Result of FASTA (ccds) for
pFN21AB7608
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7608, 357 aa
1>>>pF1KB7608 357 - 357 aa - 357 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3289+/-0.000835; mu= 17.7385+/- 0.050
mean_var=85.1460+/-17.032, 0's: 0 Z-trim(109.0): 124 B-trim: 39 in 1/50
Lambda= 0.138993
statistics sampled from 10483 (10608) to 10483 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.701), E-opt: 0.2 (0.326), width: 16
Scan time: 2.880
The best scores are: opt bits E(32554)
CCDS41429.1 NR1I3 gene_id:9970|Hs108|chr1 ( 357) 2403 491.4 4.8e-139
CCDS41430.1 NR1I3 gene_id:9970|Hs108|chr1 ( 352) 2350 480.8 7.5e-136
CCDS41427.1 NR1I3 gene_id:9970|Hs108|chr1 ( 324) 2102 431.0 6.6e-121
CCDS44261.1 NR1I3 gene_id:9970|Hs108|chr1 ( 340) 2091 428.8 3.2e-120
CCDS44260.1 NR1I3 gene_id:9970|Hs108|chr1 ( 339) 2081 426.8 1.3e-119
CCDS53411.1 NR1I3 gene_id:9970|Hs108|chr1 ( 315) 1876 385.7 2.8e-107
CCDS53410.1 NR1I3 gene_id:9970|Hs108|chr1 ( 311) 1833 377.1 1.1e-104
CCDS1228.1 NR1I3 gene_id:9970|Hs108|chr1 ( 348) 1832 376.9 1.4e-104
CCDS44262.1 NR1I3 gene_id:9970|Hs108|chr1 ( 309) 1595 329.4 2.6e-90
CCDS53405.1 NR1I3 gene_id:9970|Hs108|chr1 ( 296) 1591 328.5 4.3e-90
CCDS41428.1 NR1I3 gene_id:9970|Hs108|chr1 ( 314) 1581 326.6 1.8e-89
CCDS53408.1 NR1I3 gene_id:9970|Hs108|chr1 ( 306) 1579 326.1 2.4e-89
CCDS53409.1 NR1I3 gene_id:9970|Hs108|chr1 ( 319) 1574 325.2 4.9e-89
CCDS53407.1 NR1I3 gene_id:9970|Hs108|chr1 ( 280) 1337 277.6 9e-75
CCDS53406.1 NR1I3 gene_id:9970|Hs108|chr1 ( 267) 1333 276.8 1.5e-74
CCDS44585.1 NR1H3 gene_id:10062|Hs108|chr11 ( 402) 493 108.5 1e-23
CCDS7929.1 NR1H3 gene_id:10062|Hs108|chr11 ( 447) 493 108.5 1.1e-23
CCDS73285.1 NR1H3 gene_id:10062|Hs108|chr11 ( 453) 493 108.5 1.1e-23
CCDS8757.1 VDR gene_id:7421|Hs108|chr12 ( 427) 479 105.7 7.6e-23
CCDS55820.1 VDR gene_id:7421|Hs108|chr12 ( 477) 479 105.7 8.2e-23
CCDS9078.1 NR1H4 gene_id:9971|Hs108|chr12 ( 472) 456 101.1 2e-21
CCDS55875.1 NR1H4 gene_id:9971|Hs108|chr12 ( 482) 456 101.1 2e-21
CCDS55873.1 NR1H4 gene_id:9971|Hs108|chr12 ( 476) 449 99.7 5.3e-21
CCDS55876.1 NR1H4 gene_id:9971|Hs108|chr12 ( 486) 449 99.7 5.4e-21
CCDS60830.1 ESRRA gene_id:2101|Hs108|chr11 ( 422) 439 97.7 2e-20
CCDS41667.1 ESRRA gene_id:2101|Hs108|chr11 ( 423) 436 97.1 3e-20
CCDS54627.1 NR1I2 gene_id:8856|Hs108|chr3 ( 397) 423 94.4 1.7e-19
CCDS58061.1 ESRRG gene_id:2104|Hs108|chr1 ( 470) 413 92.5 7.8e-19
CCDS42316.1 THRA gene_id:7067|Hs108|chr17 ( 410) 392 88.2 1.3e-17
CCDS32096.1 ESR2 gene_id:2100|Hs108|chr14 ( 495) 386 87.1 3.5e-17
CCDS58546.1 THRA gene_id:7067|Hs108|chr17 ( 451) 384 86.7 4.3e-17
CCDS61470.1 ESR2 gene_id:2100|Hs108|chr14 ( 474) 382 86.3 5.9e-17
CCDS55920.1 ESR2 gene_id:2100|Hs108|chr14 ( 481) 382 86.3 5.9e-17
CCDS9762.1 ESR2 gene_id:2100|Hs108|chr14 ( 530) 382 86.3 6.4e-17
CCDS43136.1 NR1I2 gene_id:8856|Hs108|chr3 ( 434) 371 84.0 2.5e-16
CCDS2995.1 NR1I2 gene_id:8856|Hs108|chr3 ( 473) 371 84.1 2.7e-16
CCDS11360.1 THRA gene_id:7067|Hs108|chr17 ( 490) 371 84.1 2.8e-16
CCDS2641.1 THRB gene_id:7068|Hs108|chr3 ( 461) 367 83.3 4.6e-16
CCDS8310.1 PGR gene_id:5241|Hs108|chr11 ( 933) 360 82.1 2.1e-15
CCDS12352.1 NR2F6 gene_id:2063|Hs108|chr19 ( 404) 344 78.6 1e-14
CCDS44584.1 NR1H3 gene_id:10062|Hs108|chr11 ( 387) 341 78.0 1.5e-14
CCDS42593.1 NR1H2 gene_id:7376|Hs108|chr19 ( 460) 336 77.0 3.4e-14
CCDS6856.1 NR5A1 gene_id:2516|Hs108|chr9 ( 461) 325 74.8 1.6e-13
