Result of FASTA (omim) for
pFN21AB7576
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7576, 284 aa
1>>>pF1KB7576 284 - 284 aa - 284 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.6751+/-0.000334; mu= -0.2745+/- 0.021
mean_var=344.7736+/-68.420, 0's: 0 Z-trim(126.2): 196 B-trim: 114 in 1/60
Lambda= 0.069073
statistics sampled from 51274 (51520) to 51274 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.849), E-opt: 0.2 (0.604), width: 16
Scan time: 8.330
The best scores are: opt bits E(85289)
NP_005160 (OMIM: 602078,602753) paired mesoderm ho ( 284) 1976 209.4 6.6e-54
NP_003915 (OMIM: 209880,603851,613013) paired meso ( 314) 948 107.0 4.8e-23
NP_115485 (OMIM: 604529) homeobox protein orthoped ( 325) 387 51.1 3.3e-06
NP_000545 (OMIM: 120970,268000,602225,613829) cone ( 299) 383 50.6 4.2e-06
NP_620689 (OMIM: 300004,300215,300382,300419,30835 ( 562) 386 51.2 5.1e-06
NP_001306003 (OMIM: 605726,610362,610381,613757) r ( 230) 375 49.7 6.1e-06
NP_006483 (OMIM: 136760,606014) homeobox protein a ( 343) 371 49.5 1e-05
XP_016870292 (OMIM: 604675) PREDICTED: paired meso ( 193) 365 48.6 1.1e-05
NP_057391 (OMIM: 604675) paired mesoderm homeobox ( 253) 365 48.8 1.3e-05
NP_005020 (OMIM: 107250,602669,610623) pituitary h ( 302) 363 48.6 1.7e-05
NP_001257454 (OMIM: 600037,610125,613986) homeobox ( 297) 355 47.8 2.9e-05
NP_068374 (OMIM: 600037,610125,613986) homeobox pr ( 297) 355 47.8 2.9e-05
NP_116142 (OMIM: 605726,610362,610381,613757) reti ( 184) 348 46.9 3.4e-05
NP_001263380 (OMIM: 606701) dorsal root ganglia ho ( 263) 348 47.1 4.3e-05
NP_038463 (OMIM: 601881,611038) retinal homeobox p ( 346) 350 47.4 4.5e-05
NP_001257452 (OMIM: 600037,610125,613986) homeobox ( 289) 347 47.0 4.9e-05
NP_758840 (OMIM: 600037,610125,613986) homeobox pr ( 289) 347 47.0 4.9e-05
NP_001257453 (OMIM: 600037,610125,613986) homeobox ( 289) 347 47.0 4.9e-05
NP_068745 (OMIM: 605420,609597,613451,615529) home ( 411) 344 46.9 7.6e-05
XP_006711451 (OMIM: 167420,202650) PREDICTED: pair ( 198) 336 45.8 8.1e-05
NP_008833 (OMIM: 167420,202650) paired mesoderm ho ( 217) 336 45.8 8.6e-05
NP_073207 (OMIM: 167420,202650) paired mesoderm ho ( 245) 336 45.9 9.3e-05
NP_055377 (OMIM: 600036) homeobox protein OTX1 [Ho ( 354) 336 46.0 0.00012
NP_001186699 (OMIM: 600036) homeobox protein OTX1 ( 354) 336 46.0 0.00012
NP_852126 (OMIM: 122880,148820,193500,268220,60659 ( 403) 335 46.0 0.00014
NP_852125 (OMIM: 122880,148820,193500,268220,60659 ( 407) 335 46.0 0.00014
NP_852122 (OMIM: 122880,148820,193500,268220,60659 ( 479) 335 46.1 0.00016
NP_001120838 (OMIM: 122880,148820,193500,268220,60 ( 483) 335 46.1 0.00016
NP_852123 (OMIM: 122880,148820,193500,268220,60659 ( 484) 335 46.1 0.00016
NP_852124 (OMIM: 122880,148820,193500,268220,60659 ( 505) 335 46.1 0.00016
XP_011537084 (OMIM: 601527,613456) PREDICTED: ALX ( 231) 321 44.3 0.00025
XP_016855778 (OMIM: 607410) PREDICTED: diencephalo ( 377) 324 44.9 0.00029
