FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7577, 218 aa
  1>>>pF1KB7577 218 - 218 aa - 218 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.7173+/-0.000357; mu= -2.6688+/- 0.022
 mean_var=326.9720+/-67.110, 0's: 0 Z-trim(124.1): 1  B-trim: 0 in 0/62
 Lambda= 0.070928
 statistics sampled from 45051 (45052) to 45051 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.805), E-opt: 0.2 (0.528), width:  16
 Scan time:  5.760

The best scores are:                                      opt bits E(85289)
NP_006275 (OMIM: 600475) transcription initiation  ( 218) 1424 157.9 1.2e-38


>>NP_006275 (OMIM: 600475) transcription initiation fact  (218 aa)
 initn: 1424 init1: 1424 opt: 1424  Z-score: 815.0  bits: 157.9 E(85289): 1.2e-38
Smith-Waterman score: 1424; 100.0% identity (100.0% similar) in 218 aa overlap (1-218:1-218)

               10        20        30        40        50        60
pF1KB7 MSCSGSGADPEAAPASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MSCSGSGADPEAAPASAASAPGPAPPVSAPAALPSSTAAENKASPAGTAGGPGAGAAAGG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 TGPLAARAGEPAERRGAAPVSAGGAAPPEGAISNGVYVLPSAANGDVKPVVSSTPLVDFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 TGPLAARAGEPAERRGAAPVSAGGAAPPEGAISNGVYVLPSAANGDVKPVVSSTPLVDFL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 MQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCKMKGTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MQLEDYTPTIPDAVTGYYLNRAGFEASDPRIIRLISLAAQKFISDIANDALQHCKMKGTA
              130       140       150       160       170       180

              190       200       210        
pF1KB7 SGSSRSKSKDRKYTLTMEDLTPALSEYGINVKKPHYFT
       ::::::::::::::::::::::::::::::::::::::
NP_006 SGSSRSKSKDRKYTLTMEDLTPALSEYGINVKKPHYFT
              190       200       210        




218 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 15:16:05 2016 done: Sun Nov  6 15:16:06 2016
 Total Scan time:  5.760 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]