Result of FASTA (omim) for
pFN21AB7673
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7673, 340 aa
1>>>pF1KB7673 340 - 340 aa - 340 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.4669+/-0.00033; mu= 1.0200+/- 0.021
mean_var=303.0264+/-61.702, 0's: 0 Z-trim(125.3): 11 B-trim: 913 in 1/56
Lambda= 0.073677
statistics sampled from 48794 (48829) to 48794 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.837), E-opt: 0.2 (0.573), width: 16
Scan time: 9.170
The best scores are: opt bits E(85289)
XP_016874866 (OMIM: 601936) PREDICTED: PRKC apopto ( 340) 2212 247.6 2.9e-65
XP_006719498 (OMIM: 601936) PREDICTED: PRKC apopto ( 340) 2212 247.6 2.9e-65
NP_002574 (OMIM: 601936) PRKC apoptosis WT1 regula ( 340) 2212 247.6 2.9e-65
XP_006719499 (OMIM: 601936) PREDICTED: PRKC apopto ( 248) 1518 173.7 3.7e-43
XP_016874867 (OMIM: 601936) PREDICTED: PRKC apopto ( 216) 1441 165.5 9.8e-41
XP_016874868 (OMIM: 601936) PREDICTED: PRKC apopto ( 173) 1156 135.1 1.1e-31
>>XP_016874866 (OMIM: 601936) PREDICTED: PRKC apoptosis (340 aa)
initn: 2212 init1: 2212 opt: 2212 Z-score: 1292.8 bits: 247.6 E(85289): 2.9e-65
Smith-Waterman score: 2212; 99.4% identity (99.7% similar) in 340 aa overlap (1-340:1-340)
10 20 30 40 50 60
pF1KB7 MATGGYRTSSGLGGSTTDFLEEWKAKREKMRAKQNPPGPAPPGGGSSDAAGKPPAGALGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MATGGYRTSSGLGGSTTDFLEEWKAKREKMRAKQNPPGPAPPGGGSSDAAGKPPAGALGT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 PAAAAANELNNNLPGGARAAPAVPGPGGVNCAVGSAMLTRAAPGPRRSEDEPPAASASAA
::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::
XP_016 PAAAAANELNNNLPGGAPAAPAVPGPGGVNCAVGSAMLTRAAPGPRRSEDEPPAASASAA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 PPPQRDEEEPDGVPEKGKSSGPSARKGKGQIEKRKLREKRRSTGVVNIPAAECLDEYEDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PPPQRDEEEPDGVPEKGKSSGPSARKGKGQIEKRKLREKRRSTGVVNIPAAECLDEYEDD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 EAGQKERKREDAITQQNTMQNEAVNLLDPGSSYLLQEPPRTVSGRYKSTTSVSEEDVSSR
::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::
XP_016 EAGQKERKREDAITQQNTIQNEAVNLLDPGSSYLLQEPPRTVSGRYKSTTSVSEEDVSSR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 YSRTDRSGFPRYNRDANVSGTLVSSSTLEKKIEDLEKEVVRERQENLRLVRLMQDKEEMI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YSRTDRSGFPRYNRDANVSGTLVSSSTLEKKIEDLEKEVVRERQENLRLVRLMQDKEEMI
250 260 270 280 290 300
310 320 330 340
pF1KB7 GKLKEEIDLLNRDLDDIEDENEQLKQENKTLLKVVGQLTR
::::::::::::::::::::::::::::::::::::::::
XP_016 GKLKEEIDLLNRDLDDIEDENEQLKQENKTLLKVVGQLTR
310 320 330 340
>>XP_006719498 (OMIM: 601936) PREDICTED: PRKC apoptosis (340 aa)
initn: 2212 init1: 2212 opt: 2212 Z-score: 1292.8 bits: 247.6 E(85289): 2.9e-65
Smith-Waterman score: 2212; 99.4% identity (99.7% similar) in 340 aa overlap (1-340:1-340)
10 20 30 40 50 60
pF1KB7 MATGGYRTSSGLGGSTTDFLEEWKAKREKMRAKQNPPGPAPPGGGSSDAAGKPPAGALGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MATGGYRTSSGLGGSTTDFLEEWKAKREKMRAKQNPPGPAPPGGGSSDAAGKPPAGALGT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 PAAAAANELNNNLPGGARAAPAVPGPGGVNCAVGSAMLTRAAPGPRRSEDEPPAASASAA
