FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7560, 272 aa
  1>>>pF1KB7560 272 - 272 aa - 272 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.1492+/-0.000282; mu= 8.7717+/- 0.018
 mean_var=144.5640+/-29.316, 0's: 0 Z-trim(123.3): 1  B-trim: 2126 in 1/54
 Lambda= 0.106670
 statistics sampled from 42930 (42931) to 42930 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.813), E-opt: 0.2 (0.503), width:  16
 Scan time:  8.460

The best scores are:                                      opt bits E(85289)
NP_000529 (OMIM: 209920,601861) regulatory factor  ( 272) 1804 288.1 1.2e-77


>>NP_000529 (OMIM: 209920,601861) regulatory factor X-as  (272 aa)
 initn: 1804 init1: 1804 opt: 1804  Z-score: 1515.1  bits: 288.1 E(85289): 1.2e-77
Smith-Waterman score: 1804; 100.0% identity (100.0% similar) in 272 aa overlap (1-272:1-272)

               10        20        30        40        50        60
pF1KB7 MEAQGVAEGAGPGAASGVPHPAALAPAAAPTLAPASVAAAASQFTLLVMQPCAGQDEAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MEAQGVAEGAGPGAASGVPHPAALAPAAAPTLAPASVAAAASQFTLLVMQPCAGQDEAAA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 PGGSVGAGKPVRYLCEGAGDGEEEAGEDEADLLDTSDPPGGGESAASLEDLEDEETHSGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 PGGSVGAGKPVRYLCEGAGDGEEEAGEDEADLLDTSDPPGGGESAASLEDLEDEETHSGG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 EGSSGGARRRGSGGGSMSKTCTYEGCSETTSQVAKQRKPWMCKKHRNKMYKDKYKKKKSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 EGSSGGARRRGSGGGSMSKTCTYEGCSETTSQVAKQRKPWMCKKHRNKMYKDKYKKKKSD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 QALNCGGTASTGSAGNVKLEESADNILSIVKQRTGSFGDRPARPTLLEQVLNQKRLSLLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 QALNCGGTASTGSAGNVKLEESADNILSIVKQRTGSFGDRPARPTLLEQVLNQKRLSLLR
              190       200       210       220       230       240

              250       260       270  
pF1KB7 SPEVVQFLQKQQQLLNQQVLEQRQQQFPGTSM
       ::::::::::::::::::::::::::::::::
NP_000 SPEVVQFLQKQQQLLNQQVLEQRQQQFPGTSM
              250       260       270  




272 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 03:12:11 2016 done: Mon Nov  7 03:12:12 2016
 Total Scan time:  8.460 Total Display time: -0.050

Function used was FASTA [36.3.4 Apr, 2011]