FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7520, 248 aa
  1>>>pF1KB7520 248 - 248 aa - 248 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5165+/-0.00091; mu= 13.3999+/- 0.054
 mean_var=66.2691+/-13.461, 0's: 0 Z-trim(105.2): 58  B-trim: 60 in 1/47
 Lambda= 0.157550
 statistics sampled from 8215 (8275) to 8215 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.64), E-opt: 0.2 (0.254), width:  16
 Scan time:  2.130

The best scores are:                                      opt bits E(32554)
CCDS9082.1 SPIC gene_id:121599|Hs108|chr12         ( 248) 1695 394.0 4.9e-110
CCDS7933.2 SPI1 gene_id:6688|Hs108|chr11           ( 270)  399 99.5 2.5e-21
CCDS44591.1 SPI1 gene_id:6688|Hs108|chr11          ( 271)  399 99.5 2.5e-21
CCDS58674.1 SPIB gene_id:6689|Hs108|chr19          ( 171)  378 94.6 4.6e-20
CCDS33080.1 SPIB gene_id:6689|Hs108|chr19          ( 262)  380 95.1 4.8e-20


>>CCDS9082.1 SPIC gene_id:121599|Hs108|chr12              (248 aa)
 initn: 1695 init1: 1695 opt: 1695  Z-score: 2089.0  bits: 394.0 E(32554): 4.9e-110
Smith-Waterman score: 1695; 100.0% identity (100.0% similar) in 248 aa overlap (1-248:1-248)

               10        20        30        40        50        60
pF1KB7 MTCVEQDKLGQAFEDAFEVLRQHSTGDLQYSPDYRNYLALINHRPHVKGNSSCYGVLPTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 MTCVEQDKLGQAFEDAFEVLRQHSTGDLQYSPDYRNYLALINHRPHVKGNSSCYGVLPTE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 EPVYNWRTVINSAADFYFEGNIHQSLQNITENQLVQPTLLQQKGGKGRKKLRLFEYLHES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 EPVYNWRTVINSAADFYFEGNIHQSLQNITENQLVQPTLLQQKGGKGRKKLRLFEYLHES
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 LYNPEMASCIQWVDKTKGIFQFVSKNKEKLAELWGKRKGNRKTMTYQKMARALRNYGRSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 LYNPEMASCIQWVDKTKGIFQFVSKNKEKLAELWGKRKGNRKTMTYQKMARALRNYGRSG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 EITKIRRKLTYQFSEAILQRLSPSYFLGKEIFYSQCVQPDQEYLSLNNWNANYNYTYANY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 EITKIRRKLTYQFSEAILQRLSPSYFLGKEIFYSQCVQPDQEYLSLNNWNANYNYTYANY
              190       200       210       220       230       240

               
pF1KB7 HELNHHDC
       ::::::::
CCDS90 HELNHHDC
               

>>CCDS7933.2 SPI1 gene_id:6688|Hs108|chr11                (270 aa)
 initn: 428 init1: 386 opt: 399  Z-score: 496.4  bits: 99.5 E(32554): 2.5e-21
Smith-Waterman score: 399; 57.7% identity (77.9% similar) in 104 aa overlap (97-200:157-259)

         70        80        90       100       110       120      
pF1KB7 RTVINSAADFYFEGNIHQSLQNITENQLVQPTLLQQKGGKGRKKLRLFEYLHESLYNPEM
                                     : ::  . :. .::.::...: . : . .:
CCDS79 AQPSSDEEEGERQSPPLEVSDGEADGLEPGPGLLPGETGS-KKKIRLYQFLLDLLRSGDM
        130       140       150       160        170       180     

        130       140       150       160       170       180      
pF1KB7 ASCIQWVDKTKGIFQFVSKNKEKLAELWGKRKGNRKTMTYQKMARALRNYGRSGEITKIR
        . : :::: :: ::: ::.:: ::. :: .::::: ::::::::::::::..::. :..
CCDS79 KDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYQKMARALRNYGKTGEVKKVK
         190       200       210       220       230       240     

        190       200       210       220       230       240      
pF1KB7 RKLTYQFSEAILQRLSPSYFLGKEIFYSQCVQPDQEYLSLNNWNANYNYTYANYHELNHH
       .:::::::  .: :                                              
CCDS79 KKLTYQFSGEVLGRGGLAERRHPPH                                   
         250       260       270                                   

>>CCDS44591.1 SPI1 gene_id:6688|Hs108|chr11               (271 aa)
 initn: 428 init1: 386 opt: 399  Z-score: 496.4  bits: 99.5 E(32554): 2.5e-21
Smith-Waterman score: 399; 57.7% identity (77.9% similar) in 104 aa overlap (97-200:158-260)

         70        80        90       100       110       120      
pF1KB7 RTVINSAADFYFEGNIHQSLQNITENQLVQPTLLQQKGGKGRKKLRLFEYLHESLYNPEM
                                     : ::  . :. .::.::...: . : . .:
CCDS44 AQPSSDEEEGERQSPPLEVSDGEADGLEPGPGLLPGETGS-KKKIRLYQFLLDLLRSGDM
       130       140       150       160        170       180      

