Result of FASTA (omim) for
pFN21AB7681
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7681, 343 aa
1>>>pF1KB7681 343 - 343 aa - 343 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.9983+/-0.000378; mu= -2.4615+/- 0.024
mean_var=372.8821+/-75.005, 0's: 0 Z-trim(124.9): 165 B-trim: 884 in 2/57
Lambda= 0.066418
statistics sampled from 47203 (47420) to 47203 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.834), E-opt: 0.2 (0.556), width: 16
Scan time: 8.660
The best scores are: opt bits E(85289)
NP_006483 (OMIM: 136760,606014) homeobox protein a ( 343) 2468 249.7 7e-66
NP_068745 (OMIM: 605420,609597,613451,615529) home ( 411) 721 82.3 2e-15
XP_011537084 (OMIM: 601527,613456) PREDICTED: ALX ( 231) 686 78.7 1.4e-14
NP_008913 (OMIM: 601527,613456) ALX homeobox prote ( 326) 686 78.9 1.7e-14
NP_038463 (OMIM: 601881,611038) retinal homeobox p ( 346) 396 51.1 4.1e-06
NP_620689 (OMIM: 300004,300215,300382,300419,30835 ( 562) 394 51.2 6.5e-06
NP_003915 (OMIM: 209880,603851,613013) paired meso ( 314) 385 50.0 8.1e-06
NP_001128726 (OMIM: 167410,268220) paired box prot ( 505) 385 50.2 1.1e-05
NP_039236 (OMIM: 167410,268220) paired box protein ( 518) 385 50.3 1.1e-05
NP_002575 (OMIM: 167410,268220) paired box protein ( 520) 385 50.3 1.1e-05
NP_001306003 (OMIM: 605726,610362,610381,613757) r ( 230) 376 49.0 1.2e-05
NP_005160 (OMIM: 602078,602753) paired mesoderm ho ( 284) 371 48.6 1.9e-05
NP_116142 (OMIM: 605726,610362,610381,613757) reti ( 184) 366 47.9 2e-05
NP_005020 (OMIM: 107250,602669,610623) pituitary h ( 302) 366 48.2 2.8e-05
NP_001263380 (OMIM: 606701) dorsal root ganglia ho ( 263) 360 47.5 3.8e-05
NP_057391 (OMIM: 604675) paired mesoderm homeobox ( 253) 356 47.1 4.8e-05
NP_878314 (OMIM: 142993,610092,610093) visual syst ( 361) 357 47.4 5.7e-05
NP_700476 (OMIM: 137600,180500,180550,601542,60422 ( 271) 353 46.9 6.1e-05
XP_011530329 (OMIM: 137600,180500,180550,601542,60 ( 271) 353 46.9 6.1e-05
NP_001191328 (OMIM: 137600,180500,180550,601542,60 ( 271) 353 46.9 6.1e-05
NP_001191327 (OMIM: 137600,180500,180550,601542,60 ( 317) 353 47.0 6.8e-05
NP_001191326 (OMIM: 137600,180500,180550,601542,60 ( 317) 353 47.0 6.8e-05
NP_700475 (OMIM: 137600,180500,180550,601542,60422 ( 317) 353 47.0 6.8e-05
NP_000316 (OMIM: 137600,180500,180550,601542,60422 ( 324) 353 47.0 6.9e-05
NP_852122 (OMIM: 122880,148820,193500,268220,60659 ( 479) 351 47.0 0.0001
NP_001120838 (OMIM: 122880,148820,193500,268220,60 ( 483) 351 47.0 0.0001
NP_852123 (OMIM: 122880,148820,193500,268220,60659 ( 484) 351 47.0 0.0001
NP_852124 (OMIM: 122880,148820,193500,268220,60659 ( 505) 351 47.0 0.00011
XP_016870292 (OMIM: 604675) PREDICTED: paired meso ( 193) 338 45.3 0.00013
NP_852126 (OMIM: 122880,148820,193500,268220,60659 ( 403) 345 46.3 0.00014
NP_001290437 (OMIM: 612019) intestine-specific hom ( 245) 339 45.5 0.00015
NP_852125 (OMIM: 122880,148820,193500,268220,60659 ( 407) 344 46.2 0.00015
XP_016883326 (OMIM: 122000,148300,605020,614195) P ( 280) 330 44.7 0.00029
NP_703149 (OMIM: 300154) homeobox protein ESX1 [Ho ( 406) 333 45.2 0.0003
NP_001243201 (OMIM: 122000,148300,605020,614195) v ( 301) 330 44.7 0.0003
NP_055403 (OMIM: 122000,148300,605020,614195) visu ( 365) 331 44.9 0.00032
