FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7634, 375 aa
  1>>>pF1KB7634 375 - 375 aa - 375 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.2542+/-0.000758; mu= 4.4673+/- 0.046
 mean_var=154.9003+/-31.817, 0's: 0 Z-trim(114.0): 12  B-trim: 254 in 2/53
 Lambda= 0.103050
 statistics sampled from 14568 (14580) to 14568 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.773), E-opt: 0.2 (0.448), width:  16
 Scan time:  3.230

The best scores are:                                      opt bits E(32554)
CCDS9724.1 TBPL2 gene_id:387332|Hs108|chr14        ( 375) 2476 379.3 3.1e-105
CCDS5315.1 TBP gene_id:6908|Hs108|chr6             ( 339) 1234 194.6 1.1e-49
CCDS55077.1 TBP gene_id:6908|Hs108|chr6            ( 319) 1217 192.1   6e-49
CCDS5168.1 TBPL1 gene_id:9519|Hs108|chr6           ( 186)  451 78.1 7.2e-15


>>CCDS9724.1 TBPL2 gene_id:387332|Hs108|chr14             (375 aa)
 initn: 2476 init1: 2476 opt: 2476  Z-score: 2002.8  bits: 379.3 E(32554): 3.1e-105
Smith-Waterman score: 2476; 99.7% identity (99.7% similar) in 375 aa overlap (1-375:1-375)

               10        20        30        40        50        60
pF1KB7 MASAPWPERVPRLLAPRLPSYPPPPPTVGLPSMEQEETYLELYLDQCAAQDGLAPPRSPL
       :::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::
CCDS97 MASAPWPERVPRLLAPRLPSYPPPPPTVGLRSMEQEETYLELYLDQCAAQDGLAPPRSPL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 FSPVVPYDMYILNASNPDTAFNSNPEVKETSGDFSSVDLSFLPDEVTQENKDQPVISKHE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 FSPVVPYDMYILNASNPDTAFNSNPEVKETSGDFSSVDLSFLPDEVTQENKDQPVISKHE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 TEENSESQSPQSRLPSPSEQDVGLGLNSSSLSNSHSQLHPGDTDSVQPSPEKPNSDSLSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 TEENSESQSPQSRLPSPSEQDVGLGLNSSSLSNSHSQLHPGDTDSVQPSPEKPNSDSLSL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 ASITPMTPMTPISECCGIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 ASITPMTPMTPISECCGIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 IREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 IREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 VRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 VRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYE
              310       320       330       340       350       360

              370     
pF1KB7 AFENIYPILKGFKKA
       :::::::::::::::
CCDS97 AFENIYPILKGFKKA
              370     

>>CCDS5315.1 TBP gene_id:6908|Hs108|chr6                  (339 aa)
 initn: 1429 init1: 1150 opt: 1234  Z-score: 1005.5  bits: 194.6 E(32554): 1.1e-49
Smith-Waterman score: 1234; 59.4% identity (77.5% similar) in 342 aa overlap (33-374:1-337)

             10        20        30        40        50        60  
pF1KB7 SAPWPERVPRLLAPRLPSYPPPPPTVGLPSMEQEETYLELYLDQCAAQDGLAPPRSPLFS
                                     :.:... :  : .  :. .:   :  :.::
CCDS53                               MDQNNS-LPPYAQGLASPQGAMTPGIPIFS
                                              10        20         

             70        80        90       100       110       120  
pF1KB7 PVVPYDMYILNASNPDTAFNSNPEVKETSGDFSSVDLSFLPDEVTQENKDQPVISKHETE
       :..::   .    .:.   :.:        . .. . .   ..  :....:   .... .
CCDS53 PMMPYGTGL----TPQPIQNTNSLSILEEQQRQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
      30            40        50        60        70        80     

            130       140       150       160       170       180  
pF1KB7 ENSESQSPQSRLPSPSEQDVGLGLNSSSLSNSHSQLHPGDTDSVQPSPEKPNSDSLSLAS
       .....:. :. . . . :.      ... :..  ::  ..: .. : :         .. 
CCDS53 QQQQQQQQQQAVAAAAVQQSTSQQATQGTSGQAPQLFHSQTLTTAPLPGTTPLYPSPMTP
          90       100       110       120       130       140     

            190       200       210       220       230       240  
pF1KB7 ITPMTPMTPISECCGIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIR
       .::.:: :: ::  :::::::::::::::.:::::: :::.:.:::::::::::::::::
CCDS53 MTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIR
         150       160       170       180       190       200     