XP_011538970 (OMIM: 607410) PREDICTED: diencephalo ( 377) 324 44.9 0.00029
NP_757379 (OMIM: 607410) diencephalon/mesencephalo ( 377) 324 44.9 0.00029
NP_671725 (OMIM: 607410) diencephalon/mesencephalo ( 382) 324 44.9 0.00029
NP_703149 (OMIM: 300154) homeobox protein ESX1 [Ho ( 406) 324 44.9 0.0003
NP_008913 (OMIM: 601527,613456) ALX homeobox prote ( 326) 321 44.5 0.00032
NP_001290437 (OMIM: 612019) intestine-specific hom ( 245) 316 43.9 0.00037
NP_006252 (OMIM: 262600,601538) homeobox protein p ( 226) 312 43.4 0.00046
NP_001128726 (OMIM: 167410,268220) paired box prot ( 505) 317 44.3 0.00056
NP_039236 (OMIM: 167410,268220) paired box protein ( 518) 317 44.3 0.00057
NP_002575 (OMIM: 167410,268220) paired box protein ( 520) 317 44.3 0.00057
NP_001243201 (OMIM: 122000,148300,605020,614195) v ( 301) 311 43.5 0.0006
XP_016883326 (OMIM: 122000,148300,605020,614195) P ( 280) 310 43.3 0.00062
NP_878314 (OMIM: 142993,610092,610093) visual syst ( 361) 311 43.5 0.00068
NP_055403 (OMIM: 122000,148300,605020,614195) visu ( 365) 310 43.5 0.00073
XP_006713791 (OMIM: 602504) PREDICTED: short statu ( 190) 297 41.8 0.0012
XP_016862544 (OMIM: 602504) PREDICTED: short statu ( 190) 297 41.8 0.0012
XP_016862543 (OMIM: 602504) PREDICTED: short statu ( 204) 297 41.9 0.0012
XP_016862542 (OMIM: 602504) PREDICTED: short statu ( 204) 297 41.9 0.0012
>>NP_005160 (OMIM: 602078,602753) paired mesoderm homeob (284 aa)
initn: 1976 init1: 1976 opt: 1976 Z-score: 1088.8 bits: 209.4 E(85289): 6.6e-54
Smith-Waterman score: 1976; 100.0% identity (100.0% similar) in 284 aa overlap (1-284:1-284)
10 20 30 40 50 60
pF1KB7 MDYSYLNSYDSCVAAMEASAYGDFGACSQPGGFQYSPLRPAFPAAGPPCPALGSSNCALG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MDYSYLNSYDSCVAAMEASAYGDFGACSQPGGFQYSPLRPAFPAAGPPCPALGSSNCALG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 ALRDHQPAPYSAVPYKFFPEPSGLHEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 ALRDHQPAPYSAVPYKFFPEPSGLHEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 EELALKIDLTEARVQVWFQNRRAKFRKQERAASAKGAAGAAGAKKGEARCSSEDDDSKES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 EELALKIDLTEARVQVWFQNRRAKFRKQERAASAKGAAGAAGAKKGEARCSSEDDDSKES
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 TCSPTPDSTASLPPPPAPGLASPRLSPSPLPVALGSGPGPGPGPQPLKGALWAGVAGGGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 TCSPTPDSTASLPPPPAPGLASPRLSPSPLPVALGSGPGPGPGPQPLKGALWAGVAGGGG
190 200 210 220 230 240
250 260 270 280
pF1KB7 GGPGAGAAELLKAWQPAESGPGPFSGVLSSFHRKPGPALKTNLF
::::::::::::::::::::::::::::::::::::::::::::
NP_005 GGPGAGAAELLKAWQPAESGPGPFSGVLSSFHRKPGPALKTNLF
250 260 270 280
>>NP_003915 (OMIM: 209880,603851,613013) paired mesoderm (314 aa)
initn: 917 init1: 684 opt: 948 Z-score: 534.7 bits: 107.0 E(85289): 4.8e-23
Smith-Waterman score: 963; 55.1% identity (72.0% similar) in 321 aa overlap (1-284:4-314)
10 20 30 40 50
pF1KB7 MDYSYLNS--YDSCVAAME----ASAYGDFGACSQPGGFQYSPLRPAFPAAGPPCPA
:.:::::: :.::.:.:. ::::.::..::: .::::.:.: .: :.. ::.
