Result of FASTA (omim) for
pFN21AB7566
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7566, 277 aa
1>>>pF1KB7566 277 - 277 aa - 277 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.0360+/-0.000324; mu= 9.5432+/- 0.020
mean_var=194.0020+/-40.056, 0's: 0 Z-trim(121.9): 247 B-trim: 569 in 1/54
Lambda= 0.092081
statistics sampled from 38911 (39193) to 38911 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.789), E-opt: 0.2 (0.46), width: 16
Scan time: 8.110
The best scores are: opt bits E(85289)
NP_796374 (OMIM: 605955) homeobox protein Nkx-6.2 ( 277) 1889 262.6 5.8e-70
XP_016872278 (OMIM: 605955) PREDICTED: homeobox pr ( 277) 1884 261.9 9.2e-70
NP_006159 (OMIM: 602563) homeobox protein Nkx-6.1 ( 367) 969 140.5 4.3e-33
XP_016868632 (OMIM: 610772) PREDICTED: homeobox pr ( 265) 751 111.4 1.8e-24
NP_061815 (OMIM: 142992,612109) homeobox protein H ( 348) 316 53.8 5.4e-07
NP_002439 (OMIM: 106600,142983,189500,608874) home ( 303) 292 50.5 4.5e-06
NP_068777 (OMIM: 142995) H2.0-like homeobox protei ( 488) 287 50.1 9.7e-06
NP_005512 (OMIM: 186770) T-cell leukemia homeobox ( 330) 282 49.2 1.2e-05
NP_005506 (OMIM: 142994,176450) motor neuron and p ( 401) 270 47.7 4.1e-05
NP_004089 (OMIM: 269160,600035) homeobox protein E ( 252) 263 46.5 5.8e-05
NP_001182446 (OMIM: 186770) T-cell leukemia homeob ( 257) 262 46.4 6.4e-05
NP_001099044 (OMIM: 613380) homeobox protein HMX3 ( 357) 261 46.5 8.7e-05
NP_001158727 (OMIM: 142994,176450) motor neuron an ( 189) 256 45.5 9.2e-05
XP_005269800 (OMIM: 600647) PREDICTED: homeobox pr ( 273) 257 45.8 0.00011
NP_005510 (OMIM: 600647) homeobox protein HMX2 [Ho ( 273) 257 45.8 0.00011
NP_066305 (OMIM: 604640) T-cell leukemia homeobox ( 291) 257 45.8 0.00011
NP_001180 (OMIM: 602183,613330) homeobox protein N ( 333) 257 45.9 0.00012
NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [ ( 255) 253 45.2 0.00015
NP_004088 (OMIM: 600034) homeobox protein EMX1 [Ho ( 290) 252 45.2 0.00017
NP_006483 (OMIM: 136760,606014) homeobox protein a ( 343) 252 45.2 0.00019
XP_011538046 (OMIM: 186770) PREDICTED: T-cell leuk ( 342) 251 45.1 0.00021
NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [ ( 320) 249 44.8 0.00025
NP_001129743 (OMIM: 217095,611770) homeobox protei ( 301) 248 44.6 0.00026
NP_067545 (OMIM: 603260) homeobox protein BarH-lik ( 254) 246 44.3 0.00028
NP_038463 (OMIM: 601881,611038) retinal homeobox p ( 346) 248 44.7 0.00028
NP_689781 (OMIM: 610772) homeobox protein Nkx-6.3 ( 135) 241 43.3 0.00029
NP_057254 (OMIM: 604240) T-cell leukemia homeobox ( 284) 246 44.4 0.0003