CCDS34258.1 NR3C1 gene_id:2908|Hs108|chr5 ( 778) 326 75.2 2e-13
CCDS43965.1 AR gene_id:367|Hs108|chrX ( 388) 322 74.2 2.1e-13
CCDS58236.1 RARG gene_id:5916|Hs108|chr12 ( 382) 321 74.0 2.4e-13
CCDS58673.1 NR1H2 gene_id:7376|Hs108|chr19 ( 363) 320 73.7 2.7e-13
CCDS41790.1 RARG gene_id:5916|Hs108|chr12 ( 443) 321 74.0 2.7e-13
CCDS8850.1 RARG gene_id:5916|Hs108|chr12 ( 454) 321 74.0 2.7e-13
CCDS14387.1 AR gene_id:367|Hs108|chrX ( 920) 322 74.5 4e-13
>>CCDS41429.1 NR1I3 gene_id:9970|Hs108|chr1 (357 aa)
initn: 2403 init1: 2403 opt: 2403 Z-score: 2609.8 bits: 491.4 E(32554): 4.8e-139
Smith-Waterman score: 2403; 100.0% identity (100.0% similar) in 357 aa overlap (1-357:1-357)
10 20 30 40 50 60
pF1KB7 MASREDELRNCVVCGDQATGYHFNALTCEGCKGFFRRTVSKSIGPTCPFAGSCEVSKTQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MASREDELRNCVVCGDQATGYHFNALTCEGCKGFFRRTVSKSIGPTCPFAGSCEVSKTQR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 RHCPACRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQQTPVQLSKEQEELIRTLLGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 RHCPACRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQQTPVQLSKEQEELIRTLLGA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 HTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVLPLVTHFADINTFMVLQVIKFTKDLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 HTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVLPLVTHFADINTFMVLQVIKFTKDLP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 VFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQNFLCGPLRYTIEDGARVSPTVGFQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 VFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQNFLCGPLRYTIEDGARVSPTVGFQV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 EFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPAPYLTDRPGVTQRDEIDQLQEEMALT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 EFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPAPYLTDRPGVTQRDEIDQLQEEMALT
250 260 270 280 290 300
310 320 330 340 350
pF1KB7 LQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQHIQGLSAMMPLLQEICS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQHIQGLSAMMPLLQEICS
310 320 330 340 350
>>CCDS41430.1 NR1I3 gene_id:9970|Hs108|chr1 (352 aa)
initn: 1860 init1: 1860 opt: 2350 Z-score: 2552.4 bits: 480.8 E(32554): 7.5e-136
Smith-Waterman score: 2350; 98.6% identity (98.6% similar) in 357 aa overlap (1-357:1-352)
10 20 30 40 50 60
pF1KB7 MASREDELRNCVVCGDQATGYHFNALTCEGCKGFFRRTVSKSIGPTCPFAGSCEVSKTQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MASREDELRNCVVCGDQATGYHFNALTCEGCKGFFRRTVSKSIGPTCPFAGSCEVSKTQR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 RHCPACRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQQTPVQLSKEQEELIRTLLGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 RHCPACRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQQTPVQLSKEQEELIRTLLGA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 HTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVLPLVTHFADINTFMVLQVIKFTKDLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 HTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVLPLVTHFADINTFMVLQVIKFTKDLP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 VFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQNFLCGPLRYTIEDGARVSPTVGFQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 VFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQNFLCGPLRYTIEDGARVSPTVGFQV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 EFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPAPYLTDRPGVTQRDEIDQLQEEMALT