NP_003 MYKMEYSYLNSSAYESCMAGMDTSSLASAYADFSSCSQASGFQYNPIRTTFGATSG-CPS
10 20 30 40 50
60 70 80 90 100 110
pF1KB7 LGSSNCALGALRDHQPAPYSAVPYKFFPEPSGLHEKRKQRRIRTTFTSAQLKELERVFAE
: ..:.::.::::: .::.:::::.: . .::.::::::::::::::::::::::::::
NP_003 LTPGSCSLGTLRDHQSSPYAAVPYKLFTDHGGLNEKRKQRRIRTTFTSAQLKELERVFAE
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB7 THYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQERAASAKGAAGAAGAKKGEARCS
:::::::::::::::::::::::::::::::::::::::::.: .::. :.. :. :
NP_003 THYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQERAAAAAAAAAKNGSS-GKKSDS
120 130 140 150 160 170
180 190 200 210 220
pF1KB7 SEDDDSKESTCSPTPDSTASLPPPPAPGLASPRLS--------PSPLPVALGSGPGPGPG
:.::.:::. : ::::.. : : : .: . ::: . ..::: :::
NP_003 SRDDESKEAK-STDPDSTGGPGPNPNP---TPSCGANGGGGGGPSPAGAPGAAGPG-GPG
180 190 200 210 220 230
230 240 250 260
pF1KB7 PQPLKG------------ALWAGVAGGGG----GGPGAGAAELLKAWQPAESGP----GP
.: :: : :..:..:: :::: : : . : : : ::
NP_003 GEPGKGGAAAAAAAAAAAAAAAAAAAAGGLAAAGGPGQGWAP---GPGPITSIPDSLGGP
240 250 260 270 280 290
270 280
pF1KB7 FSGVLSSFHRKPGP--AL-KTNLF
:..::::..: : :: :...:
NP_003 FASVLSSLQRPNGAKAALVKSSMF
300 310
>>NP_115485 (OMIM: 604529) homeobox protein orthopedia [ (325 aa)
initn: 362 init1: 304 opt: 387 Z-score: 232.4 bits: 51.1 E(85289): 3.3e-06
Smith-Waterman score: 415; 36.7% identity (60.0% similar) in 270 aa overlap (28-263:36-284)
10 20 30 40 50
pF1KB7 MDYSYLNSYDSCVAAMEASAYGDFGACSQPGGF------QYSPLRPAFPAAGPPCPA
:.::: . .:.. : : .