NP_149416 (OMIM: 607808) homeobox protein Nkx-2.4 ( 354) 247 44.6 0.00031
XP_011530999 (OMIM: 600034) PREDICTED: homeobox pr ( 119) 239 43.0 0.00032
NP_000200 (OMIM: 125853,260370,600733,606176,60639 ( 283) 244 44.1 0.00036
NP_002720 (OMIM: 604420) hematopoietically-express ( 270) 243 43.9 0.00038
NP_005211 (OMIM: 104510,190320,600525) homeobox pr ( 287) 241 43.7 0.00048
XP_016867454 (OMIM: 603354) PREDICTED: homeobox pr ( 203) 235 42.7 0.00066
XP_016867453 (OMIM: 603354) PREDICTED: homeobox pr ( 204) 235 42.7 0.00066
NP_001418 (OMIM: 131310) homeobox protein engraile ( 333) 238 43.4 0.00069
NP_005212 (OMIM: 220600,600028) homeobox protein D ( 289) 236 43.0 0.00076
NP_004396 (OMIM: 126255) homeobox protein DLX-2 [H ( 328) 236 43.1 0.00082
NP_008827 (OMIM: 142950) homeobox protein Hox-A7 [ ( 230) 233 42.5 0.00086
NP_835221 (OMIM: 600029) homeobox protein DLX-1 is ( 255) 233 42.6 0.00092
NP_001476 (OMIM: 601135) homeobox protein GBX-2 is ( 348) 235 43.0 0.00094
NP_001092304 (OMIM: 603354) homeobox protein GBX-1 ( 363) 235 43.0 0.00097
NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 232 42.5 0.001
NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 232 42.5 0.001
NP_002440 (OMIM: 123101,168500,168550,604757) home ( 267) 232 42.5 0.001
NP_001243268 (OMIM: 602041) homeobox protein Nkx-3 ( 159) 228 41.7 0.0011
NP_036608 (OMIM: 604295) ventral anterior homeobox ( 290) 232 42.5 0.0011
NP_001925 (OMIM: 601911,616788) homeobox protein D ( 168) 228 41.7 0.0011
XP_016879780 (OMIM: 601911,616788) PREDICTED: home ( 168) 228 41.7 0.0011
XP_011538047 (OMIM: 186770) PREDICTED: T-cell leuk ( 269) 231 42.3 0.0011
XP_005250242 (OMIM: 220600,600028) PREDICTED: home ( 161) 227 41.5 0.0012
>>NP_796374 (OMIM: 605955) homeobox protein Nkx-6.2 [Hom (277 aa)
initn: 1889 init1: 1889 opt: 1889 Z-score: 1377.0 bits: 262.6 E(85289): 5.8e-70
Smith-Waterman score: 1889; 100.0% identity (100.0% similar) in 277 aa overlap (1-277:1-277)
10 20 30 40 50 60
pF1KB7 MDTNRPGAFVLSSAPLAALHNMAEMKTSLFPYALQGPAGFKAPALGGLGAQLPLGTPHGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_796 MDTNRPGAFVLSSAPLAALHNMAEMKTSLFPYALQGPAGFKAPALGGLGAQLPLGTPHGI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 SDILGRPVGAAGGGLLGGLPRLNGLASSAGVYFGPAAAVARGYPKPLAELPGRPPIFWPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_796 SDILGRPVGAAGGGLLGGLPRLNGLASSAGVYFGPAAAVARGYPKPLAELPGRPPIFWPG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 VVQGAPWRDPRLAGPAPAGGVLDKDGKKKHSRPTFSGQQIFALEKTFEQTKYLAGPERAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_796 VVQGAPWRDPRLAGPAPAGGVLDKDGKKKHSRPTFSGQQIFALEKTFEQTKYLAGPERAR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 LAYSLGMTESQVKVWFQNRRTKWRKRHAAEMASAKKKQDSDAEKLKVGGSDAEDDDEYNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_796 LAYSLGMTESQVKVWFQNRRTKWRKRHAAEMASAKKKQDSDAEKLKVGGSDAEDDDEYNR