NP_008833 (OMIM: 167420,202650) paired mesoderm ho ( 217) 324 44.0 0.00036
XP_006711451 (OMIM: 167420,202650) PREDICTED: pair ( 198) 321 43.7 0.00042
NP_000545 (OMIM: 120970,268000,602225,613829) cone ( 299) 324 44.1 0.00045
NP_073207 (OMIM: 167420,202650) paired mesoderm ho ( 245) 321 43.8 0.00048
NP_757379 (OMIM: 607410) diencephalon/mesencephalo ( 377) 323 44.2 0.00056
XP_016855778 (OMIM: 607410) PREDICTED: diencephalo ( 377) 323 44.2 0.00056
XP_011538970 (OMIM: 607410) PREDICTED: diencephalo ( 377) 323 44.2 0.00056
NP_001297090 (OMIM: 106210,120430,136520,148190,16 ( 286) 313 43.1 0.00091
NP_001297089 (OMIM: 106210,120430,136520,148190,16 ( 286) 313 43.1 0.00091
NP_671725 (OMIM: 607410) diencephalon/mesencephalo ( 382) 315 43.4 0.00096
NP_002644 (OMIM: 119800,186550,602149) pituitary h ( 314) 313 43.1 0.00096
NP_115485 (OMIM: 604529) homeobox protein orthoped ( 325) 311 42.9 0.0011
NP_001245394 (OMIM: 106210,120430,136520,148190,16 ( 422) 313 43.3 0.0012
NP_000271 (OMIM: 106210,120430,136520,148190,16555 ( 422) 313 43.3 0.0012
>>NP_006483 (OMIM: 136760,606014) homeobox protein arist (343 aa)
initn: 2468 init1: 2468 opt: 2468 Z-score: 1303.7 bits: 249.7 E(85289): 7e-66
Smith-Waterman score: 2468; 100.0% identity (100.0% similar) in 343 aa overlap (1-343:1-343)
10 20 30 40 50 60
pF1KB7 MDPEHCAPFRVGPAPGPYVASGDEPPGPQGTPAAAPHLHPAPPRGPRLTRFPACGPLEPY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MDPEHCAPFRVGPAPGPYVASGDEPPGPQGTPAAAPHLHPAPPRGPRLTRFPACGPLEPY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LPEPAKPPAKYLQDLGPGPALNGGHFYEGPAEAEEKTSKAASFPQLPLDCRGGPRDGPSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LPEPAKPPAKYLQDLGPGPALNGGHFYEGPAEAEEKTSKAASFPQLPLDCRGGPRDGPSN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 LQGSPGPCLASLHLPLSPGLPDSMELAKNKSKKRRNRTTFSTFQLEELEKVFQKTHYPDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LQGSPGPCLASLHLPLSPGLPDSMELAKNKSKKRRNRTTFSTFQLEELEKVFQKTHYPDV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 YAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKIQEGRNPFTAAYDISVLPRTDSHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 YAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKIQEGRNPFTAAYDISVLPRTDSHP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 QLQNSLWASPGSGSPGGPCLVSPEGIPSPCMSPYSHPHGSVAGFMGVPAPSAAHPGIYSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 QLQNSLWASPGSGSPGGPCLVSPEGIPSPCMSPYSHPHGSVAGFMGVPAPSAAHPGIYSI
250 260 270 280 290 300
310 320 330 340
pF1KB7 HGFPPTLGGHSFEPSSDGDYKSPSLVSLRVKPKEPPGLLNWTT
:::::::::::::::::::::::::::::::::::::::::::
NP_006 HGFPPTLGGHSFEPSSDGDYKSPSLVSLRVKPKEPPGLLNWTT
310 320 330 340
>>NP_068745 (OMIM: 605420,609597,613451,615529) homeobox (411 aa)
initn: 681 init1: 583 opt: 721 Z-score: 398.1 bits: 82.3 E(85289): 2e-15
Smith-Waterman score: 731; 41.1% identity (63.1% similar) in 360 aa overlap (8-343:76-411)
10 20 30
pF1KB7 MDPEHCAPFRVGP-APGPYVASGDEP--PGPQGTPAA
:.. : : : . .: : :: :
NP_068 TFLSAAAKAQGFGDAKSRARYGAGQQDLATPLESGAGARGSFNKFQPQPSTPQPQPPPQP
50 60 70 80 90 100
40 50 60 70 80
pF1KB7 APHLH---PAPPRGPRL-TRFPACGPLEPYLPEPAKPPAKYLQDLGPGPALNGGHF--YE
:. . : :: :.: . :: :: :. : : ..:: .
