Result of FASTA (ccds) for
pFN21AB7504
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7504, 238 aa
1>>>pF1KB7504 238 - 238 aa - 238 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.7500+/-0.00074; mu= 5.3744+/- 0.045
mean_var=186.2576+/-38.809, 0's: 0 Z-trim(116.2): 75 B-trim: 0 in 0/53
Lambda= 0.093976
statistics sampled from 16679 (16754) to 16679 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.812), E-opt: 0.2 (0.515), width: 16
Scan time: 2.650
The best scores are: opt bits E(32554)
CCDS2428.1 FEV gene_id:54738|Hs108|chr2 ( 238) 1659 236.0 1.6e-62
CCDS59230.1 FLI1 gene_id:2313|Hs108|chr11 ( 259) 623 95.6 3.3e-20
CCDS59231.1 FLI1 gene_id:2313|Hs108|chr11 ( 386) 623 95.8 4.5e-20
CCDS53725.1 FLI1 gene_id:2313|Hs108|chr11 ( 419) 623 95.8 4.7e-20
CCDS44768.1 FLI1 gene_id:2313|Hs108|chr11 ( 452) 623 95.8 5e-20
CCDS58789.1 ERG gene_id:2078|Hs108|chr21 ( 363) 611 94.1 1.3e-19
CCDS46649.1 ERG gene_id:2078|Hs108|chr21 ( 387) 611 94.1 1.4e-19
CCDS82674.1 ERG gene_id:2078|Hs108|chr21 ( 455) 611 94.2 1.6e-19
CCDS13657.1 ERG gene_id:2078|Hs108|chr21 ( 462) 611 94.2 1.6e-19
CCDS13658.1 ERG gene_id:2078|Hs108|chr21 ( 479) 611 94.2 1.6e-19
CCDS46648.1 ERG gene_id:2078|Hs108|chr21 ( 486) 611 94.2 1.6e-19
CCDS12600.1 ERF gene_id:2077|Hs108|chr19 ( 548) 449 72.3 7.3e-13
CCDS53724.1 ETS1 gene_id:2113|Hs108|chr11 ( 225) 438 70.5 1.1e-12
CCDS81648.1 ETS1 gene_id:2113|Hs108|chr11 ( 354) 438 70.6 1.5e-12
CCDS8475.1 ETS1 gene_id:2113|Hs108|chr11 ( 441) 438 70.7 1.7e-12
CCDS44767.1 ETS1 gene_id:2113|Hs108|chr11 ( 485) 438 70.8 1.9e-12
CCDS13659.1 ETS2 gene_id:2114|Hs108|chr21 ( 469) 437 70.6 2e-12
CCDS1164.1 ETV3 gene_id:2117|Hs108|chr1 ( 143) 398 64.9 3.3e-11
CCDS13575.1 GABPA gene_id:2551|Hs108|chr21 ( 454) 406 66.4 3.6e-11
CCDS30893.1 ETV3L gene_id:440695|Hs108|chr1 ( 361) 398 65.2 6.5e-11
CCDS44250.1 ETV3 gene_id:2117|Hs108|chr1 ( 512) 398 65.4 8.4e-11
CCDS14283.1 ELK1 gene_id:2002|Hs108|chrX ( 428) 395 64.9 9.7e-11
>>CCDS2428.1 FEV gene_id:54738|Hs108|chr2 (238 aa)
initn: 1659 init1: 1659 opt: 1659 Z-score: 1235.8 bits: 236.0 E(32554): 1.6e-62
Smith-Waterman score: 1659; 100.0% identity (100.0% similar) in 238 aa overlap (1-238:1-238)
10 20 30 40 50 60