190 200 210 220 230 240
250 260 270
pF1KB7 PLDPNSDDEKITRLLKKHKPSNLALVSPCGGGAGDAL
:::::::::::::::::::::::::::::::::::::
NP_796 PLDPNSDDEKITRLLKKHKPSNLALVSPCGGGAGDAL
250 260 270
>>XP_016872278 (OMIM: 605955) PREDICTED: homeobox protei (277 aa)
initn: 1884 init1: 1884 opt: 1884 Z-score: 1373.4 bits: 261.9 E(85289): 9.2e-70
Smith-Waterman score: 1884; 99.6% identity (100.0% similar) in 277 aa overlap (1-277:1-277)
10 20 30 40 50 60
pF1KB7 MDTNRPGAFVLSSAPLAALHNMAEMKTSLFPYALQGPAGFKAPALGGLGAQLPLGTPHGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDTNRPGAFVLSSAPLAALHNMAEMKTSLFPYALQGPAGFKAPALGGLGAQLPLGTPHGI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 SDILGRPVGAAGGGLLGGLPRLNGLASSAGVYFGPAAAVARGYPKPLAELPGRPPIFWPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SDILGRPVGAAGGGLLGGLPRLNGLASSAGVYFGPAAAVARGYPKPLAELPGRPPIFWPG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 VVQGAPWRDPRLAGPAPAGGVLDKDGKKKHSRPTFSGQQIFALEKTFEQTKYLAGPERAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VVQGAPWRDPRLAGPAPAGGVLDKDGKKKHSRPTFSGQQIFALEKTFEQTKYLAGPERAR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 LAYSLGMTESQVKVWFQNRRTKWRKRHAAEMASAKKKQDSDAEKLKVGGSDAEDDDEYNR
::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::
XP_016 LAYSLGMTESQVKVWFQNRRTKWRKRHAVEMASAKKKQDSDAEKLKVGGSDAEDDDEYNR
190 200 210 220 230 240
250 260 270
pF1KB7 PLDPNSDDEKITRLLKKHKPSNLALVSPCGGGAGDAL
:::::::::::::::::::::::::::::::::::::
XP_016 PLDPNSDDEKITRLLKKHKPSNLALVSPCGGGAGDAL
250 260 270
>>NP_006159 (OMIM: 602563) homeobox protein Nkx-6.1 [Hom (367 aa)
initn: 1064 init1: 699 opt: 969 Z-score: 715.1 bits: 140.5 E(85289): 4.3e-33
Smith-Waterman score: 1007; 58.0% identity (71.3% similar) in 300 aa overlap (31-274:63-355)
10 20 30 40 50
pF1KB7 MDTNRPGAFVLSSAPLAALHNMAEMKTSLFPYALQGPAGFKAPALGGLGA------QLPL
: . ..:.:.: :: :::.. ::
NP_006 TPLYPAAYPPLPAGPPSSSSSSSSSSSPSPPLGTHNPGGLKPPATGGLSSLGSPPQQLSA
40 50 60 70 80 90
60 70
pF1KB7 GTPHGISDILGRPV-----GAA------GG------------------------------
.:::::.:::.:: ::: .:
NP_006 ATPHGINDILSRPSMPVASGAALPSASPSGSSSSSSSSASASSASAAAAAAAAAAAAASS
100 110 120 130 140 150
80 90 100 110 120
pF1KB7 --GLLGGLPRLNGLASSA---GVYFGPAAAV--ARG-YPKPLAELPGRPPIFWPGVVQGA
:::.::::...:. :.::.:.::. : : ::::::::::: :::::::.:.