NP_115 DLLDARLGMKDAAELLGHREAVKCRLGVGGSDPGGHPGDLAPNSDPVEGATLLPGEDITT
10 20 30 40 50 60
60 70 80 90 100
pF1KB7 LGSSNCALGALR---DHQPAPYSAVPYKFFPEPS--GLHE-KRKQRRIRTTFTSAQLKEL
.::. .:.. :.::.: .. :.:: : .. ..::.: :: :: :::.::
NP_115 VGSTPASLAVSAKDPDKQPGPQGG------PNPSQAGQQQGQQKQKRHRTRFTPAQLNEL
70 80 90 100 110
110 120 130 140 150
pF1KB7 ERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQERAAS---AKG------
:: ::.::::::. ::::::.: :::.::::::::::::..:...... : :
NP_115 ERSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAKWKKRKKTTNVFRAPGTLLPTP
120 130 140 150 160 170
160 170 180 190 200
pF1KB7 -------AAGAAGAKKGEARCSSEDDDSKESTCSPTPDSTASLPPPPAPGLASPRLSPSP
::.::.: :.. :: . .:.. .. . : ....:: ::: : . .. :
NP_115 GLPQFPSAAAAAAAAMGDSLCSFHANDTRWAAAA-MP-GVSQLPLPPALG-RQQAMAQSL
180 190 200 210 220 230
210 220 230 240 250 260
pF1KB7 LPVALGSGPGPGPGPQPLKGALWAGVAGGGGGGPGAGAAELLKAWQPAESG------PGP
.:..:: :. :.... .:. ::: : .::: : :::
NP_115 SQCSLAAGPPPNS----------MGLSNSLAGSNGAGLQSHL--YQPAFPGMVPASLPGP
240 250 260 270 280
270 280
pF1KB7 FSGVLSSFHRKPGPALKTNLF
NP_115 SNVSGSPQLCSSPDSSDVWRGTSIASLRRKALEHTVSMSFT
290 300 310 320
>>NP_000545 (OMIM: 120970,268000,602225,613829) cone-rod (299 aa)
initn: 358 init1: 334 opt: 383 Z-score: 230.6 bits: 50.6 E(85289): 4.2e-06
Smith-Waterman score: 386; 37.5% identity (58.3% similar) in 240 aa overlap (48-279:7-222)
20 30 40 50 60 70
pF1KB7 ASAYGDFGACSQPGGFQYSPLRPAFPAAGPPCPALGSSNCAL-GALRD--HQPAPYSAVP
: : . . :: : : :: .:: ..:
NP_000 MMAYMNPGPHYSVNALALSGPSVDLMHQAVPYPSAP
10 20 30
80 90 100 110 120 130
pF1KB7 YKFFPEPSGLHEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARV
::::: ::::: .::.::: .::.:.:::.:.:::.::::.: :.::
NP_000 -------------RKQRRERTTFTRSQLEELEALFAKTQYPDVYAREEVALKINLPESRV
40 50 60 70 80
140 150 160 170 180 190
pF1KB7 QVWFQNRRAKFR--KQERAASAKGAAGAAGAKKGEARCSSEDDDSKESTCSPTPDSTASL
::::.::::: : .:.. . . .: : :. .. . .. : . .: : : . ..
NP_000 QVWFKNRRAKCRQQRQQQKQQQQPPGGQAKARPAKRKAGTSPRPSTD-VC-PDPLGISDS
90 100 110 120 130 140
200 210 220 230 240 250
pF1KB7 PPPPAPGLASPRLSPSPLPVALGSGPGPGPGPQPLKGALWAGVAGGGGGGPGAGAAELLK
:: :: : ::. :: : .:. . .:: : ::....: :. .:
NP_000 YSPPLPG---PSGSPTT-AVATVSIWSPA-SESPLPEAQRAGLVASG---PSLTSAPYAM
150 160 170 180 190
260 270 280
pF1KB7 AWQPAE---SGPGPFSGVLSSFHRKPGPALKTNLF
.. :: :.:. . : ::. : :
NP_000 TYAPASAFCSSPSAY-GSPSSYFSGLDPYLSPMVPQLGGPALSPLSGPSVGPSLAQSPTS
200 210 220 230 240 250
>>NP_620689 (OMIM: 300004,300215,300382,300419,308350,30 (562 aa)
initn: 510 init1: 355 opt: 386 Z-score: 229.0 bits: 51.2 E(85289): 5.1e-06
Smith-Waterman score: 402; 43.9% identity (60.6% similar) in 198 aa overlap (87-269:325-518)
