FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7517, 110 aa
  1>>>pF1KB7517     110 - 110 aa - 110 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.1872+/-0.00104; mu= -6.0830+/- 0.064
 mean_var=294.2462+/-58.545, 0's: 0 Z-trim(113.8): 27  B-trim: 173 in 1/53
 Lambda= 0.074769
 statistics sampled from 14409 (14427) to 14409 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.747), E-opt: 0.2 (0.443), width:  16
 Scan time:  1.710

The best scores are:                                      opt bits E(32554)
CCDS46541.1 PTMA gene_id:5757|Hs108|chr2           ( 110)  703 87.4 1.9e-18
CCDS42833.1 PTMA gene_id:5757|Hs108|chr2           ( 111)  691 86.1 4.8e-18


>>CCDS46541.1 PTMA gene_id:5757|Hs108|chr2                (110 aa)
 initn: 703 init1: 703 opt: 703  Z-score: 444.5  bits: 87.4 E(32554): 1.9e-18
Smith-Waterman score: 703; 100.0% identity (100.0% similar) in 110 aa overlap (1-110:1-110)

               10        20        30        40        50        60
pF1KB7 MSDAAVDTSSEITTKDLKEKKEVVEEAENGRDAPANGNANEENGEQEADNEVDEEEEEGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MSDAAVDTSSEITTKDLKEKKEVVEEAENGRDAPANGNANEENGEQEADNEVDEEEEEGG
               10        20        30        40        50        60

               70        80        90       100       110
pF1KB7 EEEEEEEEGDGEEEDGDEDEEAESATGKRAAEDDEDDDVDTKKQKTDEDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 EEEEEEEEGDGEEEDGDEDEEAESATGKRAAEDDEDDDVDTKKQKTDEDD
               70        80        90       100       110

>>CCDS42833.1 PTMA gene_id:5757|Hs108|chr2                (111 aa)
 initn: 465 init1: 465 opt: 691  Z-score: 437.5  bits: 86.1 E(32554): 4.8e-18
Smith-Waterman score: 691; 99.1% identity (99.1% similar) in 111 aa overlap (1-110:1-111)

               10        20        30         40        50         
pF1KB7 MSDAAVDTSSEITTKDLKEKKEVVEEAENGRDAPANGNA-NEENGEQEADNEVDEEEEEG
       ::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::
CCDS42 MSDAAVDTSSEITTKDLKEKKEVVEEAENGRDAPANGNAENEENGEQEADNEVDEEEEEG
               10        20        30        40        50        60

      60        70        80        90       100       110
pF1KB7 GEEEEEEEEGDGEEEDGDEDEEAESATGKRAAEDDEDDDVDTKKQKTDEDD
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 GEEEEEEEEGDGEEEDGDEDEEAESATGKRAAEDDEDDDVDTKKQKTDEDD
               70        80        90       100       110 




110 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Sep 21 11:31:49 2017 done: Thu Sep 21 11:31:49 2017
 Total Scan time:  1.710 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]