NP_006 PAGLLAGLPRFSSLSPPPPPPGLYFSPSAAAVAAVGRYPKPLAELPGRTPIFWPGVMQSP
160 170 180 190 200 210
130 140 150 160 170 180
pF1KB7 PWRDPRLAGPAPAGGVL-DKDGKKKHSRPTFSGQQIFALEKTFEQTKYLAGPERARLAYS
:::: ::: :..: :::::.::.:::::::::::::::::::::::::::::::::
NP_006 PWRDARLACTPHQGSILLDKDGKRKHTRPTFSGQQIFALEKTFEQTKYLAGPERARLAYS
220 230 240 250 260 270
190 200 210 220 230 240
pF1KB7 LGMTESQVKVWFQNRRTKWRKRHAAEMASAKKKQDSDAEKLKVGGSDAEDDDEYNRPLDP
:::::::::::::::::::::.::::::.:::::::..:.:: .. . :.::.::.::::
NP_006 LGMTESQVKVWFQNRRTKWRKKHAAEMATAKKKQDSETERLKGASENEEEDDDYNKPLDP
280 290 300 310 320 330
250 260 270
pF1KB7 NSDDEKITRLLKKHKPSNLALVSPCGGGAGDAL
::::::::.:::::: :. :::.:
NP_006 NSDDEKITQLLKKHKSSS-------GGGGGLLLHASEPESSS
340 350 360
>>XP_016868632 (OMIM: 610772) PREDICTED: homeobox protei (265 aa)
initn: 724 init1: 401 opt: 751 Z-score: 560.2 bits: 111.4 E(85289): 1.8e-24
Smith-Waterman score: 790; 51.5% identity (72.0% similar) in 264 aa overlap (1-259:1-252)
10 20 30 40 50 60
pF1KB7 MDTNRPGAFVLSSAPLAALHNMAEMKTSLFPYALQGPAGFKAPALGGLGAQLPLGTPHGI
:..: :.:.:...::: .. :::. . :..:. .: . ::: :: ::::::
XP_016 MESNLQGTFLLNNTPLA---QFPEMKAPVCQYSVQN--SFYKLSPPGLGPQLAAGTPHGI
10 20 30 40 50
70 80 90 100 110
pF1KB7 SDILGRPVGAAGGGLLGGLPRLNGLA--SSAGVYFGPAAAVARGYPKPLAELPGRPPIFW
.:::.:::.: ...::.: :.. :.. :: :::..: .. .. : : : : :
XP_016 TDILSRPVAAPNNSLLSGYPHVAGFGGLSSQGVYYSPQVG---NFSKAGNEYPTRTRNCW
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB7 PGVVQGAPWRDPRLAGPAPAGGVLDKDGKKKHSRPTFSGQQIFALEKTFEQTKYLAGPER
. : :: : . .: . :. ::::.::::.:.::::::::::::::::::::
XP_016 ADT--GQDWRGGRQCSNTP-DPLSDSIHKKKHTRPTFTGHQIFALEKTFEQTKYLAGPER
120 130 140 150 160
180 190 200 210 220 230
pF1KB7 ARLAYSLGMTESQVKVWFQNRRTKWRKRHAAEMASAKKKQDSDAEKLKVGGSDA---EDD
:::::::::::::::::::::::::::. : : .:. . . : .::. : ..:
XP_016 ARLAYSLGMTESQVKVWFQNRRTKWRKKSALEPSSSTPRAPGGAGA-GAGGDRAPSENED
170 180 190 200 210 220
240 250 260 270
pF1KB7 DEYNRPLDPNSDDEKITRLLKKHKPSNLALVSPCGGGAGDAL
::::.::::.:::::: ::.::.
XP_016 DEYNKPLDPDSDDEKIRLLLRKHRAAFSVLSLGAHSV
230 240 250 260
>>NP_061815 (OMIM: 142992,612109) homeobox protein HMX1 (348 aa)
initn: 301 init1: 277 opt: 316 Z-score: 246.5 bits: 53.8 E(85289): 5.4e-07
Smith-Waterman score: 325; 40.2% identity (56.9% similar) in 204 aa overlap (36-214:76-269)
10 20 30 40 50 60
pF1KB7 PGAFVLSSAPLAALHNMAEMKTSLFPYALQGPAGF-KAPALGGLGAQLPLGT--PHGISD
::.: .: :: : :: : :: : :
NP_061 EEDDDDPEDEDAEQARRRRLQRRRQLLAGTGPGGEARARALLGPGA-LGLGPRPPPGP--
50 60 70 80 90 100
70 80 90 100 110 120
pF1KB7 ILGRPVGAAGGGLLGGLPRLNGLASSAGVYFGPAAAVARGYPKPLAELPGRPPIFWP-GV
: : . . :: :: .: . : ..: .. : :. :. :: :: :
NP_061 --GPPFALGCGGAARWYPRAHG---GYGGGLSPDTS-DRDSPETGEEM-GRAEGAWPRGP
110 120 130 140 150
130 140 150 160
pF1KB7 VQGAPWRDP-RLA--GPA------------PA------GGVLDKDGKKKHSRPTFSGQQI
:: :. .:: ::: :: ::: :.::..: .:: .:.