60 70 80 90 100 110
pF1KB7 CALGALRDHQPAPYSAVPYKFFPEPSGLHEKRKQRRIRTTFTSAQLKELERVFAETHYPD
:::::: :::::: ::.::::.: .:::::
NP_620 LLLHPEDAEGKDGEDSVCLSAGSDSEEGLLKRKQRRYRTTFTSYQLEELERAFQKTHYPD
300 310 320 330 340 350
120 130 140 150 160 170
pF1KB7 IYTREELALKIDLTEARVQVWFQNRRAKFRKQERAASAKGAAGAA--GAKKGEARCSSED
..::::::...:::::::::::::::::.::.:.:.. : : .. :
NP_620 VFTREELAMRLDLTEARVQVWFQNRRAKWRKREKAGAQTHPPGLPFPGPLSATHPLSPYL
360 370 380 390 400 410
180 190 200 210 220
pF1KB7 DDSKESTCSPTPDS--TA----------SLPPPPAPGLASPRLSPSPLPVALGSGPGPGP
: : :. :: :: ::::::. . : .: : . ::.. :
NP_620 DASPFPPHHPALDSAWTAAAAAAAAAFPSLPPPPGSASLPPSGAPLGLSTFLGAAVFRHP
420 430 440 450 460 470
230 240 250 260 270 280
pF1KB7 G-PQPLKGALWAGVAGGGGGGPGAGAAELLKAWQPAESGPGPFSGVLSSFHRKPGPALKT
. .: : :.. .: ... :: ::. :: : ::.:.
NP_620 AFISPAFGRLFSTMAPLTSAST---AAALLRQPTPAVEGAVA-SGALADPATAAADRRAS
480 490 500 510 520 530
pF1KB7 NLF
NP_620 SIAALRLKAKEHAAQLTQLNILPGTSTGKEVC
540 550 560
>>NP_001306003 (OMIM: 605726,610362,610381,613757) retin (230 aa)
initn: 375 init1: 314 opt: 375 Z-score: 227.7 bits: 49.7 E(85289): 6.1e-06
Smith-Waterman score: 388; 38.6% identity (55.0% similar) in 249 aa overlap (16-257:1-230)
10 20 30 40 50
pF1KB7 MDYSYLNSYDSCVAAMEASAYG-DF-GACSQPGGFQYSPLRPAFPAAGPPCPALGSSNCA
: : . : :: :: : : : : ::..:: : : .
NP_001 MPAPVEGTDFPGAGRQAWGSPALSLPVAPPAVSPPSVPLPSHQ--
10 20 30 40
60 70 80 90 100 110
pF1KB7 LGALRDHQPAPYSAVPYKFFPEPSGLHEKRKQRRIRTTFTSAQLKELERVFAETHYPDIY
.::. .:. :. . :. :.:.:: :::::. ::..:::.: .::::.:
NP_001 VGAMF-LSPGEGPATEGGGLG-PGEEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVY
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB7 TREELALKIDLTEARVQVWFQNRRAKFRKQERAASAKGAAGAAGAKKGEARCSSEDDDSK
.::::: :. : :.::::::::::::.:.::: :..::..: .. :
NP_001 SREELAAKVHLPEVRVQVWFQNRRAKWRRQERLESGSGAVAAPRLPEAPAL---------
110 120 130 140 150
180 190 200 210 220 230
pF1KB7 ESTCSPTPDSTASLPPPPAPGLASPRLSPSPLPVALGSGPG--PGPGPQPLKGALWAGVA
: : . : : .:: : :. :: :: ::: . ::. . .. : :
NP_001 -PFARP-PAMSLPLEPWLGPG---PPAVPG-LPRLLGPGPGLQASFGPHAFAPTFADGFA
160 170 180 190 200
240 250 260 270 280
pF1KB7 GGGGGG---PGAGAAELLKAWQPAESGPGPFSGVLSSFHRKPGPALKTNLF
.. : : .:: ::
NP_001 LEEASLRLLAKEHAQALDRAWPPA
210 220 230
>>NP_006483 (OMIM: 136760,606014) homeobox protein arist (343 aa)
initn: 372 init1: 324 opt: 371 Z-score: 223.5 bits: 49.5 E(85289): 1e-05
Smith-Waterman score: 371; 36.0% identity (57.3% similar) in 253 aa overlap (28-275:98-332)
10 20 30 40 50
pF1KB7 MDYSYLNSYDSCVAAMEASAYGDFGACSQPGGFQYSPLR-PAFPAAGPPCPALGSSN
:. ..: :: . : :: :: .