NP_068 QPQQQQPQPQPPAQPHLYLQRGAC----------KTPPDGSLK-LQEG---SSGHSAALQ
110 120 130 140 150
90 100 110 120 130 140
pF1KB7 GPAEAEEKTSKAASFPQLPLDCRGGPRDGPSNLQ----GSPGPC-LASLHLPLSPGLPDS
: :.:.. . :.:: : :. : :. : :: :: :: :: ..
NP_068 VPCYAKESS---LGEPELPPDSDTVGMDS-SYLSVKEAGVKGPQDRASSDLP-SP--LEK
160 170 180 190 200
150 160 170 180 190 200
pF1KB7 MELAKNKSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQN
. .::.:::::::::...::::::::::::::::::::::::.:::::::::::::::
NP_068 ADSESNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQN
210 220 230 240 250 260
210 220 230 240 250 260
pF1KB7 RRAKWRKRERYGKIQEGRNPFTAAYDISVLPRTDSHPQLQNSLW-ASPGSGSPGGPCLVS
::::::::::.:..:. :. :..::.. .: :.... :.:: : .. :..:: :.:
NP_068 RRAKWRKRERFGQMQQVRTHFSTAYELPLLTRAENYAQIQNPSWLGNNGAASPVPACVVP
270 280 290 300 310 320
270 280 290 300 310
pF1KB7 PEGIPSPCMSPYSHPHGS----VAGFMGVPAPSA----AHPG-IYSIHGFPPTLGGHSFE
. .:. ::::..:: :: :. :..: . .. .: : ... .. : :.: .:
NP_068 CDPVPA-CMSPHAHPPGSGASSVTDFLSVSGAGSHVGQTHMGSLFGAASLSPGLNG--YE
330 340 350 360 370 380
320 330 340
pF1KB7 PSSDGDYKSPSLVSLRVKPKEPPGLLNWTT
... : :. :...::.: :: . ..:.:
NP_068 LNGEPDRKTSSIAALRMKAKEHSAAISWAT
390 400 410
>>XP_011537084 (OMIM: 601527,613456) PREDICTED: ALX home (231 aa)
initn: 681 init1: 578 opt: 686 Z-score: 382.9 bits: 78.7 E(85289): 1.4e-14
Smith-Waterman score: 686; 52.9% identity (75.0% similar) in 208 aa overlap (140-341:24-229)
110 120 130 140 150 160
pF1KB7 CRGGPRDGPSNLQGSPGPCLASLHLPLSPGLPDSMELAKNKSKKRRNRTTFSTFQLEELE
: :. . ..:::::.::::...::::::
XP_011 MDNCNSLRMSPVKGMQEKGELDELGDKCDSNVSSSKKRRHRTTFTSLQLEELE
10 20 30 40 50
170 180 190 200 210 220
pF1KB7 KVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKIQEGRNPFTAAYD
::::::::::::.::::::::.::::::::::::::::::::::::.::.... :.:.::
XP_011 KVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQAKSHFAATYD
60 70 80 90 100 110
230 240 250 260 270 280
pF1KB7 ISVLPRTDSHPQLQNSLWASPGSG-SPGGPCLVSPEGIPSPCMSPYSHPHGSVAGFMGVP
:::::::::.::.::.:::. .:: : :.. :. : ::.:::: . ... :