:::::::::::::::::::::::::::::::::: :::::::::::::::::::::
CCDS41 EFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSP-----DRPGVTQRDEIDQLQEEMALT
250 260 270 280 290
310 320 330 340 350
pF1KB7 LQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQHIQGLSAMMPLLQEICS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQHIQGLSAMMPLLQEICS
300 310 320 330 340 350
>>CCDS41427.1 NR1I3 gene_id:9970|Hs108|chr1 (324 aa)
initn: 1328 init1: 1328 opt: 2102 Z-score: 2284.1 bits: 431.0 E(32554): 6.6e-121
Smith-Waterman score: 2102; 98.8% identity (98.8% similar) in 322 aa overlap (36-357:7-324)
10 20 30 40 50 60
pF1KB7 DELRNCVVCGDQATGYHFNALTCEGCKGFFRRTVSKSIGPTCPFAGSCEVSKTQRRHCPA
::::::::::::::::::::::::::::::
CCDS41 MLPKRSRRTVSKSIGPTCPFAGSCEVSKTQRRHCPA
10 20 30
70 80 90 100 110 120
pF1KB7 CRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 CRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHM
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB7 GTMFEQFVQFRPPAHLFIHHQPLPTLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GTMFEQFVQFRPPAHLFIHHQPLPTLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSL
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB7 PIEDQISLLKGAAVEICHIVLNTTFCLQTQNFLCGPLRYTIEDGARVSPTVGFQVEFLEL
::::::::::::::::::::::::::::::::::::::::::::::: :::::::::
CCDS41 PIEDQISLLKGAAVEICHIVLNTTFCLQTQNFLCGPLRYTIEDGARV----GFQVEFLEL
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB7 LFHFHGTLRKLQLQEPEYVLLAAMALFSPAPYLTDRPGVTQRDEIDQLQEEMALTLQSYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LFHFHGTLRKLQLQEPEYVLLAAMALFSPAPYLTDRPGVTQRDEIDQLQEEMALTLQSYI
220 230 240 250 260 270
310 320 330 340 350
pF1KB7 KGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQHIQGLSAMMPLLQEICS
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 KGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQHIQGLSAMMPLLQEICS
280 290 300 310 320
>>CCDS44261.1 NR1I3 gene_id:9970|Hs108|chr1 (340 aa)
initn: 1586 init1: 1586 opt: 2091 Z-score: 2271.9 bits: 428.8 E(32554): 3.2e-120
Smith-Waterman score: 2091; 98.7% identity (98.7% similar) in 315 aa overlap (1-315:1-311)
10 20 30 40 50 60
pF1KB7 MASREDELRNCVVCGDQATGYHFNALTCEGCKGFFRRTVSKSIGPTCPFAGSCEVSKTQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MASREDELRNCVVCGDQATGYHFNALTCEGCKGFFRRTVSKSIGPTCPFAGSCEVSKTQR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 RHCPACRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQQTPVQLSKEQEELIRTLLGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 RHCPACRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQQTPVQLSKEQEELIRTLLGA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 HTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVLPLVTHFADINTFMVLQVIKFTKDLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 HTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVLPLVTHFADINTFMVLQVIKFTKDLP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 VFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQNFLCGPLRYTIEDGARVSPTVGFQV
:::::::::::::::::::::::::::::::::::::::::::::::::::: ::::
CCDS44 VFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQNFLCGPLRYTIEDGARV----GFQV
190 200 210 220 230
250 260 270 280 290 300