pF1KB7 MRQSGASQPLLINMYLPDPVGDGLFKDGKNPSWGPLSPAVQKGSGQIQLWQFLLELLADR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 MRQSGASQPLLINMYLPDPVGDGLFKDGKNPSWGPLSPAVQKGSGQIQLWQFLLELLADR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 ANAGCIAWEGGHGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMSKVHGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 ANAGCIAWEGGHGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMSKVHGK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 RYAYRFDFQGLAQACQPPPAHAHAAAAAAAAAAAAQDGALYKLPAGLAPLPFPGLSKLNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 RYAYRFDFQGLAQACQPPPAHAHAAAAAAAAAAAAQDGALYKLPAGLAPLPFPGLSKLNL
130 140 150 160 170 180
190 200 210 220 230
pF1KB7 MAASAGVAPAGFSYWPGPGPAATAAAATAALYPSPSLQPPPGPFGAVAAASHLGGHYH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 MAASAGVAPAGFSYWPGPGPAATAAAATAALYPSPSLQPPPGPFGAVAAASHLGGHYH
190 200 210 220 230
>>CCDS59230.1 FLI1 gene_id:2313|Hs108|chr11 (259 aa)
initn: 665 init1: 605 opt: 623 Z-score: 476.2 bits: 95.6 E(32554): 3.3e-20
Smith-Waterman score: 654; 51.2% identity (71.0% similar) in 207 aa overlap (34-237:74-259)
10 20 30 40 50 60
pF1KB7 SGASQPLLINMYLPDPVGDGLFKDGKNPSWGPLSPAVQK-GSGQIQLWQFLLELLADRAN
:: : . . :::::::::::::::.: ::
CCDS59 GLNKSPPLGGAQTISKNTEQRPQPDPYQILGPTSSRLANPGSGQIQLWQFLLELLSDSAN
50 60 70 80 90 100
70 80 90 100 110 120
pF1KB7 AGCIAWEGGHGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMSKVHGKRY
:.::.::: .::::.:::::::::::::::::::::::::::::::::::::.:::::::
CCDS59 ASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRY
110 120 130 140 150 160
130 140 150 160 170 180
pF1KB7 AYRFDFQGLAQACQPPPAHAHAAAAAAAAAAAAQDGALYKLPAGLAPLP--FPGLSKLNL
::.:::.:.::: :: :. ....:: :. .. .: .:.:.
CCDS59 AYKFDFHGIAQALQPHPT----------------ESSMYKYPSDISYMPSYHAHQQKVNF
170 180 190 200
190 200 210 220 230
pF1KB7 MAASAGVAPAGFSYWPGPGPAATAAAATAALYPSPSLQPPPGPFGAVAAASHLGGHYH
. . :. : . : . . .. :...::.:.. :. . ::::..:
CCDS59 VPPHPSSMPVTSSSFFG-AASQYWTSPTGGIYPNPNVPRHPNTH----VPSHLGSYY
210 220 230 240 250
>>CCDS59231.1 FLI1 gene_id:2313|Hs108|chr11 (386 aa)
initn: 629 init1: 605 opt: 623 Z-score: 473.9 bits: 95.8 E(32554): 4.5e-20
Smith-Waterman score: 654; 51.2% identity (71.0% similar) in 207 aa overlap (34-237:201-386)
10 20 30 40 50 60
pF1KB7 SGASQPLLINMYLPDPVGDGLFKDGKNPSWGPLSPAVQK-GSGQIQLWQFLLELLADRAN
:: : . . :::::::::::::::.: ::
CCDS59 GLNKSPPLGGAQTISKNTEQRPQPDPYQILGPTSSRLANPGSGQIQLWQFLLELLSDSAN
180 190 200 210 220 230
70 80 90 100 110 120
pF1KB7 AGCIAWEGGHGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMSKVHGKRY
:.::.::: .::::.:::::::::::::::::::::::::::::::::::::.:::::::
CCDS59 ASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRY
240 250 260 270 280 290
130 140 150 160 170 180
pF1KB7 AYRFDFQGLAQACQPPPAHAHAAAAAAAAAAAAQDGALYKLPAGLAPLP--FPGLSKLNL
::.:::.:.::: :: :. ....:: :. .. .: .:.:.
