:..: .::.::.::. :: :::. ..:: :.:: .:: : ...::.
CCDS59 TELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYCKQKYPE
430 440 450 460 470 480
360 370 380 390 400 410
pF1KB7 QPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNWPYMAIQ
: ::.:::::::.::... . .:.::: .:.: :::.:.. .::
CCDS59 QQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQLA
490 500 510 520 530
>>CCDS72970.1 RXRG gene_id:6258|Hs108|chr1 (340 aa)
initn: 788 init1: 389 opt: 958 Z-score: 580.4 bits: 116.1 E(32554): 5.3e-26
Smith-Waterman score: 958; 43.7% identity (73.5% similar) in 339 aa overlap (66-400:4-333)
40 50 60 70 80 90
pF1KB7 APHTPQTPGQGGPASTPAQTAAGGQGGPGGPGSDKQQQQQHIECVVCGDKSSGKHYGQFT
:... . .:: :..:::.::::::: ..
CCDS72 MNYPSTSPGSLVKHI-CAICGDRSSGKHYGVYS
10 20 30
100 110 120 130 140 150
pF1KB7 CEGCKSFFKRSVRRNLSYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQ--RGR
:::::.::::..:..: :::: :..: ::...::.::::: .::: .::.::::: : :
CCDS72 CEGCKGFFKRTIRKDLIYTCRDNKDCLIDKRQRNRCQYCRYQKCLVMGMKREAVQEERQR
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB7 MPPTQPTHGQFALTNGDPLNCHSYLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENIC
.... : .. . . . : . ... :: : .:.. :. .. . :::
CCDS72 SRERAESEAECATSGHEDMPVERILEAELAV----EP-KTESYGDMNMENSTNDPVTNIC
100 110 120 130 140
220 230 240 250 260 270
pF1KB7 ELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAA
. : ..::. ::::. :: : :: . ::: ::: :.::.. . .. :. .. . :::.
CCDS72 HAADKQLFTLVEWAKRIPHFSDLTLEDQVILLRAGWNELLIASFSHRSVSVQDGILLAT-
150 160 170 180 190 200
280 290 300 310 320 330
pF1KB7 GLHASPMSADR--VVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDV
:::. :: : ...: :.. : : :.: ...:..: .::.:::::. :: :::.
CCDS72 GLHVHRSSAHSAGVGSIFD--RVLTELVSKMKDMQMDKSELGCLRAIVLFNPDAKGLSNP
210 220 230 240 250 260
340 350 360 370 380 390
pF1KB7 AHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTP
..::.:.:: .:: :....::.:: ::.:::::::.::... . .:.::: .:.: ::
CCDS72 SEVETLREKVYATLEAYTKQKYPEQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTP
270 280 290 300 310 320
400 410
pF1KB7 IETLIRDMLLSGSSFNWPYMAIQ
:.:.. .::
CCDS72 IDTFLMEMLETPLQIT
330 340
414 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 21:24:14 2016 done: Sun Nov 6 21:24:15 2016
Total Scan time: 3.460 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]