::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::
XP_006 PAAAAANELNNNLPGGAPAAPAVPGPGGVNCAVGSAMLTRAAPGPRRSEDEPPAASASAA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 PPPQRDEEEPDGVPEKGKSSGPSARKGKGQIEKRKLREKRRSTGVVNIPAAECLDEYEDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PPPQRDEEEPDGVPEKGKSSGPSARKGKGQIEKRKLREKRRSTGVVNIPAAECLDEYEDD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 EAGQKERKREDAITQQNTMQNEAVNLLDPGSSYLLQEPPRTVSGRYKSTTSVSEEDVSSR
::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::
XP_006 EAGQKERKREDAITQQNTIQNEAVNLLDPGSSYLLQEPPRTVSGRYKSTTSVSEEDVSSR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 YSRTDRSGFPRYNRDANVSGTLVSSSTLEKKIEDLEKEVVRERQENLRLVRLMQDKEEMI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 YSRTDRSGFPRYNRDANVSGTLVSSSTLEKKIEDLEKEVVRERQENLRLVRLMQDKEEMI
250 260 270 280 290 300
310 320 330 340
pF1KB7 GKLKEEIDLLNRDLDDIEDENEQLKQENKTLLKVVGQLTR
::::::::::::::::::::::::::::::::::::::::
XP_006 GKLKEEIDLLNRDLDDIEDENEQLKQENKTLLKVVGQLTR
310 320 330 340
>>NP_002574 (OMIM: 601936) PRKC apoptosis WT1 regulator (340 aa)
initn: 2212 init1: 2212 opt: 2212 Z-score: 1292.8 bits: 247.6 E(85289): 2.9e-65
Smith-Waterman score: 2212; 99.4% identity (99.7% similar) in 340 aa overlap (1-340:1-340)
10 20 30 40 50 60
pF1KB7 MATGGYRTSSGLGGSTTDFLEEWKAKREKMRAKQNPPGPAPPGGGSSDAAGKPPAGALGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MATGGYRTSSGLGGSTTDFLEEWKAKREKMRAKQNPPGPAPPGGGSSDAAGKPPAGALGT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 PAAAAANELNNNLPGGARAAPAVPGPGGVNCAVGSAMLTRAAPGPRRSEDEPPAASASAA
::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::
NP_002 PAAAAANELNNNLPGGAPAAPAVPGPGGVNCAVGSAMLTRAAPGPRRSEDEPPAASASAA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 PPPQRDEEEPDGVPEKGKSSGPSARKGKGQIEKRKLREKRRSTGVVNIPAAECLDEYEDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 PPPQRDEEEPDGVPEKGKSSGPSARKGKGQIEKRKLREKRRSTGVVNIPAAECLDEYEDD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 EAGQKERKREDAITQQNTMQNEAVNLLDPGSSYLLQEPPRTVSGRYKSTTSVSEEDVSSR
::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::
NP_002 EAGQKERKREDAITQQNTIQNEAVNLLDPGSSYLLQEPPRTVSGRYKSTTSVSEEDVSSR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 YSRTDRSGFPRYNRDANVSGTLVSSSTLEKKIEDLEKEVVRERQENLRLVRLMQDKEEMI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 YSRTDRSGFPRYNRDANVSGTLVSSSTLEKKIEDLEKEVVRERQENLRLVRLMQDKEEMI
250 260 270 280 290 300
310 320 330 340
pF1KB7 GKLKEEIDLLNRDLDDIEDENEQLKQENKTLLKVVGQLTR
::::::::::::::::::::::::::::::::::::::::
NP_002 GKLKEEIDLLNRDLDDIEDENEQLKQENKTLLKVVGQLTR
310 320 330 340
>>XP_006719499 (OMIM: 601936) PREDICTED: PRKC apoptosis (248 aa)
initn: 1518 init1: 1518 opt: 1518 Z-score: 895.8 bits: 173.7 E(85289): 3.7e-43
Smith-Waterman score: 1518; 99.1% identity (99.6% similar) in 227 aa overlap (1-227:1-227)
10 20 30 40 50 60
pF1KB7 MATGGYRTSSGLGGSTTDFLEEWKAKREKMRAKQNPPGPAPPGGGSSDAAGKPPAGALGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MATGGYRTSSGLGGSTTDFLEEWKAKREKMRAKQNPPGPAPPGGGSSDAAGKPPAGALGT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 PAAAAANELNNNLPGGARAAPAVPGPGGVNCAVGSAMLTRAAPGPRRSEDEPPAASASAA