pF1KB7 EFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPAPYLTDRPGVTQRDEIDQLQEEMALT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 EFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPAPYLTDRPGVTQRDEIDQLQEEMALT
240 250 260 270 280 290
310 320 330 340 350
pF1KB7 LQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQHIQGLSAMMPLLQEICS
:::::::::::::::
CCDS44 LQSYIKGQQRRPRDRSPGTPWIHWSGKMLGPKIGPGSKGAQWLQ
300 310 320 330 340
>>CCDS44260.1 NR1I3 gene_id:9970|Hs108|chr1 (339 aa)
initn: 1860 init1: 1860 opt: 2081 Z-score: 2261.1 bits: 426.8 E(32554): 1.3e-119
Smith-Waterman score: 2081; 98.4% identity (98.4% similar) in 315 aa overlap (1-315:1-310)
10 20 30 40 50 60
pF1KB7 MASREDELRNCVVCGDQATGYHFNALTCEGCKGFFRRTVSKSIGPTCPFAGSCEVSKTQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MASREDELRNCVVCGDQATGYHFNALTCEGCKGFFRRTVSKSIGPTCPFAGSCEVSKTQR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 RHCPACRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQQTPVQLSKEQEELIRTLLGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 RHCPACRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQQTPVQLSKEQEELIRTLLGA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 HTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVLPLVTHFADINTFMVLQVIKFTKDLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 HTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVLPLVTHFADINTFMVLQVIKFTKDLP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 VFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQNFLCGPLRYTIEDGARVSPTVGFQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQNFLCGPLRYTIEDGARVSPTVGFQV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 EFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPAPYLTDRPGVTQRDEIDQLQEEMALT
:::::::::::::::::::::::::::::::::: :::::::::::::::::::::
CCDS44 EFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSP-----DRPGVTQRDEIDQLQEEMALT
250 260 270 280 290
310 320 330 340 350
pF1KB7 LQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQHIQGLSAMMPLLQEICS
:::::::::::::::
CCDS44 LQSYIKGQQRRPRDRSPGTPWIHWSGKMLGPKIGPGSKGAQWLQ
300 310 320 330
>>CCDS53411.1 NR1I3 gene_id:9970|Hs108|chr1 (315 aa)
initn: 1876 init1: 1876 opt: 1876 Z-score: 2039.4 bits: 385.7 E(32554): 2.8e-107
Smith-Waterman score: 1876; 100.0% identity (100.0% similar) in 280 aa overlap (36-315:7-286)
10 20 30 40 50 60
pF1KB7 DELRNCVVCGDQATGYHFNALTCEGCKGFFRRTVSKSIGPTCPFAGSCEVSKTQRRHCPA
::::::::::::::::::::::::::::::
CCDS53 MLPKRSRRTVSKSIGPTCPFAGSCEVSKTQRRHCPA
10 20 30
70 80 90 100 110 120
pF1KB7 CRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 CRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHM
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB7 GTMFEQFVQFRPPAHLFIHHQPLPTLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 GTMFEQFVQFRPPAHLFIHHQPLPTLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSL
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB7 PIEDQISLLKGAAVEICHIVLNTTFCLQTQNFLCGPLRYTIEDGARVSPTVGFQVEFLEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 PIEDQISLLKGAAVEICHIVLNTTFCLQTQNFLCGPLRYTIEDGARVSPTVGFQVEFLEL
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB7 LFHFHGTLRKLQLQEPEYVLLAAMALFSPAPYLTDRPGVTQRDEIDQLQEEMALTLQSYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LFHFHGTLRKLQLQEPEYVLLAAMALFSPAPYLTDRPGVTQRDEIDQLQEEMALTLQSYI
220 230 240 250 260 270
310 320 330 340 350