        130       140       150       160       170       180      
pF1KB7 ASCIQWVDKTKGIFQFVSKNKEKLAELWGKRKGNRKTMTYQKMARALRNYGRSGEITKIR
        . : :::: :: ::: ::.:: ::. :: .::::: ::::::::::::::..::. :..
CCDS44 KDSIWWVDKDKGTFQFSSKHKEALAHRWGIQKGNRKKMTYQKMARALRNYGKTGEVKKVK
        190       200       210       220       230       240      

        190       200       210       220       230       240      
pF1KB7 RKLTYQFSEAILQRLSPSYFLGKEIFYSQCVQPDQEYLSLNNWNANYNYTYANYHELNHH
       .:::::::  .: :                                              
CCDS44 KKLTYQFSGEVLGRGGLAERRHPPH                                   
        250       260       270                                    

>>CCDS58674.1 SPIB gene_id:6689|Hs108|chr19               (171 aa)
 initn: 397 init1: 375 opt: 378  Z-score: 473.7  bits: 94.6 E(32554): 4.6e-20
Smith-Waterman score: 378; 43.5% identity (68.0% similar) in 147 aa overlap (55-198:20-165)

           30        40        50        60          70        80  
pF1KB7 TGDLQYSPDYRNYLALINHRPHVKGNSSCYGVLPTEEPVYNWRT--VINSAADFYFEGNI
                                     :.:    :.:      :..   :. ...  
CCDS58            MASSMTWTAASIPATLIQRGLLTLVPPAYAPYPSPVLSEEEDLPLDSPA
                          10        20        30        40         

             90        100       110       120       130       140 
pF1KB7 HQSLQNITENQLVQ-PTLLQQKGGKGRKKLRLFEYLHESLYNPEMASCIQWVDKTKGIFQ
        .  .. ... ::  :    ...:  ::::::...:   :   .:  :. ::.   :.::
CCDS58 LEVSDSESDEALVAGPEGKGSEAGT-RKKLRLYQFLLGLLTRGDMRECVWWVEPGAGVFQ
      50        60        70         80        90       100        

             150       160       170       180       190       200 
pF1KB7 FVSKNKEKLAELWGKRKGNRKTMTYQKMARALRNYGRSGEITKIRRKLTYQFSEAILQRL
       : ::.:: ::. ::..::::: :::::.:::::::...::: :..:::::::. :.:   
CCDS58 FSSKHKELLARRWGQQKGNRKRMTYQKLARALRNYAKTGEIRKVKRKLTYQFDSALLPAV
      110       120       130       140       150       160        

             210       220       230       240        
pF1KB7 SPSYFLGKEIFYSQCVQPDQEYLSLNNWNANYNYTYANYHELNHHDC
                                                      
CCDS58 RRA                                            
      170                                             

>>CCDS33080.1 SPIB gene_id:6689|Hs108|chr19               (262 aa)
 initn: 397 init1: 375 opt: 380  Z-score: 473.3  bits: 95.1 E(32554): 4.8e-20
Smith-Waterman score: 386; 36.0% identity (63.5% similar) in 200 aa overlap (11-198:59-256)

                                   10        20        30        40
pF1KB7                     MTCVEQDKLGQAFEDAFEVLRQHSTGDLQYSPDYRNYLAL
                                     .::. :  .. . ....: : :   .  . 
CCDS33 CKHSSYPDSEGAPDSLWDWTVAPPVPATPYEAFDPAAAAFSHPQAAQLCYEPPTYSPAGN
       30        40        50        60        70        80        

               50        60                  70        80        90
pF1KB7 INHRPHVKGNSSCYGVLPTEE--------PVYNWRT--VINSAADFYFEGNIHQSLQNIT
       ..  : ... .    . :::.        :.:      :..   :. ...   .  .. .
CCDS33 LELAPSLEAPGPGLPAYPTENFASQTLVPPAYAPYPSPVLSEEEDLPLDSPALEVSDSES
       90       100       110       120       130       140        

              100         110       120       130       140        
pF1KB7 ENQLVQPTLLQQKGGKG--RKKLRLFEYLHESLYNPEMASCIQWVDKTKGIFQFVSKNKE
       .. ::     . ::...  ::::::...:   :   .:  :. ::.   :.::: ::.::
CCDS33 DEALVAGP--EGKGSEAGTRKKLRLYQFLLGLLTRGDMRECVWWVEPGAGVFQFSSKHKE
      150         160       170       180       190       200      

      150       160       170       180       190       200        
pF1KB7 KLAELWGKRKGNRKTMTYQKMARALRNYGRSGEITKIRRKLTYQFSEAILQRLSPSYFLG
        ::. ::..::::: :::::.:::::::...::: :..:::::::. :.:          
CCDS33 LLARRWGQQKGNRKRMTYQKLARALRNYAKTGEIRKVKRKLTYQFDSALLPAVRRA    
        210       220       230       240       250       260      

      210       220       230       240        
pF1KB7 KEIFYSQCVQPDQEYLSLNNWNANYNYTYANYHELNHHDC




248 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 14:45:19 2016 done: Sun Nov  6 14:45:19 2016
 Total Scan time:  2.130 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]