FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7679, 342 aa
  1>>>pF1KB7679 342 - 342 aa - 342 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.0389+/-0.00097; mu= -5.9082+/- 0.059
 mean_var=470.5199+/-96.258, 0's: 0 Z-trim(118.7): 36  B-trim: 196 in 1/52
 Lambda= 0.059127
 statistics sampled from 19651 (19687) to 19651 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.855), E-opt: 0.2 (0.605), width:  16
 Scan time:  3.510

The best scores are:                                      opt bits E(32554)
CCDS581.1 DMRTB1 gene_id:63948|Hs108|chr1          ( 342) 2474 224.4   1e-58


>>CCDS581.1 DMRTB1 gene_id:63948|Hs108|chr1               (342 aa)
 initn: 2474 init1: 2474 opt: 2474  Z-score: 1167.5  bits: 224.4 E(32554): 1e-58
Smith-Waterman score: 2474; 100.0% identity (100.0% similar) in 342 aa overlap (1-342:1-342)

               10        20        30        40        50        60
pF1KB7 MADKMVRTPKCSRCRNHGFLVPVKGHAGKCRWKQCLCEKCYLISERQKIMAAQKVLKTQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MADKMVRTPKCSRCRNHGFLVPVKGHAGKCRWKQCLCEKCYLISERQKIMAAQKVLKTQA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 AEEEQEAALCAQGPKQASGAAAAAPAPVPVPAASLRPLSPGTPSGDADPGPEGRAAACFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 AEEEQEAALCAQGPKQASGAAAAAPAPVPVPAASLRPLSPGTPSGDADPGPEGRAAACFF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 EQPPRGRNPGPRALQPVLGGRSHVEPSERAAVAMPSLAGPPFGAEAAGSGYPGPLDLRRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 EQPPRGRNPGPRALQPVLGGRSHVEPSERAAVAMPSLAGPPFGAEAAGSGYPGPLDLRRP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 MRTVPGPLFTDFVRPLNINPDRALGPEYPGGSSMHPYCPFPLGYLDAPPGVPLQQGFRHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MRTVPGPLFTDFVRPLNINPDRALGPEYPGGSSMHPYCPFPLGYLDAPPGVPLQQGFRHV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 SRSQYQGGGLVSEPGGDFQPSYYLPPPPPPLPPLPPLPPQPQFLPPGYLSALHFLPPPPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 SRSQYQGGGLVSEPGGDFQPSYYLPPPPPPLPPLPPLPPQPQFLPPGYLSALHFLPPPPP
              250       260       270       280       290       300

              310       320       330       340  
pF1KB7 PPPPSSFSLTVLFDTDKENTDDQDAEVLSGEPSQPSSQEQSD
       ::::::::::::::::::::::::::::::::::::::::::
CCDS58 PPPPSSFSLTVLFDTDKENTDDQDAEVLSGEPSQPSSQEQSD
              310       320       330       340  




342 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 05:39:43 2016 done: Sun Nov  6 05:39:43 2016
 Total Scan time:  3.510 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]