pF1KB7 KGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQHIQGLSAMMPLLQEICS
::::::::::
CCDS53 KGQQRRPRDRSPGTPWIHWSGKMLGPKIGPGSKGAQWLQ
280 290 300 310
>>CCDS53410.1 NR1I3 gene_id:9970|Hs108|chr1 (311 aa)
initn: 1328 init1: 1328 opt: 1833 Z-score: 1992.8 bits: 377.1 E(32554): 1.1e-104
Smith-Waterman score: 1833; 98.6% identity (98.6% similar) in 280 aa overlap (36-315:7-282)
10 20 30 40 50 60
pF1KB7 DELRNCVVCGDQATGYHFNALTCEGCKGFFRRTVSKSIGPTCPFAGSCEVSKTQRRHCPA
::::::::::::::::::::::::::::::
CCDS53 MLPKRSRRTVSKSIGPTCPFAGSCEVSKTQRRHCPA
10 20 30
70 80 90 100 110 120
pF1KB7 CRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 CRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHM
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB7 GTMFEQFVQFRPPAHLFIHHQPLPTLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 GTMFEQFVQFRPPAHLFIHHQPLPTLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSL
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB7 PIEDQISLLKGAAVEICHIVLNTTFCLQTQNFLCGPLRYTIEDGARVSPTVGFQVEFLEL
::::::::::::::::::::::::::::::::::::::::::::::: :::::::::
CCDS53 PIEDQISLLKGAAVEICHIVLNTTFCLQTQNFLCGPLRYTIEDGARV----GFQVEFLEL
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB7 LFHFHGTLRKLQLQEPEYVLLAAMALFSPAPYLTDRPGVTQRDEIDQLQEEMALTLQSYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LFHFHGTLRKLQLQEPEYVLLAAMALFSPAPYLTDRPGVTQRDEIDQLQEEMALTLQSYI
220 230 240 250 260 270
310 320 330 340 350
pF1KB7 KGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQHIQGLSAMMPLLQEICS
::::::::::
CCDS53 KGQQRRPRDRSPGTPWIHWSGKMLGPKIGPGSKGAQWLQ
280 290 300 310
>>CCDS1228.1 NR1I3 gene_id:9970|Hs108|chr1 (348 aa)
initn: 2083 init1: 1586 opt: 1832 Z-score: 1991.1 bits: 376.9 E(32554): 1.4e-104
Smith-Waterman score: 2307; 97.5% identity (97.5% similar) in 357 aa overlap (1-357:1-348)
10 20 30 40 50 60
pF1KB7 MASREDELRNCVVCGDQATGYHFNALTCEGCKGFFRRTVSKSIGPTCPFAGSCEVSKTQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MASREDELRNCVVCGDQATGYHFNALTCEGCKGFFRRTVSKSIGPTCPFAGSCEVSKTQR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 RHCPACRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQQTPVQLSKEQEELIRTLLGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RHCPACRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQQTPVQLSKEQEELIRTLLGA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 HTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVLPLVTHFADINTFMVLQVIKFTKDLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 HTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVLPLVTHFADINTFMVLQVIKFTKDLP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 VFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQNFLCGPLRYTIEDGARVSPTVGFQV
:::::::::::::::::::::::::::::::::::::::::::::::::::: ::::
CCDS12 VFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQNFLCGPLRYTIEDGARV----GFQV
190 200 210 220 230
250 260 270 280 290 300
pF1KB7 EFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPAPYLTDRPGVTQRDEIDQLQEEMALT
:::::::::::::::::::::::::::::::::: :::::::::::::::::::::
CCDS12 EFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSP-----DRPGVTQRDEIDQLQEEMALT
240 250 260 270 280 290
310 320 330 340 350
pF1KB7 LQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQHIQGLSAMMPLLQEICS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQHIQGLSAMMPLLQEICS
300 310 320 330 340
>>CCDS44262.1 NR1I3 gene_id:9970|Hs108|chr1 (309 aa)