XP_011 ISVLPRTDSYPQIQNNLWAGNASGGSVVTSCML-PRDTSS-CMTPYSHSPRTDSSYTGFS
120 130 140 150 160 170
290 300 310 320 330 340
pF1KB7 APSAAHPGIYSIHGFPPTL-----GGHSFEPSSDGDYKSPSLVSLRVKPKEPPGLLNWTT
. . . : .: .::.:: . . . .: :.. ::.: :: . ..:
XP_011 NHQNQFSHVPLNNFFTDSLLTGATNGHAFETKPEFERRSSSIAVLRMKAKEHTANISWAM
180 190 200 210 220 230
>>NP_008913 (OMIM: 601527,613456) ALX homeobox protein 1 (326 aa)
initn: 704 init1: 578 opt: 686 Z-score: 381.1 bits: 78.9 E(85289): 1.7e-14
Smith-Waterman score: 686; 52.9% identity (75.0% similar) in 208 aa overlap (140-341:119-324)
110 120 130 140 150 160
pF1KB7 CRGGPRDGPSNLQGSPGPCLASLHLPLSPGLPDSMELAKNKSKKRRNRTTFSTFQLEELE
: :. . ..:::::.::::...::::::
NP_008 HTELNRAMDNCNSLRMSPVKGMQEKGELDELGDKCDSNVSSSKKRRHRTTFTSLQLEELE
90 100 110 120 130 140
170 180 190 200 210 220
pF1KB7 KVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKIQEGRNPFTAAYD
::::::::::::.::::::::.::::::::::::::::::::::::.::.... :.:.::
NP_008 KVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQAKSHFAATYD
150 160 170 180 190 200
230 240 250 260 270 280
pF1KB7 ISVLPRTDSHPQLQNSLWASPGSG-SPGGPCLVSPEGIPSPCMSPYSHPHGSVAGFMGVP
:::::::::.::.::.:::. .:: : :.. :. : ::.:::: . ... :
NP_008 ISVLPRTDSYPQIQNNLWAGNASGGSVVTSCML-PRDTSS-CMTPYSHSPRTDSSYTGFS
210 220 230 240 250 260
290 300 310 320 330 340
pF1KB7 APSAAHPGIYSIHGFPPTL-----GGHSFEPSSDGDYKSPSLVSLRVKPKEPPGLLNWTT
. . . : .: .::.:: . . . .: :.. ::.: :: . ..:
NP_008 NHQNQFSHVPLNNFFTDSLLTGATNGHAFETKPEFERRSSSIAVLRMKAKEHTANISWAM
270 280 290 300 310 320
>>NP_038463 (OMIM: 601881,611038) retinal homeobox prote (346 aa)
initn: 383 init1: 328 opt: 396 Z-score: 230.7 bits: 51.1 E(85289): 4.1e-06
Smith-Waterman score: 448; 34.7% identity (55.3% similar) in 331 aa overlap (27-334:46-334)
10 20 30 40 50
pF1KB7 MDPEHCAPFRVGPAPGPYVASGDEPPGPQGTPAAAPHLHPAPPRGPRLTRFPACGP
: :: : . : : :: ::: :
NP_038 SLAGHLLRSPGGSTSRLHSIEAILGFTKDDGILGTFPAERGARGAKERDRRLGARPAC-P
20 30 40 50 60 70
60 70 80 90 100 110
pF1KB7 LEPYL-PEPAKPPAKYLQDLGPGPALNGGHFYEGPAEAEEKTSKAASFPQLPLDCRGGPR
: ::. ::: :.:: . ::.: : : :.
