FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7679, 342 aa
  1>>>pF1KB7679 342 - 342 aa - 342 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.8881+/-0.000391; mu= -10.7893+/- 0.024
 mean_var=544.0946+/-113.294, 0's: 0 Z-trim(126.3): 47  B-trim: 936 in 1/61
 Lambda= 0.054984
 statistics sampled from 52067 (52122) to 52067 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.857), E-opt: 0.2 (0.611), width:  16
 Scan time:  7.740

The best scores are:                                      opt bits E(85289)
NP_149056 (OMIM: 614805) doublesex- and mab-3-rela ( 342) 2474 210.0 6.1e-54
XP_011540239 (OMIM: 614804) PREDICTED: doublesex-  ( 542)  337 40.7  0.0089
NP_115486 (OMIM: 614804) doublesex- and mab-3-rela ( 542)  337 40.7  0.0089


>>NP_149056 (OMIM: 614805) doublesex- and mab-3-related   (342 aa)
 initn: 2474 init1: 2474 opt: 2474  Z-score: 1089.4  bits: 210.0 E(85289): 6.1e-54
Smith-Waterman score: 2474; 100.0% identity (100.0% similar) in 342 aa overlap (1-342:1-342)

               10        20        30        40        50        60
pF1KB7 MADKMVRTPKCSRCRNHGFLVPVKGHAGKCRWKQCLCEKCYLISERQKIMAAQKVLKTQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_149 MADKMVRTPKCSRCRNHGFLVPVKGHAGKCRWKQCLCEKCYLISERQKIMAAQKVLKTQA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 AEEEQEAALCAQGPKQASGAAAAAPAPVPVPAASLRPLSPGTPSGDADPGPEGRAAACFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_149 AEEEQEAALCAQGPKQASGAAAAAPAPVPVPAASLRPLSPGTPSGDADPGPEGRAAACFF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 EQPPRGRNPGPRALQPVLGGRSHVEPSERAAVAMPSLAGPPFGAEAAGSGYPGPLDLRRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_149 EQPPRGRNPGPRALQPVLGGRSHVEPSERAAVAMPSLAGPPFGAEAAGSGYPGPLDLRRP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 MRTVPGPLFTDFVRPLNINPDRALGPEYPGGSSMHPYCPFPLGYLDAPPGVPLQQGFRHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_149 MRTVPGPLFTDFVRPLNINPDRALGPEYPGGSSMHPYCPFPLGYLDAPPGVPLQQGFRHV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 SRSQYQGGGLVSEPGGDFQPSYYLPPPPPPLPPLPPLPPQPQFLPPGYLSALHFLPPPPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_149 SRSQYQGGGLVSEPGGDFQPSYYLPPPPPPLPPLPPLPPQPQFLPPGYLSALHFLPPPPP
              250       260       270       280       290       300

              310       320       330       340  
pF1KB7 PPPPSSFSLTVLFDTDKENTDDQDAEVLSGEPSQPSSQEQSD
       ::::::::::::::::::::::::::::::::::::::::::
NP_149 PPPPSSFSLTVLFDTDKENTDDQDAEVLSGEPSQPSSQEQSD
              310       320       330       340  

>>XP_011540239 (OMIM: 614804) PREDICTED: doublesex- and   (542 aa)
 initn: 362 init1: 321 opt: 337  Z-score: 170.9  bits: 40.7 E(85289): 0.0089
Smith-Waterman score: 345; 32.0% identity (49.0% similar) in 259 aa overlap (2-239:61-313)

                                            10        20        30 
pF1KB7                              MADKMVRTPKCSRCRNHGFLVPVKGHAGKCR
                                     :.:. :::::.:::::: .  .:::   ::
XP_011 SVAAAAAAAASLPVSVAGGLLRGPPLLLRAAEKYPRTPKCARCRNHGVVSALKGHKRYCR
               40        50        60        70        80        90

              40        50        60        70        80           
pF1KB7 WKQCLCEKCYLISERQKIMAAQKVLKTQAAEEEQEAALCAQGPKQASGAAAAAPAPV--P
       ::.::: :: ::.:::..:::: .:. : :.::.::         : : : ::   .  :
XP_011 WKDCLCAKCTLIAERQRVMAAQVALRRQQAQEENEARELQLLYGTAEGLALAAANGIIPP
              100       110       120       130       140       150

      90           100       110               120              130
pF1KB7 VPA----ASLRPLSPGTPSGDADPGPEGRAAACF--------FEQPPR-----GR--NPG
        ::    .:.   . : :.. :  :  : ::.          :.  :.     ::  .: 
XP_011 RPAYEVFGSVCAADGGGPGAGAPAGTGGGAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPL
              160       170       180       190       200       210

