FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7642, 387 aa
  1>>>pF1KB7642 387 - 387 aa - 387 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.6453+/-0.000993; mu= -8.4109+/- 0.061
 mean_var=442.7729+/-88.611, 0's: 0 Z-trim(117.3): 119  B-trim: 0 in 0/55
 Lambda= 0.060951
 statistics sampled from 17935 (18055) to 17935 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.82), E-opt: 0.2 (0.555), width:  16
 Scan time:  3.370

The best scores are:                                      opt bits E(32554)
CCDS730.1 BARHL2 gene_id:343472|Hs108|chr1         ( 387) 2639 245.6 5.8e-65
CCDS6950.1 BARHL1 gene_id:56751|Hs108|chr9         ( 327) 1003 101.6   1e-21


>>CCDS730.1 BARHL2 gene_id:343472|Hs108|chr1              (387 aa)
 initn: 2639 init1: 2639 opt: 2639  Z-score: 1279.8  bits: 245.6 E(32554): 5.8e-65
Smith-Waterman score: 2639; 100.0% identity (100.0% similar) in 387 aa overlap (1-387:1-387)

               10        20        30        40        50        60
pF1KB7 MTMEGASGSSFGIDTILSSASSGSPGMMNGDFRPLGEARTADFRSQATPSPCSEIDTVGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MTMEGASGSSFGIDTILSSASSGSPGMMNGDFRPLGEARTADFRSQATPSPCSEIDTVGT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 APSSPISVTMEPPEPHLVADATQHHHHLHHSQQPPPPAAAPTQSLQPLPQQQQPLPPQQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 APSSPISVTMEPPEPHLVADATQHHHHLHHSQQPPPPAAAPTQSLQPLPQQQQPLPPQQP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 PPPPPQQLGSAASAPRTSTSSFLIKDILGDSKPLAACAPYSTSVSSPHHTPKQESNAVHE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 PPPPPQQLGSAASAPRTSTSSFLIKDILGDSKPLAACAPYSTSVSSPHHTPKQESNAVHE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 SFRPKLEQEDSKTKLDKREDSQSDIKCHGTKEEGDREITSSRESPPVRAKKPRKARTAFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 SFRPKLEQEDSKTKLDKREDSQSDIKCHGTKEEGDREITSSRESPPVRAKKPRKARTAFS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 DHQLNQLERSFERQKYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 DHQLNQLERSFERQKYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELLAE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 AGNYSALQRMFPSPYFYHPSLLGSMDSTTAAAAAAAMYSSMYRTPPAPHPQLQRPLVPRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 AGNYSALQRMFPSPYFYHPSLLGSMDSTTAAAAAAAMYSSMYRTPPAPHPQLQRPLVPRV
              310       320       330       340       350       360

              370       380       
pF1KB7 LIHGLGPGGQPALNPLSSPIPGTPHPR
       :::::::::::::::::::::::::::
CCDS73 LIHGLGPGGQPALNPLSSPIPGTPHPR
              370       380       

>>CCDS6950.1 BARHL1 gene_id:56751|Hs108|chr9              (327 aa)
 initn: 1075 init1: 723 opt: 1003  Z-score: 503.2  bits: 101.6 E(32554): 1e-21
Smith-Waterman score: 1075; 53.0% identity (68.4% similar) in 389 aa overlap (3-387:1-327)

               10        20        30        40        50        60
pF1KB7 MTMEGASGSSFGIDTILSSASSGSPGMMNGDFRPLGEARTADFRSQATPSPCSEIDTVGT
         :::..:  ::::.:::   .:::.. .::  ::     .: ::    :: :: ..  .
CCDS69   MEGSNG--FGIDSILSH-RAGSPALPKGD--PL----LGDCRSPLELSPRSESSSDCS
                   10         20              30        40         

               70        80        90       100       110       120
pF1KB7 APSSPISVTMEPPEPHLVADATQHHHHLHHSQQPPPPAAAPTQSLQPLPQQQQPLPPQQP
       .:.::    .:   :.                  :  :..:      : .. ::      
CCDS69 SPASPGRDCLETGTPR------------------PGGASGPG-----LDSHLQP------
      50        60                          70             80      

              130       140       150       160         170        
pF1KB7 PPPPPQQLGSAASAPRTSTSSFLIKDILGDSKPLAACAPYSTS--VSSPHHTPKQESNAV
             :: :: .  :: ::::::.:::.: ::::::::::.:   ..:.   .  ..:.
CCDS69 -----GQL-SAPAQSRTVTSSFLIRDILADCKPLAACAPYSSSGQPAAPEPGGRLAAKAA
                     90       100       110       120       130    

      180       190       200       210       220       230        
pF1KB7 HESFRPKLEQEDSKTKLDKREDSQSDIKCHGTKEEGDREITSSRESPPVRAKKPRKARTA
        :.:: ::..  :...      :.:. :   .::::::::.:::.::::: :::::::::
CCDS69 -EDFRDKLDKSGSNAS------SDSEYK---VKEEGDREISSSRDSPPVRLKKPRKARTA
           140             150          160       170       180    

      240       250       260       270       280       290        
pF1KB7 FSDHQLNQLERSFERQKYLSVQDRMDLAAALNLTDTQVKTWYQNRRTKWKRQTAVGLELL
       :.:::: ::::::::::::::::::.:::.::::::::::::::::::::::::::::::
CCDS69 FTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAVGLELL
          190       200       210       220       230       240    

      300       310       320       330       340       350        
pF1KB7 AEAGNYSALQRMFPSPYFYHPSLLGSMDSTTAAAAAAAMYSSMYRTPPAPHPQLQRPLVP
       :::::::::::::::::::  ::....:       .::.:  .:: : :: : :::::::
CCDS69 AEAGNYSALQRMFPSPYFYPQSLVSNLD------PGAALY--LYRGPSAPPPALQRPLVP
          250       260       270               280       290      

      360       370         380       
pF1KB7 RVLIHGLGPGGQPA--LNPLSSPIPGTPHPR
       :.:::::  ...:   : ::.. .: . .::
CCDS69 RILIHGLQGASEPPPPLPPLAGVLPRAAQPR
        300       310       320       




387 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 03:10:57 2016 done: Sun Nov  6 03:10:57 2016
 Total Scan time:  3.370 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]