NP_038 KAPEEGSEPSPPPA-------PAPAPE----YEAPR------------PY----C---PK
80 90 100
120 130 140 150 160 170
pF1KB7 DGPSNLQGSPGPCLASLHLPLSPGLPDSM--ELAKNKSKKRRNRTTFSTFQLEELEKVFQ
. :.. . ::: ::..:. .. : . :.:.:::::::.:.::.:::..:.
NP_038 E-PGEARPSPG-------LPVGPATGEAKLSEEEQPKKKHRRNRTTFTTYQLHELERAFE
110 120 130 140 150
180 190 200 210 220
pF1KB7 KTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRERYG----KIQEG------RNP
:.::::::.::.:: ...: :.::::::::::::::..:. :.:.. :.:
NP_038 KSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEKLEVSSMKLQDSPLLSFSRSP
160 170 180 190 200 210
230 240 250 260 270
pF1KB7 FTAAYD-ISVLPRTDSHPQ---LQNSLWASPGSGSPGGPCLVSPEGIPSPCMS-PYSH-P
.:. . ... : . . : : : .: . :. : : :. : .: : :. :
NP_038 PSATLSPLGAGPGSGGGPAGGALPLESWLGPPLPGGGATALQSLPGFGPPAQSLPASYTP
220 230 240 250 260 270
280 290 300 310 320 330
pF1KB7 HGSVAGFMGVPAPSAAHPGIYSIHGFPPTLG-GHSFE---PSSDGDYKSPSLVSLRVKPK
:.. : : . ::. . ::. : .: : ...: .. :...::.: :
NP_038 PPPPPPFLNSP-PLG--PGLQPLAPPPPSYPCGPGFGDKFPLDEADPRNSSIAALRLKAK
280 290 300 310 320 330
340
pF1KB7 EPPGLLNWTT
:
NP_038 EHIQAIGKPWQAL
340
>>NP_620689 (OMIM: 300004,300215,300382,300419,308350,30 (562 aa)
initn: 400 init1: 366 opt: 394 Z-score: 227.1 bits: 51.2 E(85289): 6.5e-06
Smith-Waterman score: 423; 45.7% identity (66.5% similar) in 173 aa overlap (136-299:313-478)
110 120 130 140 150 160
pF1KB7 LPLDCRGGPRDGPSNLQGSPGPCLASLHLPLSPGLPDSMELAKNKSKKRRNRTTFSTFQL
:: : :: : . : :.:: ::::...::
NP_620 ATEGGELSPKEELLLHPEDAEGKDGEDSVCLSAG-SDSEE-GLLKRKQRRYRTTFTSYQL
290 300 310 320 330 340
170 180 190 200 210 220
pF1KB7 EELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKIQEGRN---
::::..:::::::::..::.::.: ::::::::::::::::::::::. : . .
NP_620 EELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREKAGAQTHPPGLPF
350 360 370 380 390 400
230 240 250 260 270
pF1KB7 --PFTAAYDIS----VLPRTDSHPQLQNSLWASPGSGSPGGPCLVSPEGIPSPCMSPYSH
:..:.. .: . : :: :... :. .... . : : : : : . : .