CCDS59 AYKFDFHGIAQALQPHPT----------------ESSMYKYPSDISYMPSYHAHQQKVNF
300 310 320 330
190 200 210 220 230
pF1KB7 MAASAGVAPAGFSYWPGPGPAATAAAATAALYPSPSLQPPPGPFGAVAAASHLGGHYH
. . :. : . : . . .. :...::.:.. :. . ::::..:
CCDS59 VPPHPSSMPVTSSSFFG-AASQYWTSPTGGIYPNPNVPRHPNTH----VPSHLGSYY
340 350 360 370 380
>>CCDS53725.1 FLI1 gene_id:2313|Hs108|chr11 (419 aa)
initn: 629 init1: 605 opt: 623 Z-score: 473.4 bits: 95.8 E(32554): 4.7e-20
Smith-Waterman score: 654; 51.2% identity (71.0% similar) in 207 aa overlap (34-237:234-419)
10 20 30 40 50 60
pF1KB7 SGASQPLLINMYLPDPVGDGLFKDGKNPSWGPLSPAVQK-GSGQIQLWQFLLELLADRAN
:: : . . :::::::::::::::.: ::
CCDS53 GLNKSPPLGGAQTISKNTEQRPQPDPYQILGPTSSRLANPGSGQIQLWQFLLELLSDSAN
210 220 230 240 250 260
70 80 90 100 110 120
pF1KB7 AGCIAWEGGHGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMSKVHGKRY
:.::.::: .::::.:::::::::::::::::::::::::::::::::::::.:::::::
CCDS53 ASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRY
270 280 290 300 310 320
130 140 150 160 170 180
pF1KB7 AYRFDFQGLAQACQPPPAHAHAAAAAAAAAAAAQDGALYKLPAGLAPLP--FPGLSKLNL
::.:::.:.::: :: :. ....:: :. .. .: .:.:.
CCDS53 AYKFDFHGIAQALQPHPT----------------ESSMYKYPSDISYMPSYHAHQQKVNF
330 340 350 360
190 200 210 220 230
pF1KB7 MAASAGVAPAGFSYWPGPGPAATAAAATAALYPSPSLQPPPGPFGAVAAASHLGGHYH
. . :. : . : . . .. :...::.:.. :. . ::::..:
CCDS53 VPPHPSSMPVTSSSFFG-AASQYWTSPTGGIYPNPNVPRHPNTH----VPSHLGSYY
370 380 390 400 410
>>CCDS44768.1 FLI1 gene_id:2313|Hs108|chr11 (452 aa)
initn: 629 init1: 605 opt: 623 Z-score: 473.0 bits: 95.8 E(32554): 5e-20
Smith-Waterman score: 654; 51.2% identity (71.0% similar) in 207 aa overlap (34-237:267-452)
10 20 30 40 50 60
pF1KB7 SGASQPLLINMYLPDPVGDGLFKDGKNPSWGPLSPAVQK-GSGQIQLWQFLLELLADRAN
:: : . . :::::::::::::::.: ::
CCDS44 GLNKSPPLGGAQTISKNTEQRPQPDPYQILGPTSSRLANPGSGQIQLWQFLLELLSDSAN
240 250 260 270 280 290
70 80 90 100 110 120
pF1KB7 AGCIAWEGGHGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMSKVHGKRY
:.::.::: .::::.:::::::::::::::::::::::::::::::::::::.:::::::
CCDS44 ASCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRY
300 310 320 330 340 350
130 140 150 160 170 180
pF1KB7 AYRFDFQGLAQACQPPPAHAHAAAAAAAAAAAAQDGALYKLPAGLAPLP--FPGLSKLNL
::.:::.:.::: :: :. ....:: :. .. .: .:.:.
CCDS44 AYKFDFHGIAQALQPHPT----------------ESSMYKYPSDISYMPSYHAHQQKVNF
360 370 380 390 400
190 200 210 220 230
pF1KB7 MAASAGVAPAGFSYWPGPGPAATAAAATAALYPSPSLQPPPGPFGAVAAASHLGGHYH
. . :. : . : . . .. :...::.:.. :. . ::::..:
CCDS44 VPPHPSSMPVTSSSFFG-AASQYWTSPTGGIYPNPNVPRHPNTH----VPSHLGSYY
410 420 430 440 450
>>CCDS58789.1 ERG gene_id:2078|Hs108|chr21 (363 aa)
initn: 637 init1: 596 opt: 611 Z-score: 465.5 bits: 94.1 E(32554): 1.3e-19
Smith-Waterman score: 640; 51.7% identity (68.7% similar) in 211 aa overlap (34-237:181-363)
10 20 30 40 50 60
pF1KB7 SGASQPLLINMYLPDPVGDGLFKDGKNPSWGPLSPAVQK-GSGQIQLWQFLLELLADRAN
:: : . . :::::::::::::::.: .:
CCDS58 TPQSKAAQPSPSTVPKTEDQRPQLDPYQILGPTSSRLANPGSGQIQLWQFLLELLSDSSN
160 170 180 190 200 210
70 80 90 100 110 120
pF1KB7 AGCIAWEGGHGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMSKVHGKRY
..::.::: .::::.:::::::::::::::::::::::::::::::::::::.:::::::
CCDS58 SSCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRY
220 230 240 250 260 270
130 140 150 160 170
pF1KB7 AYRFDFQGLAQACQPPPAHAHAAAAAAAAAAAAQDGALYKLPAGLAPLPFPGL-----SK
::.:::.:.::: :: : ...::: :. ::. : .:
CCDS58 AYKFDFHGIAQALQPHPP----------------ESSLYKYPSD---LPYMGSYHAHPQK
280 290 300 310
180 190 200 210 220 230
pF1KB7 LNLMAASAGVAPA-GFSYWPGPGPAATAAAATAALYPSPSLQPPPGPFGAVAAASHLGGH
.:..: . :. . :.. .:.: .. :...::. : : :::: .