              140       150       160       170       180       190
pF1KB7 PRALQPVLGGRSHVEPSERAAVAMPSLAGPPFGAEAAGSGYPGPLDLRRPMRTVPGPLFT
       :  ..:.    .   :.  .  . :. .:   :   . :: :     ..   . ::    
XP_011 PPPVKPLSPDGADSGPGTSSPEVRPG-SGSENGDGESFSGSPLARASKEAGGSCPGS---
              220       230        240       250       260         

              200       210       220       230       240       250
pF1KB7 DFVRPLNINPDRALGPEYPGGSSMHPYCPFPLGYLDAPPGVPLQQGFRHVSRSQYQGGGL
         . : . . . . :   : ::          :     ::.   .: :.           
XP_011 --AGPGGGGEEDSPGSASPLGSESGSEADKEEGEAAPAPGLGGGSGPRQRTPLDILTRVF
          270       280       290       300       310       320    

              260       270       280       290       300       310
pF1KB7 VSEPGGDFQPSYYLPPPPPPLPPLPPLPPQPQFLPPGYLSALHFLPPPPPPPPPSSFSLT
                                                                   
XP_011 PGHRRGVLELVLQGCGGDVVQAIEQVLNHHRGGLAAGLGPAAPPDKAAVGAAAAADDAWP
          330       340       350       360       370       380    

>>NP_115486 (OMIM: 614804) doublesex- and mab-3-related   (542 aa)
 initn: 362 init1: 321 opt: 337  Z-score: 170.9  bits: 40.7 E(85289): 0.0089
Smith-Waterman score: 345; 32.0% identity (49.0% similar) in 259 aa overlap (2-239:61-313)

                                            10        20        30 
pF1KB7                              MADKMVRTPKCSRCRNHGFLVPVKGHAGKCR
                                     :.:. :::::.:::::: .  .:::   ::
NP_115 SVAAAAAAAASLPVSVAGGLLRGPPLLLRAAEKYPRTPKCARCRNHGVVSALKGHKRYCR
               40        50        60        70        80        90

              40        50        60        70        80           
pF1KB7 WKQCLCEKCYLISERQKIMAAQKVLKTQAAEEEQEAALCAQGPKQASGAAAAAPAPV--P
       ::.::: :: ::.:::..:::: .:. : :.::.::         : : : ::   .  :
NP_115 WKDCLCAKCTLIAERQRVMAAQVALRRQQAQEENEARELQLLYGTAEGLALAAANGIIPP
              100       110       120       130       140       150

      90           100       110               120              130
pF1KB7 VPA----ASLRPLSPGTPSGDADPGPEGRAAACF--------FEQPPR-----GR--NPG
        ::    .:.   . : :.. :  :  : ::.          :.  :.     ::  .: 
NP_115 RPAYEVFGSVCAADGGGPGAGAPAGTGGGAAGAGGSEAKLQKFDLFPKTLLQAGRPGSPL
              160       170       180       190       200       210

              140       150       160       170       180       190
pF1KB7 PRALQPVLGGRSHVEPSERAAVAMPSLAGPPFGAEAAGSGYPGPLDLRRPMRTVPGPLFT
       :  ..:.    .   :.  .  . :. .:   :   . :: :     ..   . ::    
NP_115 PPPVKPLSPDGADSGPGTSSPEVRPG-SGSENGDGESFSGSPLARASKEAGGSCPGS---
              220       230        240       250       260         

              200       210       220       230       240       250
pF1KB7 DFVRPLNINPDRALGPEYPGGSSMHPYCPFPLGYLDAPPGVPLQQGFRHVSRSQYQGGGL
         . : . . . . :   : ::          :     ::.   .: :.           
NP_115 --AGPGGGGEEDSPGSASPLGSESGSEADKEEGEAAPAPGLGGGSGPRQRTPLDILTRVF
          270       280       290       300       310       320    

              260       270       280       290       300       310
pF1KB7 VSEPGGDFQPSYYLPPPPPPLPPLPPLPPQPQFLPPGYLSALHFLPPPPPPPPPSSFSLT
                                                                   
NP_115 PGHRRGVLELVLQGCGGDVVQAIEQVLNHHRGGLAAGLGPAAPPDKAAVGAAAAADDAWP
          330       340       350       360       370       380    




342 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 05:39:44 2016 done: Sun Nov  6 05:39:45 2016
 Total Scan time:  7.740 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]