NP_006 PAKYLQDLGPGPALNGGHFYEGPAEAEEKTSKAASFPQLPLDCRGGPRDGPSN-LQGSPG
70 80 90 100 110 120
60 70 80 90 100 110
pF1KB7 CALGALRDHQPAPYSAVPYKFFPEPSGL-HEKRKQRRIRTTFTSAQLKELERVFAETHYP
:..: : : : .:. : ..: :.:: ::::.. ::.:::.:: .::::
NP_006 PCLASL--HLPLS----PG--LPDSMELAKNKSKKRRNRTTFSTFQLEELEKVFQKTHYP
130 140 150 160 170
120 130 140 150 160 170
pF1KB7 DIYTREELALKIDLTEARVQVWFQNRRAKFRKQERAASAK-GAAGAAGAKKGEARCSSED
:.:.::.:::. :::::::::::::::::.::.:: .. . : ..: . ...
NP_006 DVYAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKIQEGRNPFTAAYDISVLPRTDS
180 190 200 210 220 230
180 190 200 210 220 230
pF1KB7 DDSKESTCSPTPDSTASLPPPPAPGLASPRLSPSPL--PVALGSGPGPGPGPQPLKGALW
. ... .: : . : .: :.::. ::: : . : : : .:
NP_006 HPQLQNSLWASPGSGS----PGGPCLVSPEGIPSPCMSPYSHPHGSVAGFMGVPAPSAAH
240 250 260 270 280 290
240 250 260 270 280
pF1KB7 AGVAGGGGGGPGAGAAELLKAWQPAESGPGPFSGVLSSFHRKPGPALKTNLF
:. . : : :. ....:. .: : : :.. ::
NP_006 PGIYSIHGFPPTLGG----HSFEPSSDGDYK-SPSLVSLRVKPKEPPGLLNWTT
300 310 320 330 340
>>XP_016870292 (OMIM: 604675) PREDICTED: paired mesoderm (193 aa)
initn: 365 init1: 335 opt: 365 Z-score: 223.2 bits: 48.6 E(85289): 1.1e-05
Smith-Waterman score: 365; 49.6% identity (70.7% similar) in 133 aa overlap (79-203:30-161)
50 60 70 80 90 100
pF1KB7 CPALGSSNCALGALRDHQPAPYSAVPYKFFPEP---SGLHEKRKQRRIRTTFTSAQLKEL
: : :. ..:.:::: ::::.:.::. :
XP_016 MGPLHRETGPERSGHRLKVTELGCGEGECPSPGRGSAAKRKKKQRRNRTTFNSSQLQAL
10 20 30 40 50
110 120 130 140 150 160
pF1KB7 ERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQERAASAKGAAGAAGAKK
:::: .::::: ..::::: ...:.::::::::::::::::..::: :. .:. . .