::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::
XP_006 PAAAAANELNNNLPGGAPAAPAVPGPGGVNCAVGSAMLTRAAPGPRRSEDEPPAASASAA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 PPPQRDEEEPDGVPEKGKSSGPSARKGKGQIEKRKLREKRRSTGVVNIPAAECLDEYEDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PPPQRDEEEPDGVPEKGKSSGPSARKGKGQIEKRKLREKRRSTGVVNIPAAECLDEYEDD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 EAGQKERKREDAITQQNTMQNEAVNLLDPGSSYLLQEPPRTVSGRYKSTTSVSEEDVSSR
::::::::::::::::::.::::::::::::::::::::::::::::
XP_006 EAGQKERKREDAITQQNTIQNEAVNLLDPGSSYLLQEPPRTVSGRYKRKRDKPYTEQGAV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 YSRTDRSGFPRYNRDANVSGTLVSSSTLEKKIEDLEKEVVRERQENLRLVRLMQDKEEMI
XP_006 TRSGSVGG
>>XP_016874867 (OMIM: 601936) PREDICTED: PRKC apoptosis (216 aa)
initn: 1441 init1: 1441 opt: 1441 Z-score: 852.3 bits: 165.5 E(85289): 9.8e-41
Smith-Waterman score: 1441; 99.1% identity (99.5% similar) in 216 aa overlap (1-216:1-216)
10 20 30 40 50 60
pF1KB7 MATGGYRTSSGLGGSTTDFLEEWKAKREKMRAKQNPPGPAPPGGGSSDAAGKPPAGALGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MATGGYRTSSGLGGSTTDFLEEWKAKREKMRAKQNPPGPAPPGGGSSDAAGKPPAGALGT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 PAAAAANELNNNLPGGARAAPAVPGPGGVNCAVGSAMLTRAAPGPRRSEDEPPAASASAA
::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::
XP_016 PAAAAANELNNNLPGGAPAAPAVPGPGGVNCAVGSAMLTRAAPGPRRSEDEPPAASASAA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 PPPQRDEEEPDGVPEKGKSSGPSARKGKGQIEKRKLREKRRSTGVVNIPAAECLDEYEDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PPPQRDEEEPDGVPEKGKSSGPSARKGKGQIEKRKLREKRRSTGVVNIPAAECLDEYEDD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 EAGQKERKREDAITQQNTMQNEAVNLLDPGSSYLLQEPPRTVSGRYKSTTSVSEEDVSSR
::::::::::::::::::.:::::::::::::::::
XP_016 EAGQKERKREDAITQQNTIQNEAVNLLDPGSSYLLQ
190 200 210
250 260 270 280 290 300
pF1KB7 YSRTDRSGFPRYNRDANVSGTLVSSSTLEKKIEDLEKEVVRERQENLRLVRLMQDKEEMI
>>XP_016874868 (OMIM: 601936) PREDICTED: PRKC apoptosis (173 aa)
initn: 1156 init1: 1156 opt: 1156 Z-score: 689.8 bits: 135.1 E(85289): 1.1e-31
Smith-Waterman score: 1156; 99.4% identity (99.4% similar) in 172 aa overlap (1-172:1-172)
10 20 30 40 50 60
pF1KB7 MATGGYRTSSGLGGSTTDFLEEWKAKREKMRAKQNPPGPAPPGGGSSDAAGKPPAGALGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MATGGYRTSSGLGGSTTDFLEEWKAKREKMRAKQNPPGPAPPGGGSSDAAGKPPAGALGT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 PAAAAANELNNNLPGGARAAPAVPGPGGVNCAVGSAMLTRAAPGPRRSEDEPPAASASAA
::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::
XP_016 PAAAAANELNNNLPGGAPAAPAVPGPGGVNCAVGSAMLTRAAPGPRRSEDEPPAASASAA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 PPPQRDEEEPDGVPEKGKSSGPSARKGKGQIEKRKLREKRRSTGVVNIPAAECLDEYEDD
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PPPQRDEEEPDGVPEKGKSSGPSARKGKGQIEKRKLREKRRSTGVVNIPAAER
130 140 150 160 170
190 200 210 220 230 240
pF1KB7 EAGQKERKREDAITQQNTMQNEAVNLLDPGSSYLLQEPPRTVSGRYKSTTSVSEEDVSSR
340 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 12:28:26 2016 done: Sun Nov 6 12:28:27 2016
Total Scan time: 9.170 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]