Result of FASTA (omim) for
pFN21AB7517
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7517, 110 aa
1>>>pF1KB7517 110 - 110 aa - 110 aa
Library: /omim/omim.rfq.tfa
63214209 residues in 88908 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.5525+/-0.000391; mu= -8.7255+/- 0.025
mean_var=321.6052+/-62.379, 0's: 0 Z-trim(122.4): 37 B-trim: 101 in 1/56
Lambda= 0.071518
statistics sampled from 41178 (41245) to 41178 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.759), E-opt: 0.2 (0.464), width: 16
Scan time: 5.290
The best scores are: opt bits E(88908)
NP_002814 (OMIM: 188390) prothymosin alpha isoform ( 110) 703 84.3 4.5e-17
NP_001092755 (OMIM: 188390) prothymosin alpha isof ( 111) 691 83.1 1.1e-16
XP_011509823 (OMIM: 188390) PREDICTED: prothymosin ( 261) 626 76.8 2e-14
XP_011509821 (OMIM: 188390) PREDICTED: prothymosin ( 262) 623 76.4 2.5e-14
XP_011509822 (OMIM: 188390) PREDICTED: prothymosin ( 262) 614 75.5 4.7e-14
XP_011509820 (OMIM: 188390) PREDICTED: prothymosin ( 263) 611 75.2 5.9e-14
>>NP_002814 (OMIM: 188390) prothymosin alpha isoform 2 [ (110 aa)
initn: 703 init1: 703 opt: 703 Z-score: 427.8 bits: 84.3 E(88908): 4.5e-17
Smith-Waterman score: 703; 100.0% identity (100.0% similar) in 110 aa overlap (1-110:1-110)
10 20 30 40 50 60
pF1KB7 MSDAAVDTSSEITTKDLKEKKEVVEEAENGRDAPANGNANEENGEQEADNEVDEEEEEGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MSDAAVDTSSEITTKDLKEKKEVVEEAENGRDAPANGNANEENGEQEADNEVDEEEEEGG
10 20 30 40 50 60
70 80 90 100 110
pF1KB7 EEEEEEEEGDGEEEDGDEDEEAESATGKRAAEDDEDDDVDTKKQKTDEDD
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 EEEEEEEEGDGEEEDGDEDEEAESATGKRAAEDDEDDDVDTKKQKTDEDD
70 80 90 100 110
>>NP_001092755 (OMIM: 188390) prothymosin alpha isoform (111 aa)
initn: 465 init1: 465 opt: 691 Z-score: 421.1 bits: 83.1 E(88908): 1.1e-16
Smith-Waterman score: 691; 99.1% identity (99.1% similar) in 111 aa overlap (1-110:1-111)
10 20 30 40 50
pF1KB7 MSDAAVDTSSEITTKDLKEKKEVVEEAENGRDAPANGNA-NEENGEQEADNEVDEEEEEG
::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::
NP_001 MSDAAVDTSSEITTKDLKEKKEVVEEAENGRDAPANGNAENEENGEQEADNEVDEEEEEG
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 GEEEEEEEEGDGEEEDGDEDEEAESATGKRAAEDDEDDDVDTKKQKTDEDD
:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GEEEEEEEEGDGEEEDGDEDEEAESATGKRAAEDDEDDDVDTKKQKTDEDD
70 80 90 100 110
>>XP_011509823 (OMIM: 188390) PREDICTED: prothymosin alp (261 aa)
initn: 623 init1: 623 opt: 626 Z-score: 380.3 bits: 76.8 E(88908): 2e-14
Smith-Waterman score: 626; 92.4% identity (95.2% similar) in 105 aa overlap (6-110:157-261)
10 20 30
pF1KB7 MSDAAVDTSSEITTKDLKEKKEVVEEAENGRDAPA
.: . : .::::::::::::::::::::
XP_011 FPQARTPDLCWYWWPCRVEKVTGRPGPRCLLDPGRSPTPEDLKEKKEVVEEAENGRDAPA