NP_061 GPGAVQREAAELAARGPAAGTEEASELAEVPAAAGETRGGVGVGGGRKKKTRTVFSRSQV
160 170 180 190 200 210
170 180 190 200 210 220
pF1KB7 FALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRKRHAAEMASAKKKQDS
: ::.::. .::.. ::: :: :: .::.:::.::::::.::... :::. .:
NP_061 FQLESTFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQLAAELEAASLSPPG
220 230 240 250 260 270
230 240 250 260 270
pF1KB7 DAEKLKVGGSDAEDDDEYNRPLDPNSDDEKITRLLKKHKPSNLALVSPCGGGAGDAL
NP_061 AQRLVRVPVLYHESPPAAAAAGPPATLPFPLAPAAPAPPPPLLGFSGALAYPLAAFPAAA
280 290 300 310 320 330
>>NP_002439 (OMIM: 106600,142983,189500,608874) homeobox (303 aa)
initn: 283 init1: 183 opt: 292 Z-score: 230.0 bits: 50.5 E(85289): 4.5e-06
Smith-Waterman score: 292; 30.3% identity (60.6% similar) in 221 aa overlap (6-215:33-239)
10 20 30
pF1KB7 MDTNRPGAFVLSSAPLAALHNMAEMKTS--LFPYA
:.: . ..: ..: .. :. :.: :.:..
NP_002 PAADMTSLPLGVKVEDSAFGKPAGGGAGQAPSAAAATAAAMGADEEGAKPKVSPSLLPFS
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB7 LQG-PAGFKAPAL--GGLGAQLPLGTPHGISDILGRPVGAAGGGLLGGLPRLNGLASSAG
... : . :. ..:. . . . : .. :: : :. :. . :: : : .:
NP_002 VEALMADHRKPGAKESALAPSEGVQAAGGSAQPLGVPPGSLGAPDAPSSPRPLGHFSVGG
70 80 90 100 110 120
100 110 120 130 140
pF1KB7 VYFGPAAAVARGYPKPLAELPGRPPIFWPGVVQGAPW-RDPRLAGP-----APAGGVLDK
. : :... :: : .: . .:: ..::.. : .: . .: :
NP_002 LLKLPEDALVK------AESPEKP--------ERTPWMQSPRFSPPPARRLSPPACTLRK
130 140 150 160
150 160 170 180 190 200
pF1KB7 DGKKKHSRPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWR
... : :. :..:::. :.: .::. :::... ::..::.:::.::::::.: .
NP_002 HKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAK
170 180 190 200 210 220
210 220 230 240 250 260
pF1KB7 KRHAAEMASAKKKQDSDAEKLKVGGSDAEDDDEYNRPLDPNSDDEKITRLLKKHKPSNLA
. . ::. . :
NP_002 RLQEAELEKLKMAAKPMLPPAAFGLSFPLGGPAAVAAAAGASLYGASGPFQRAALPVAPV
230 240 250 260 270 280
>>NP_068777 (OMIM: 142995) H2.0-like homeobox protein [H (488 aa)
initn: 273 init1: 245 opt: 287 Z-score: 224.0 bits: 50.1 E(85289): 9.7e-06
Smith-Waterman score: 287; 38.6% identity (59.7% similar) in 176 aa overlap (75-240:203-365)
50 60 70 80 90 100
pF1KB7 LGGLGAQLPLGTPHGISDILGRPVGAAGGGLLGGLP---RLNGLASSAGVYFGPAAAVAR
: :: : .:.:: ::: .:. . .