XP_016 ERVFERTHYPDAFVREELARRVNLSEARVQVWFQNRRAKFRRNERAMLASRSASLLKSYS
60 70 80 90 100 110
170 180 190 200 210 220
pF1KB7 GEARCSSEDDDSKESTCSPTPDS-TASLP----PPPAPGLASPRLSPSPLPVALGSGPGP
:: . . .. :: : ::: : :: .:: ..:
XP_016 QEAAIE-QPVAPRPTALSPDYLSWTASSPYSTVPPYSPGSSGPATPGVNMANSIASLRLK
120 130 140 150 160 170
230 240 250 260 270 280
pF1KB7 GPGPQPLKGALWAGVAGGGGGGPGAGAAELLKAWQPAESGPGPFSGVLSSFHRKPGPALK
XP_016 AKEFSLHHSQVPTVN
180 190
>>NP_057391 (OMIM: 604675) paired mesoderm homeobox prot (253 aa)
initn: 421 init1: 335 opt: 365 Z-score: 221.8 bits: 48.8 E(85289): 1.3e-05
Smith-Waterman score: 365; 49.6% identity (70.7% similar) in 133 aa overlap (79-203:90-221)
50 60 70 80 90 100
pF1KB7 CPALGSSNCALGALRDHQPAPYSAVPYKFFPEP---SGLHEKRKQRRIRTTFTSAQLKEL
: : :. ..:.:::: ::::.:.::. :
NP_057 GARAEAREGAAREPSGGSSGSEAAPQDGECPSPGRGSAAKRKKKQRRNRTTFNSSQLQAL
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB7 ERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQERAASAKGAAGAAGAKK
:::: .::::: ..::::: ...:.::::::::::::::::..::: :. .:. . .
NP_057 ERVFERTHYPDAFVREELARRVNLSEARVQVWFQNRRAKFRRNERAMLASRSASLLKSYS
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB7 GEARCSSEDDDSKESTCSPTPDS-TASLP----PPPAPGLASPRLSPSPLPVALGSGPGP
:: . . .. :: : ::: : :: .:: ..:
NP_057 QEAAIE-QPVAPRPTALSPDYLSWTASSPYSTVPPYSPGSSGPATPGVNMANSIASLRLK
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB7 GPGPQPLKGALWAGVAGGGGGGPGAGAAELLKAWQPAESGPGPFSGVLSSFHRKPGPALK
NP_057 AKEFSLHHSQVPTVN
240 250
>>NP_005020 (OMIM: 107250,602669,610623) pituitary homeo (302 aa)
initn: 387 init1: 291 opt: 363 Z-score: 219.8 bits: 48.6 E(85289): 1.7e-05
Smith-Waterman score: 365; 39.7% identity (55.7% similar) in 219 aa overlap (45-248:21-228)
20 30 40 50 60 70
pF1KB7 AMEASAYGDFGACSQPGGFQYSPLRPAFPAAGPPCPALGSSNCALGALRDHQPAPYSAVP
:: : : : .: : . : : .:
NP_005 MEFGLLSEAEARSPALSLSDAGTPHPQLPEHGCKGQEHSDSEKASAS-LP
10 20 30 40
80 90 100 110 120 130
pF1KB7 YKFFPEPSGLHEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARV
:: ..: :.:::: :: ::: ::.::: .: ...:::. ::::.:. .::::::
NP_005 GGS-PEDGSL--KKKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARV
50 60 70 80 90 100
140 150 160 170 180 190
pF1KB7 QVWFQNRRAKFRKQERAASAKGAAGAAGAKKGEARCSSEDDDSKESTCSPTPDSTASLPP
.:::.:::::.::.::. .:. :. .: : :. : . : . : ::
NP_005 RVWFKNRRAKWRKRERSQQAELCKGSFAAPLGGLVPPYEEVYPGYSYGNWPPKALA--PP
110 120 130 140 150 160
200 210 220 230
pF1KB7 ------PPA-------PGLASPRLSPSPLPVALGSGPGPG--PGPQPLKGALWAGVAGGG
: : : ..: .:: : .: . :. . :: : ::: : :
NP_005 LAAKTFPFAFNSVNVGPLASQPVFSP-PSSIAASMVPSAAAAPGTVPGPGAL----QGLG
170 180 190 200 210
240 250 260 270 280
pF1KB7 GGGPGAGAAELLKAWQPAESGPGPFSGVLSSFHRKPGPALKTNLF
:: :: . :
NP_005 GGPPGLAPAAVSSGAVSCPYASAAAAAAAAASSPYVYRDPCNSSLASLRLKAKQHASFSY
220 230 240 250 260 270
284 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 23:41:52 2016 done: Mon Nov 7 23:41:53 2016
Total Scan time: 8.330 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]