            250       260       270       280       290       300  
pF1KB7 EPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVR
       :::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::.
CCDS53 EPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVK
         210       220       230       240       250       260     

            310       320       330       340       350       360  
pF1KB7 FPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAF
       ::::::::::::::::::::::::::::::.:::::::::::::::::::: :.::::::
CCDS53 FPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAF
         270       280       290       300       310       320     

            370      
pF1KB7 ENIYPILKGFKKA 
       ::::::::::.:  
CCDS53 ENIYPILKGFRKTT
         330         

>>CCDS55077.1 TBP gene_id:6908|Hs108|chr6                 (319 aa)
 initn: 1429 init1: 1150 opt: 1217  Z-score: 992.3  bits: 192.1 E(32554): 6e-49
Smith-Waterman score: 1217; 61.8% identity (79.0% similar) in 319 aa overlap (56-374:3-317)

          30        40        50        60        70        80     
pF1KB7 PTVGLPSMEQEETYLELYLDQCAAQDGLAPPRSPLFSPVVPYDMYILNASNPDTAFNSNP
                                     :  :.:::..::   .    .:.   :.: 
CCDS55                             MTPGIPIFSPMMPYGTGL----TPQPIQNTNS
                                           10            20        

          90       100       110       120       130       140     
pF1KB7 EVKETSGDFSSVDLSFLPDEVTQENKDQPVISKHETEENSESQSPQSRLPSPSEQDVGLG
              . .. . .   ..  :....:   .... ......:. :. . . . :.    
CCDS55 LSILEEQQRQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQAVAAAAVQQSTSQ
       30        40        50        60        70        80        

         150       160       170       180       190       200     
pF1KB7 LNSSSLSNSHSQLHPGDTDSVQPSPEKPNSDSLSLASITPMTPMTPISECCGIVPQLQNI
         ... :..  ::  ..: .. : :         .. .::.:: :: ::  :::::::::
CCDS55 QATQGTSGQAPQLFHSQTLTTAPLPGTTPLYPSPMTPMTPITPATPASESSGIVPQLQNI
       90       100       110       120       130       140        

         210       220       230       240       250       260     
pF1KB7 VSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEE
       ::::::.:::::: :::.:.::::::::::::::::::::::::::::::::::::::::
CCDS55 VSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEE
      150       160       170       180       190       200        

         270       280       290       300       310       320     
pF1KB7 QSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPELF
       ::::::::::::::::::::.:::::::::::::::.:::::::::::::::::::::::
CCDS55 QSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELF
      210       220       230       240       250       260        

         330       340       350       360       370      
pF1KB7 PGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPILKGFKKA 
       :::::::.:::::::::::::::::::: :.::::::::::::::::.:  
CCDS55 PGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKTT
      270       280       290       300       310         

>>CCDS5168.1 TBPL1 gene_id:9519|Hs108|chr6                (186 aa)
 initn: 371 init1: 371 opt: 451  Z-score: 380.4  bits: 78.1 E(32554): 7.2e-15
Smith-Waterman score: 451; 41.7% identity (75.0% similar) in 168 aa overlap (202-369:13-178)

             180       190       200       210       220       230 
pF1KB7 KPNSDSLSLASITPMTPMTPISECCGIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNP
                                     . :.: .    :.:.:.::::.. :. :. 
CCDS51                   MDADSDVALDILITNVVCVFRTRCHLNLRKIALEGANVIYK-
                                 10        20        30        40  

             240       250       260       270       280       290 
pF1KB7 KRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFK
       .  . :.:..:.:: :: :.::::..:::: :::.....::. :: .::::: . : :::
CCDS51 RDVGKVLMKLRKPRITATIWSSGKIICTGATSEEEAKFGARRLARSLQKLGFQVIFTDFK
              50        60        70        80        90       100 

             300       310       320       330       340       350 
pF1KB7 IQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTG
       . :... :.. : :::  .. ...  .:::::: :.. ::. . : .: :: .:....::
CCDS51 VVNVLAVCNMPFEIRLPEFTKNNRPHASYEPELHPAVCYRIKSLRATLQIFSTGSITVTG
             110       120       130       140       150       160 

             360       370       
pF1KB7 AKERSEIYEAFENIYPILKGFKKA  
        . .. .  : :.:::..        
CCDS51 PNVKA-VATAVEQIYPFVFESRKEIL
              170       180      




375 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 16:42:13 2016 done: Mon Nov  7 16:42:13 2016
 Total Scan time:  3.230 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]