NP_620 PGPLSATHPLSPYLDASPFPPHHPALDSAWTAAAAAAAAAFPSLPPPPG--SASLPPSGA
410 420 430 440 450
280 290 300 310 320 330
pF1KB7 PHGSVAGFMGVPAPSAAHPGIYSIHGFPPTLGGHSFEPSSDGDYKSPSLVSLRVKPKEPP
: : .. :.: : ::.. :
NP_620 PLG-LSTFLG--AAVFRHPAFISPAFGRLFSTMAPLTSASTAAALLRQPTPAVEGAVASG
460 470 480 490 500 510
>>NP_003915 (OMIM: 209880,603851,613013) paired mesoderm (314 aa)
initn: 353 init1: 326 opt: 385 Z-score: 225.5 bits: 50.0 E(85289): 8.1e-06
Smith-Waterman score: 396; 39.1% identity (60.4% similar) in 230 aa overlap (98-318:37-240)
70 80 90 100 110 120
pF1KB7 PAKYLQDLGPGPALNGGHFYEGPAEAEEKTSKAASFPQLPLDCRGGPRDGPSNLQGSPGP
:.:..: :. : .: .: .::
NP_003 SYLNSSAYESCMAGMDTSSLASAYADFSSCSQASGFQYNPIRTTFGATSGCPSL--TPGS
10 20 30 40 50 60
130 140 150 160 170
pF1KB7 C-LASLH-LPLSP--GLPDSMELAKN----KSKKRRNRTTFSTFQLEELEKVFQKTHYPD
: :..:. :: ..: .. .. : :.:: ::::.. ::.:::.:: .:::::
NP_003 CSLGTLRDHQSSPYAAVPYKLFTDHGGLNEKRKQRRIRTTFTSAQLKELERVFAETHYPD
70 80 90 100 110 120
180 190 200 210 220 230
pF1KB7 VYAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKIQEGRNPFTAAYDISVLPRTDSH
.:.::.:::. :::::::::::::::::.::.:: . . :: . : ..::
NP_003 IYTREELALKIDLTEARVQVWFQNRRAKFRKQERAAAAAAA-----AAKNGSSGKKSDSS
130 140 150 160 170
240 250 260 270 280 290
pF1KB7 PQLQNSLWASPGSGSPGGPCLVSPEGIPSP-CMSPYSHPHGSVAGFMGVPAPSAAHPGIY
. ... : : ::: .:. :.: : :. .: : :.:..: ::
NP_003 RDDESKEAKSTDPDSTGGP---GPNPNPTPSC--------GANGGGGGGPSPAGA-PGAA
180 190 200 210 220
300 310 320 330 340
pF1KB7 SIHGFPPTLGGHSFEPSSDGDYKSPSLVSLRVKPKEPPGLLNWTT
. : :: . ::.. :
NP_003 G----P---GGPGGEPGKGGAAAAAAAAAAAAAAAAAAAAGGLAAAGGPGQGWAPGPGPI
230 240 250 260 270 280
>>NP_001128726 (OMIM: 167410,268220) paired box protein (505 aa)
initn: 370 init1: 319 opt: 385 Z-score: 223.0 bits: 50.2 E(85289): 1.1e-05
Smith-Waterman score: 385; 35.8% identity (65.8% similar) in 193 aa overlap (150-336:214-398)
120 130 140 150 160 170
pF1KB7 NLQGSPGPCLASLHLPLSPGLPDSMELAKNKSKKRRNRTTFSTFQLEELEKVFQKTHYPD
: :.::.::::.. :::::::.:..:::::
NP_001 AKHSIDGILGDKGNRLDEGSDVESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYPD
190 200 210 220 230 240
180 190 200 210 220 230
pF1KB7 VYAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKIQEGRNPFTAAYDISVLPRTDSH
.:.::.:: :: ::::::::::.::::.:::. ... . . ... . .: .
NP_001 IYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNHLLPGGFPPTGMPTLPPY
250 260 270 280 290 300
240 250 260 270 280 290
pF1KB7 PQLQNSLWASPGSGSPGGPCLVSPEGIPSPCMSPYSHPHGSVAGFMGVPAPSAAHPGIYS
:: .: . . .. :: . :. .: : . .:..:. .. :.:. . .:
NP_001 -QLPDSTYPTTTISQDGGSTVHRPQPLP-----PSTMHQGGLAAAAAAADTSSAYGARHS
310 320 330 340 350
300 310 320 330 340
pF1KB7 IHGFP-----PTLGGHSFEPSSDGDYKSPSLVSLRVKPKE-PPGLLNWTT
. .. :. .. ..: :.: ::...:. .:. ::
NP_001 FSSYSDSFMNPAAPSNHMNPVSNG--LSPQVMSILGNPSAVPPQPQADFSISPLHGGLDS
360 370 380 390 400 410
NP_001 ATSISASCSQRADSIKPGDSLPTSQAYCPPTYSTTGYSVDPVAGYQYGQYGQTAVDYLAK
420 430 440 450 460 470
>>NP_039236 (OMIM: 167410,268220) paired box protein Pax (518 aa)
initn: 370 init1: 319 opt: 385 Z-score: 222.9 bits: 50.3 E(85289): 1.1e-05
Smith-Waterman score: 385; 35.8% identity (65.8% similar) in 193 aa overlap (150-336:212-396)
120 130 140 150 160 170
pF1KB7 NLQGSPGPCLASLHLPLSPGLPDSMELAKNKSKKRRNRTTFSTFQLEELEKVFQKTHYPD
: :.::.::::.. :::::::.:..:::::
NP_039 AKHSIDGILGDKGNRLDEGSDVESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYPD
190 200 210 220 230 240
180 190 200 210 220 230
pF1KB7 VYAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKIQEGRNPFTAAYDISVLPRTDSH
.:.::.:: :: ::::::::::.::::.:::. ... . . ... . .: .