CCDS58 MNFVAPHPPALPVTSSSFFAAPNPYWNSP--TGGIYPNTRLPTSHMP-------SHLGTY
320 330 340 350 360
pF1KB7 YH
:
CCDS58 Y
>>CCDS46649.1 ERG gene_id:2078|Hs108|chr21 (387 aa)
initn: 618 init1: 596 opt: 611 Z-score: 465.1 bits: 94.1 E(32554): 1.4e-19
Smith-Waterman score: 640; 51.7% identity (68.7% similar) in 211 aa overlap (34-237:205-387)
10 20 30 40 50 60
pF1KB7 SGASQPLLINMYLPDPVGDGLFKDGKNPSWGPLSPAVQK-GSGQIQLWQFLLELLADRAN
:: : . . :::::::::::::::.: .:
CCDS46 TPQSKAAQPSPSTVPKTEDQRPQLDPYQILGPTSSRLANPGSGQIQLWQFLLELLSDSSN
180 190 200 210 220 230
70 80 90 100 110 120
pF1KB7 AGCIAWEGGHGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMSKVHGKRY
..::.::: .::::.:::::::::::::::::::::::::::::::::::::.:::::::
CCDS46 SSCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRY
240 250 260 270 280 290
130 140 150 160 170
pF1KB7 AYRFDFQGLAQACQPPPAHAHAAAAAAAAAAAAQDGALYKLPAGLAPLPFPGL-----SK
::.:::.:.::: :: : ...::: :. ::. : .:
CCDS46 AYKFDFHGIAQALQPHPP----------------ESSLYKYPSD---LPYMGSYHAHPQK
300 310 320 330
180 190 200 210 220 230
pF1KB7 LNLMAASAGVAPA-GFSYWPGPGPAATAAAATAALYPSPSLQPPPGPFGAVAAASHLGGH
.:..: . :. . :.. .:.: .. :...::. : : :::: .
CCDS46 MNFVAPHPPALPVTSSSFFAAPNPYWNSP--TGGIYPNTRLPTSHMP-------SHLGTY
340 350 360 370 380
pF1KB7 YH
:
CCDS46 Y
>>CCDS82674.1 ERG gene_id:2078|Hs108|chr21 (455 aa)
initn: 618 init1: 596 opt: 611 Z-score: 464.2 bits: 94.2 E(32554): 1.6e-19
Smith-Waterman score: 640; 51.7% identity (68.7% similar) in 211 aa overlap (34-237:273-455)
10 20 30 40 50 60
pF1KB7 SGASQPLLINMYLPDPVGDGLFKDGKNPSWGPLSPAVQK-GSGQIQLWQFLLELLADRAN
:: : . . :::::::::::::::.: .:
CCDS82 TPQSKAAQPSPSTVPKTEDQRPQLDPYQILGPTSSRLANPGSGQIQLWQFLLELLSDSSN
250 260 270 280 290 300
70 80 90 100 110 120
pF1KB7 AGCIAWEGGHGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMSKVHGKRY
..::.::: .::::.:::::::::::::::::::::::::::::::::::::.:::::::
CCDS82 SSCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRY
310 320 330 340 350 360
130 140 150 160 170
pF1KB7 AYRFDFQGLAQACQPPPAHAHAAAAAAAAAAAAQDGALYKLPAGLAPLPFPGL-----SK
::.:::.:.::: :: : ...::: :. ::. : .:
CCDS82 AYKFDFHGIAQALQPHPP----------------ESSLYKYPSD---LPYMGSYHAHPQK
370 380 390 400
180 190 200 210 220 230
pF1KB7 LNLMAASAGVAPA-GFSYWPGPGPAATAAAATAALYPSPSLQPPPGPFGAVAAASHLGGH
.:..: . :. . :.. .:.: .. :...::. : : :::: .