NP_068 DLKFGIDRILSAEFDPKVKEGNTLRDLTSLLTGGRPAGVHLSGLQPSAGQFFASLDPINE
180 190 200 210 220 230
110 120 130 140 150
pF1KB7 GYPKPLAELPGRPPIFWPGVVQGAPWRDPRLAGPAPAGGVLDKDG-------KKKHSRPT
. :. : . : . :: ..: . :: .:: :: :.. :: .
NP_068 A-SAILSPLNSNPR----NSVQHQ-FQDT-FPGPY---AVLTKDTMPQTYKRKRSWSRAV
240 250 260 270 280
160 170 180 190 200 210
pF1KB7 FSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRKRHAAEMASA
::. : .::: :: ::.. :.: .:: ::.:..:::::::::: :: ::. : :.:
NP_068 FSNLQRKGLEKRFEIQKYVTKPDRKQLAAMLGLTDAQVKVWFQNRRMKW--RHSKE-AQA
290 300 310 320 330
220 230 240 250 260 270
pF1KB7 KKKQDSDAEKLKVGGSDAEDDDEYNRPLDPNSDDEKITRLLKKHKPSNLALVSPCGGGAG
.: .:..: . ::. : : .. .:
NP_068 QKDKDKEAGEKPSGGAPAADGEQDERSPSRSEGEAESESSDSESLDMAPSDTERTEGSER
340 350 360 370 380 390
>>NP_005512 (OMIM: 186770) T-cell leukemia homeobox prot (330 aa)
initn: 311 init1: 248 opt: 282 Z-score: 222.4 bits: 49.2 E(85289): 1.2e-05
Smith-Waterman score: 359; 41.1% identity (59.9% similar) in 202 aa overlap (32-218:74-270)
10 20 30 40 50 60
pF1KB7 DTNRPGAFVLSSAPLAALHNMAEMKTSLFPYALQGPAGFKAPALGGLGAQL-PLGTPHGI
:. ::.: .:: :: . .. :: ...
NP_005 EYGLGCLVGGAYTYGGGGSAAATGAGGAGAYGTGGPGGPGGPAGGGGACSMGPLTGSYNV
50 60 70 80 90 100
70 80 90 100 110
pF1KB7 SDIL-GRPVGAAGGGLLGGLPRLNGLASSAGVYFGPAA---AVARGYPKPLAE-LPGRPP
. : : : ..::: :: : :.::: :: : : ..:.::: :: :
NP_005 NMALAGGPGPGGGGGSSGG----AGALSAAGVIRVPAHRPLAGAVAHPQPLATGLPTVPS
110 120 130 140 150
120 130 140 150 160
pF1KB7 I-FWPGV--VQGA--PWRDP--RLAGPAPAGGVLDK--DGKKKHSRPTFSGQQIFALEKT
. ::: . : :: . : . .: .. :::. : .:. :: :::
NP_005 VPAMPGVNNLTGLTFPWMESNRRYTKDRFTGHPYQNRTPPKKKKPRTSFTRLQICELEKR
160 170 180 190 200 210
170 180 190 200 210 220
pF1KB7 FEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRKRHAAEMASAKKKQDSDAEKLK
:.. ::::. ::: :: .: ::..:::.:::::::::: :..:: :...:
NP_005 FHRQKYLASAERAALAKALKMTDAQVKTWFQNRRTKWR-RQTAEEREAERQQANRILLQL
220 230 240 250 260 270
230 240 250 260 270
pF1KB7 VGGSDAEDDDEYNRPLDPNSDDEKITRLLKKHKPSNLALVSPCGGGAGDAL
NP_005 QQEAFQKSLAQPLPADPLCVHNSSLFALQNLQPWSDDSTKITSVTSVASACE
280 290 300 310 320 330
>>NP_005506 (OMIM: 142994,176450) motor neuron and pancr (401 aa)
initn: 291 init1: 236 opt: 270 Z-score: 212.8 bits: 47.7 E(85289): 4.1e-05
Smith-Waterman score: 304; 32.1% identity (55.6% similar) in 243 aa overlap (33-262:122-355)
10 20 30 40 50 60
pF1KB7 TNRPGAFVLSSAPLAALHNMAEMKTSLFPYALQGPAGFKAPALGGLGAQLPLGTPHGISD
: . :. : : :::. : : : .
