Result of FASTA (ccds) for
pFN21AB7544
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7544, 262 aa
1>>>pF1KB7544 262 - 262 aa - 262 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.4722+/-0.000817; mu= 2.0627+/- 0.049
mean_var=205.7253+/-41.103, 0's: 0 Z-trim(115.0): 67 B-trim: 0 in 0/54
Lambda= 0.089419
statistics sampled from 15478 (15545) to 15478 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.799), E-opt: 0.2 (0.478), width: 16
Scan time: 2.630
The best scores are: opt bits E(32554)
CCDS33080.1 SPIB gene_id:6689|Hs108|chr19 ( 262) 1805 244.5 5.7e-65
CCDS59412.1 SPIB gene_id:6689|Hs108|chr19 ( 177) 1138 158.3 3.4e-39
CCDS58674.1 SPIB gene_id:6689|Hs108|chr19 ( 171) 994 139.7 1.3e-33
CCDS7933.2 SPI1 gene_id:6688|Hs108|chr11 ( 270) 617 91.2 8e-19
CCDS44591.1 SPI1 gene_id:6688|Hs108|chr11 ( 271) 615 91.0 9.6e-19
>>CCDS33080.1 SPIB gene_id:6689|Hs108|chr19 (262 aa)
initn: 1805 init1: 1805 opt: 1805 Z-score: 1279.9 bits: 244.5 E(32554): 5.7e-65
Smith-Waterman score: 1805; 100.0% identity (100.0% similar) in 262 aa overlap (1-262:1-262)
10 20 30 40 50 60
pF1KB7 MLALEAAQLDGPHFSCLYPDGVFYDLDSCKHSSYPDSEGAPDSLWDWTVAPPVPATPYEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MLALEAAQLDGPHFSCLYPDGVFYDLDSCKHSSYPDSEGAPDSLWDWTVAPPVPATPYEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 FDPAAAAFSHPQAAQLCYEPPTYSPAGNLELAPSLEAPGPGLPAYPTENFASQTLVPPAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 FDPAAAAFSHPQAAQLCYEPPTYSPAGNLELAPSLEAPGPGLPAYPTENFASQTLVPPAY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 APYPSPVLSEEEDLPLDSPALEVSDSESDEALVAGPEGKGSEAGTRKKLRLYQFLLGLLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 APYPSPVLSEEEDLPLDSPALEVSDSESDEALVAGPEGKGSEAGTRKKLRLYQFLLGLLT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 RGDMRECVWWVEPGAGVFQFSSKHKELLARRWGQQKGNRKRMTYQKLARALRNYAKTGEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RGDMRECVWWVEPGAGVFQFSSKHKELLARRWGQQKGNRKRMTYQKLARALRNYAKTGEI
190 200 210 220 230 240
250 260
pF1KB7 RKVKRKLTYQFDSALLPAVRRA
::::::::::::::::::::::
CCDS33 RKVKRKLTYQFDSALLPAVRRA
250 260
>>CCDS59412.1 SPIB gene_id:6689|Hs108|chr19 (177 aa)
initn: 1170 init1: 1138 opt: 1138 Z-score: 817.2 bits: 158.3 E(32554): 3.4e-39
Smith-Waterman score: 1138; 98.2% identity (99.4% similar) in 166 aa overlap (1-166:1-166)
10 20 30 40 50 60
pF1KB7 MLALEAAQLDGPHFSCLYPDGVFYDLDSCKHSSYPDSEGAPDSLWDWTVAPPVPATPYEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MLALEAAQLDGPHFSCLYPDGVFYDLDSCKHSSYPDSEGAPDSLWDWTVAPPVPATPYEA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 FDPAAAAFSHPQAAQLCYEPPTYSPAGNLELAPSLEAPGPGLPAYPTENFASQTLVPPAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 FDPAAAAFSHPQAAQLCYEPPTYSPAGNLELAPSLEAPGPGLPAYPTENFASQTLVPPAY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 APYPSPVLSEEEDLPLDSPALEVSDSESDEALVAGPEGKGSEAGTRKKLRLYQFLLGLLT
::::::::::::::::::::::::::::::::::::::::::. .:
CCDS59 APYPSPVLSEEEDLPLDSPALEVSDSESDEALVAGPEGKGSEGLARSCACTSSCWGY
130 140 150 160 170
190 200 210 220 230 240
pF1KB7 RGDMRECVWWVEPGAGVFQFSSKHKELLARRWGQQKGNRKRMTYQKLARALRNYAKTGEI
>>CCDS58674.1 SPIB gene_id:6689|Hs108|chr19 (171 aa)
initn: 991 init1: 991 opt: 994 Z-score: 717.0 bits: 139.7 E(32554): 1.3e-33
Smith-Waterman score: 994; 89.0% identity (93.0% similar) in 172 aa overlap (91-262:1-171)
70 80 90 100 110 120
pF1KB7 FDPAAAAFSHPQAAQLCYEPPTYSPAGNLELAPSLEAPGPGLPAYPTENFASQTLVPPAY
.: :. . ..:: . . :::::::
CCDS58 MASSMTWTAASIPATLIQR-GLLTLVPPAY
10 20
130 140 150 160 170 180
pF1KB7 APYPSPVLSEEEDLPLDSPALEVSDSESDEALVAGPEGKGSEAGTRKKLRLYQFLLGLLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 APYPSPVLSEEEDLPLDSPALEVSDSESDEALVAGPEGKGSEAGTRKKLRLYQFLLGLLT
30 40 50 60 70 80
190 200 210 220 230 240
pF1KB7 RGDMRECVWWVEPGAGVFQFSSKHKELLARRWGQQKGNRKRMTYQKLARALRNYAKTGEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 RGDMRECVWWVEPGAGVFQFSSKHKELLARRWGQQKGNRKRMTYQKLARALRNYAKTGEI
90 100 110 120 130 140
250 260
pF1KB7 RKVKRKLTYQFDSALLPAVRRA
::::::::::::::::::::::
CCDS58 RKVKRKLTYQFDSALLPAVRRA
150 160 170
>>CCDS7933.2 SPI1 gene_id:6688|Hs108|chr11 (270 aa)
initn: 530 init1: 480 opt: 617 Z-score: 451.4 bits: 91.2 E(32554): 8e-19
Smith-Waterman score: 617; 44.4% identity (63.4% similar) in 268 aa overlap (4-256:2-257)
10 20 30 40 50
pF1KB7 MLALEAAQLDGPHFSCLYP---DGVFYDLDSCK---HSSYP----DSEGAPDSLWDWTVA
:.: ...: : . : : : :: : . : :: :.:. : ::.