CCDS82 MNFVAPHPPALPVTSSSFFAAPNPYWNSP--TGGIYPNTRLPTSHMP-------SHLGTY
410 420 430 440 450
pF1KB7 YH
:
CCDS82 Y
>>CCDS13657.1 ERG gene_id:2078|Hs108|chr21 (462 aa)
initn: 618 init1: 596 opt: 611 Z-score: 464.1 bits: 94.2 E(32554): 1.6e-19
Smith-Waterman score: 640; 51.7% identity (68.7% similar) in 211 aa overlap (34-237:280-462)
10 20 30 40 50 60
pF1KB7 SGASQPLLINMYLPDPVGDGLFKDGKNPSWGPLSPAVQK-GSGQIQLWQFLLELLADRAN
:: : . . :::::::::::::::.: .:
CCDS13 TPQSKAAQPSPSTVPKTEDQRPQLDPYQILGPTSSRLANPGSGQIQLWQFLLELLSDSSN
250 260 270 280 290 300
70 80 90 100 110 120
pF1KB7 AGCIAWEGGHGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMSKVHGKRY
..::.::: .::::.:::::::::::::::::::::::::::::::::::::.:::::::
CCDS13 SSCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRY
310 320 330 340 350 360
130 140 150 160 170
pF1KB7 AYRFDFQGLAQACQPPPAHAHAAAAAAAAAAAAQDGALYKLPAGLAPLPFPGL-----SK
::.:::.:.::: :: : ...::: :. ::. : .:
CCDS13 AYKFDFHGIAQALQPHPP----------------ESSLYKYPSD---LPYMGSYHAHPQK
370 380 390 400 410
180 190 200 210 220 230
pF1KB7 LNLMAASAGVAPA-GFSYWPGPGPAATAAAATAALYPSPSLQPPPGPFGAVAAASHLGGH
.:..: . :. . :.. .:.: .. :...::. : : :::: .
CCDS13 MNFVAPHPPALPVTSSSFFAAPNPYWNSP--TGGIYPNTRLPTSHMP-------SHLGTY
420 430 440 450 460
pF1KB7 YH
:
CCDS13 Y
>>CCDS13658.1 ERG gene_id:2078|Hs108|chr21 (479 aa)
initn: 618 init1: 596 opt: 611 Z-score: 463.9 bits: 94.2 E(32554): 1.6e-19
Smith-Waterman score: 640; 51.7% identity (68.7% similar) in 211 aa overlap (34-237:297-479)
10 20 30 40 50 60
pF1KB7 SGASQPLLINMYLPDPVGDGLFKDGKNPSWGPLSPAVQK-GSGQIQLWQFLLELLADRAN
:: : . . :::::::::::::::.: .:
CCDS13 TPQSKAAQPSPSTVPKTEDQRPQLDPYQILGPTSSRLANPGSGQIQLWQFLLELLSDSSN
270 280 290 300 310 320
70 80 90 100 110 120
pF1KB7 AGCIAWEGGHGEFKLTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMSKVHGKRY
..::.::: .::::.:::::::::::::::::::::::::::::::::::::.:::::::
CCDS13 SSCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRY
330 340 350 360 370 380
130 140 150 160 170
pF1KB7 AYRFDFQGLAQACQPPPAHAHAAAAAAAAAAAAQDGALYKLPAGLAPLPFPGL-----SK
::.:::.:.::: :: : ...::: :. ::. : .:
CCDS13 AYKFDFHGIAQALQPHPP----------------ESSLYKYPSD---LPYMGSYHAHPQK
390 400 410 420
180 190 200 210 220 230
pF1KB7 LNLMAASAGVAPA-GFSYWPGPGPAATAAAATAALYPSPSLQPPPGPFGAVAAASHLGGH
.:..: . :. . :.. .:.: .. :...::. : : :::: .
CCDS13 MNFVAPHPPALPVTSSSFFAAPNPYWNSP--TGGIYPNTRLPTSHMP-------SHLGTY
430 440 450 460 470
pF1KB7 YH
:
CCDS13 Y
238 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 00:37:24 2016 done: Mon Nov 7 00:37:24 2016
Total Scan time: 2.650 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]