NP_005 PKPGFLGAGGGGGGTGGGHGGPHHHAHPGAAAAAAAAAAAAAAGGLALGLH---PGGAQG
100 110 120 130 140
70 80 90 100 110
pF1KB7 ILGRPVGAAGGGLLGGLPRLN-GLASSAGVYFGPAAAVARGYPKPLAELPGRP--PI-FW
: :. :: : : : . . :..:.. : :.. .::. . :..: :: .
NP_005 GAGLPAQAA----LYGHPVYGYSAAAAAAALAGQHPALSYSYPQVQGAHPAHPADPIKLG
150 160 170 180 190 200
120 130 140 150 160 170
pF1KB7 PGVVQGAPWRDPRLAGPA-PAGGVLDKD------GKKKHSRPTFSGQQIFALEKTFEQTK
:. : : :: : .... :: .. : .:..::.. ::. :. .:
NP_005 AGTFQLDQWLRASTAGMILPKMPDFNSQAQSNLLGKCRRPRTAFTSQQLLELEHQFKLNK
210 220 230 240 250 260
180 190 200 210 220
pF1KB7 YLAGPERARLAYSLGMTESQVKVWFQNRRTKW-RKRHAAEMASAK-KKQDSDAEKLKVGG
::. :.: ..: :: .::.:::.:::::: :: :...: :.:. . .:: . . ::
NP_005 YLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKKAKEQAAQEAEKQKGGGGGAGKGG
270 280 290 300 310 320
230 240 250 260 270
pF1KB7 SDAEDDDEYNRPLDPNSDDEKITRLLKKHKPSNLALVSPCGGGAGDAL
.. .: : : :. : :. . :.
NP_005 AEEPGAEELLGP--PAPGDKGSGRRLRDLRDSDPEEDEDEDDEDHFPYSNGASVHAASSD
330 340 350 360 370 380
NP_005 CSSEDDSPPPRPSHQPAPQ
390 400
>>NP_004089 (OMIM: 269160,600035) homeobox protein EMX2 (252 aa)
initn: 239 init1: 216 opt: 263 Z-score: 210.1 bits: 46.5 E(85289): 5.8e-05
Smith-Waterman score: 263; 34.6% identity (64.1% similar) in 153 aa overlap (104-248:105-252)
80 90 100 110 120 130
pF1KB7 GLLGGLPRLNGLASSAGVYFGPAAAVARGYPKPLAELPGRPP-IFWPGVVQGAPWRDPRL
:.:: : : :.: ... . :.
NP_004 VSHPPNPAVPVHPVPPPHALAAHPLPSSHSPHPLFASQQRDPSTFYPWLIHRYRYLGHRF
80 90 100 110 120 130
140 150 160 170 180
pF1KB7 AG--PAPAGGVLDKD--GKKKHSRPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMT
: .: . .: . : :. : .:: .:.. ::..::...:..: :: .::.::..:
NP_004 QGNDTSPESFLLHNALARKPKRIRTAFSPSQLLRLEHAFEKNHYVVGAERKQLAHSLSLT
140 150 160 170 180 190
190 200 210 220 230 240
pF1KB7 ESQVKVWFQNRRTKWRKRHAAEMAS---AKKKQDSDAEKLKVGGSDAEDDDEYNRPLDPN
:.::::::::::::..... : .: ::: .. ... ..: .. .: .
NP_004 ETQVKVWFQNRRTKFKRQKLEEEGSDSQQKKKGTHHINRWRIATKQASPEE-----IDVT
200 210 220 230 240
250 260 270
pF1KB7 SDDEKITRLLKKHKPSNLALVSPCGGGAGDAL
:::
NP_004 SDD
250
277 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 05:33:49 2016 done: Sun Nov 6 05:33:50 2016
Total Scan time: 8.110 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]