initn: 1589 init1: 1589 opt: 1595 Z-score: 1734.9 bits: 329.4 E(32554): 2.6e-90
Smith-Waterman score: 1985; 86.6% identity (86.6% similar) in 357 aa overlap (1-357:1-309)
10 20 30 40 50 60
pF1KB7 MASREDELRNCVVCGDQATGYHFNALTCEGCKGFFRRTVSKSIGPTCPFAGSCEVSKTQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MASREDELRNCVVCGDQATGYHFNALTCEGCKGFFRRTVSKSIGPTCPFAGSCEVSKTQR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 RHCPACRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQQTPVQLSKEQEELIRTLLGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 RHCPACRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQQTPVQLSKEQEELIRTLLGA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 HTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVLPLVTHFADINTFMVLQVIKFTKDLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 HTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVLPLVTHFADINTFMVLQVIKFTKDLP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 VFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQNFLCGPLRYTIEDGARVSPTVGFQV
:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQNFLCGPLRYTIEDGAR---------
190 200 210 220 230
250 260 270 280 290 300
pF1KB7 EFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPAPYLTDRPGVTQRDEIDQLQEEMALT
:::::::::::::::::::::
CCDS44 ---------------------------------------DRPGVTQRDEIDQLQEEMALT
240 250
310 320 330 340 350
pF1KB7 LQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQHIQGLSAMMPLLQEICS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQHIQGLSAMMPLLQEICS
260 270 280 290 300
>>CCDS53405.1 NR1I3 gene_id:9970|Hs108|chr1 (296 aa)
initn: 1589 init1: 1589 opt: 1591 Z-score: 1730.9 bits: 328.5 E(32554): 4.3e-90
Smith-Waterman score: 1716; 84.8% identity (84.8% similar) in 315 aa overlap (1-315:1-267)
10 20 30 40 50 60
pF1KB7 MASREDELRNCVVCGDQATGYHFNALTCEGCKGFFRRTVSKSIGPTCPFAGSCEVSKTQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MASREDELRNCVVCGDQATGYHFNALTCEGCKGFFRRTVSKSIGPTCPFAGSCEVSKTQR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 RHCPACRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQQTPVQLSKEQEELIRTLLGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 RHCPACRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQQTPVQLSKEQEELIRTLLGA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 HTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVLPLVTHFADINTFMVLQVIKFTKDLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 HTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVLPLVTHFADINTFMVLQVIKFTKDLP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 VFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQNFLCGPLRYTIEDGARVSPTVGFQV
:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 VFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQNFLCGPLRYTIEDGAR---------
190 200 210 220 230
250 260 270 280 290 300
pF1KB7 EFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPAPYLTDRPGVTQRDEIDQLQEEMALT
:::::::::::::::::::::
CCDS53 ---------------------------------------DRPGVTQRDEIDQLQEEMALT
240 250
310 320 330 340 350
pF1KB7 LQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQHIQGLSAMMPLLQEICS
:::::::::::::::
CCDS53 LQSYIKGQQRRPRDRSPGTPWIHWSGKMLGPKIGPGSKGAQWLQ
260 270 280 290
357 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 18:51:34 2016 done: Sun Nov 6 18:51:35 2016
Total Scan time: 2.880 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]