130 140 150 160 170 180
40 50 60 70 80 90
pF1KB7 NGNANEENGEQEADNEVDEEEEEGGEEEEEEEEGDGEEEDGDEDEEAESATGKRAAEDDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NGNANEENGEQEADNEVDEEEEEGGEEEEEEEEGDGEEEDGDEDEEAESATGKRAAEDDE
190 200 210 220 230 240
100 110
pF1KB7 DDDVDTKKQKTDEDD
:::::::::::::::
XP_011 DDDVDTKKQKTDEDD
250 260
>>XP_011509821 (OMIM: 188390) PREDICTED: prothymosin alp (262 aa)
initn: 623 init1: 623 opt: 623 Z-score: 378.6 bits: 76.4 E(88908): 2.5e-14
Smith-Waterman score: 623; 99.0% identity (100.0% similar) in 97 aa overlap (14-110:166-262)
10 20 30 40
pF1KB7 MSDAAVDTSSEITTKDLKEKKEVVEEAENGRDAPANGNANEEN
:.::::::::::::::::::::::::::::
XP_011 AGRAGLRGPTGGPEPLAGQRPRGSRRPGRRTSDLKEKKEVVEEAENGRDAPANGNANEEN
140 150 160 170 180 190
50 60 70 80 90 100
pF1KB7 GEQEADNEVDEEEEEGGEEEEEEEEGDGEEEDGDEDEEAESATGKRAAEDDEDDDVDTKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GEQEADNEVDEEEEEGGEEEEEEEEGDGEEEDGDEDEEAESATGKRAAEDDEDDDVDTKK
200 210 220 230 240 250
110
pF1KB7 QKTDEDD
:::::::
XP_011 QKTDEDD
260
>>XP_011509822 (OMIM: 188390) PREDICTED: prothymosin alp (262 aa)
initn: 465 init1: 465 opt: 614 Z-score: 373.6 bits: 75.5 E(88908): 4.7e-14
Smith-Waterman score: 614; 91.5% identity (94.3% similar) in 106 aa overlap (6-110:157-262)
10 20 30
pF1KB7 MSDAAVDTSSEITTKDLKEKKEVVEEAENGRDAPA
.: . : .::::::::::::::::::::
XP_011 FPQARTPDLCWYWWPCRVEKVTGRPGPRCLLDPGRSPTPEDLKEKKEVVEEAENGRDAPA
130 140 150 160 170 180
40 50 60 70 80 90
pF1KB7 NGNA-NEENGEQEADNEVDEEEEEGGEEEEEEEEGDGEEEDGDEDEEAESATGKRAAEDD
:::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NGNAENEENGEQEADNEVDEEEEEGGEEEEEEEEGDGEEEDGDEDEEAESATGKRAAEDD
190 200 210 220 230 240
100 110
pF1KB7 EDDDVDTKKQKTDEDD
::::::::::::::::
XP_011 EDDDVDTKKQKTDEDD
250 260
>>XP_011509820 (OMIM: 188390) PREDICTED: prothymosin alp (263 aa)
initn: 465 init1: 465 opt: 611 Z-score: 371.9 bits: 75.2 E(88908): 5.9e-14
Smith-Waterman score: 611; 98.0% identity (99.0% similar) in 98 aa overlap (14-110:166-263)
10 20 30 40
pF1KB7 MSDAAVDTSSEITTKDLKEKKEVVEEAENGRDAPANGNA-NEE
:.:::::::::::::::::::::::: :::
XP_011 AGRAGLRGPTGGPEPLAGQRPRGSRRPGRRTSDLKEKKEVVEEAENGRDAPANGNAENEE
140 150 160 170 180 190
50 60 70 80 90 100
pF1KB7 NGEQEADNEVDEEEEEGGEEEEEEEEGDGEEEDGDEDEEAESATGKRAAEDDEDDDVDTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NGEQEADNEVDEEEEEGGEEEEEEEEGDGEEEDGDEDEEAESATGKRAAEDDEDDDVDTK
200 210 220 230 240 250
110
pF1KB7 KQKTDEDD
::::::::
XP_011 KQKTDEDD
260
110 residues in 1 query sequences
63214209 residues in 88908 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Sep 21 11:31:50 2017 done: Thu Sep 21 11:31:50 2017
Total Scan time: 5.290 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]