CCDS79 MLQACKMEG--FPLVPPPSEDLVPYDTDLYQRQTHEYYPYLSSDGESHSDHYWDFH--
10 20 30 40 50
60 70 80 90 100
pF1KB7 PPVPATPYEAFDPAAAAFSHPQAAQLCYEPPTYSPAG-NLELAPSLEAPGPGLPAYPTEN
: . .:.: : :.. :..: :: . ..:: : .: .:. .
CCDS79 PHHVHSEFESF--AENNFTELQSVQ----PPQLQQLYRHMELEQMHVLDTPMVPPHPSLG
60 70 80 90 100
110 120 130 140 150 160
pF1KB7 FASQTLVPPAYAPYPS--PVL--SEEEDLPLDSPALEVSDSESDEALVAGPEGKGSEAGT
. : : ::: :. :.::. .:: :::::.:.: .: :: .:.:.
CCDS79 HQVSYL-PRMCLQYPSLSPAQPSSDEEEGERQSPPLEVSDGEAD-GLEPGPGLLPGETGS
110 120 130 140 150 160
170 180 190 200 210 220
pF1KB7 RKKLRLYQFLLGLLTRGDMRECVWWVEPGAGVFQFSSKHKELLARRWGQQKGNRKRMTYQ
.::.::::::: :: :::.. .:::. :.::::::::: ::.::: ::::::.::::
CCDS79 KKKIRLYQFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYQ
170 180 190 200 210 220
230 240 250 260
pF1KB7 KLARALRNYAKTGEIRKVKRKLTYQFDSALLPAVRRA
:.:::::::.::::..:::.::::::.. .:
CCDS79 KMARALRNYGKTGEVKKVKKKLTYQFSGEVLGRGGLAERRHPPH
230 240 250 260 270
>>CCDS44591.1 SPI1 gene_id:6688|Hs108|chr11 (271 aa)
initn: 530 init1: 480 opt: 615 Z-score: 450.0 bits: 91.0 E(32554): 9.6e-19
Smith-Waterman score: 615; 44.2% identity (63.2% similar) in 269 aa overlap (4-256:2-258)
10 20 30 40
pF1KB7 MLALEAAQLDGPHFSCLYP----DGVFYDLDSCK---HSSYP----DSEGAPDSLWDWTV
:.: ...: : . : : : :: : . : :: :.:. : ::.
CCDS44 MLQACKMEG--FPLVPPQPSEDLVPYDTDLYQRQTHEYYPYLSSDGESHSDHYWDFH-
10 20 30 40 50
50 60 70 80 90 100
pF1KB7 APPVPATPYEAFDPAAAAFSHPQAAQLCYEPPTYSPAG-NLELAPSLEAPGPGLPAYPTE
: . .:.: : :.. :..: :: . ..:: : .: .:.
CCDS44 -PHHVHSEFESF--AENNFTELQSVQ----PPQLQQLYRHMELEQMHVLDTPMVPPHPSL
60 70 80 90 100
110 120 130 140 150 160
pF1KB7 NFASQTLVPPAYAPYPS--PVL--SEEEDLPLDSPALEVSDSESDEALVAGPEGKGSEAG
. . : : ::: :. :.::. .:: :::::.:.: .: :: .:.:
CCDS44 GHQVSYL-PRMCLQYPSLSPAQPSSDEEEGERQSPPLEVSDGEAD-GLEPGPGLLPGETG
110 120 130 140 150 160
170 180 190 200 210 220
pF1KB7 TRKKLRLYQFLLGLLTRGDMRECVWWVEPGAGVFQFSSKHKELLARRWGQQKGNRKRMTY
..::.::::::: :: :::.. .:::. :.::::::::: ::.::: ::::::.:::
CCDS44 SKKKIRLYQFLLDLLRSGDMKDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTY
170 180 190 200 210 220
230 240 250 260
pF1KB7 QKLARALRNYAKTGEIRKVKRKLTYQFDSALLPAVRRA
::.:::::::.::::..:::.::::::.. .:
CCDS44 QKMARALRNYGKTGEVKKVKKKLTYQFSGEVLGRGGLAERRHPPH
230 240 250 260 270
262 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 12:09:28 2016 done: Sun Nov 6 12:09:28 2016
Total Scan time: 2.630 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]