NP_039 IYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNHLLPGGFPPTGMPTLPPY
250 260 270 280 290 300
240 250 260 270 280 290
pF1KB7 PQLQNSLWASPGSGSPGGPCLVSPEGIPSPCMSPYSHPHGSVAGFMGVPAPSAAHPGIYS
:: .: . . .. :: . :. .: : . .:..:. .. :.:. . .:
NP_039 -QLPDSTYPTTTISQDGGSTVHRPQPLP-----PSTMHQGGLAAAAAAADTSSAYGARHS
310 320 330 340 350
300 310 320 330 340
pF1KB7 IHGFP-----PTLGGHSFEPSSDGDYKSPSLVSLRVKPKE-PPGLLNWTT
. .. :. .. ..: :.: ::...:. .:. ::
NP_039 FSSYSDSFMNPAAPSNHMNPVSNG--LSPQVMSILGNPSAVPPQPQADFSISPLHGGLDS
360 370 380 390 400 410
NP_039 ATSISASCSQRADSIKPGDSLPTSQAYCPPTYSTTGYSVDPVAGYQYGQYGQSECLVPWA
420 430 440 450 460 470
>>NP_002575 (OMIM: 167410,268220) paired box protein Pax (520 aa)
initn: 370 init1: 319 opt: 385 Z-score: 222.8 bits: 50.3 E(85289): 1.1e-05
Smith-Waterman score: 385; 35.8% identity (65.8% similar) in 193 aa overlap (150-336:214-398)
120 130 140 150 160 170
pF1KB7 NLQGSPGPCLASLHLPLSPGLPDSMELAKNKSKKRRNRTTFSTFQLEELEKVFQKTHYPD
: :.::.::::.. :::::::.:..:::::
NP_002 AKHSIDGILGDKGNRLDEGSDVESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYPD
190 200 210 220 230 240
180 190 200 210 220 230
pF1KB7 VYAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKIQEGRNPFTAAYDISVLPRTDSH
.:.::.:: :: ::::::::::.::::.:::. ... . . ... . .: .
NP_002 IYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNHLLPGGFPPTGMPTLPPY
250 260 270 280 290 300
240 250 260 270 280 290
pF1KB7 PQLQNSLWASPGSGSPGGPCLVSPEGIPSPCMSPYSHPHGSVAGFMGVPAPSAAHPGIYS
:: .: . . .. :: . :. .: : . .:..:. .. :.:. . .:
NP_002 -QLPDSTYPTTTISQDGGSTVHRPQPLP-----PSTMHQGGLAAAAAAADTSSAYGARHS
310 320 330 340 350
300 310 320 330 340
pF1KB7 IHGFP-----PTLGGHSFEPSSDGDYKSPSLVSLRVKPKE-PPGLLNWTT
. .. :. .. ..: :.: ::...:. .:. ::
NP_002 FSSYSDSFMNPAAPSNHMNPVSNG--LSPQVMSILGNPSAVPPQPQADFSISPLHGGLDS
360 370 380 390 400 410
NP_002 ATSISASCSQRADSIKPGDSLPTSQAYCPPTYSTTGYSVDPVAGYQYGQYGQSECLVPWA
420 430 440 450 460 470
343 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 16:57:08 2016 done: Mon Nov 7 16:57:09 2016
Total Scan time: 8.660 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]