FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7182, 184 aa
  1>>>pF1KB7182 184 - 184 aa - 184 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.2033+/-0.000246; mu= 7.4139+/- 0.016
 mean_var=164.0397+/-33.762, 0's: 0 Z-trim(125.9): 2  B-trim: 836 in 1/60
 Lambda= 0.100138
 statistics sampled from 50734 (50738) to 50734 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.864), E-opt: 0.2 (0.595), width:  16
 Scan time:  7.430

The best scores are:                                      opt bits E(85289)
NP_443177 (OMIM: 240500,606269,613494) tumor necro ( 184) 1264 192.7 2.8e-49


>>NP_443177 (OMIM: 240500,606269,613494) tumor necrosis   (184 aa)
 initn: 1264 init1: 1264 opt: 1264  Z-score: 1005.8  bits: 192.7 E(85289): 2.8e-49
Smith-Waterman score: 1264; 100.0% identity (100.0% similar) in 184 aa overlap (1-184:1-184)

               10        20        30        40        50        60
pF1KB7 MRRGPRSLRGRDAPAPTPCVPAECFDLLVRHCVACGLLRTPRPKPAGASSPAPRTALQPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_443 MRRGPRSLRGRDAPAPTPCVPAECFDLLVRHCVACGLLRTPRPKPAGASSPAPRTALQPQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 ESVGAGAGEAALPLPGLLFGAPALLGLALVLALVLVGLVSWRRRQRRLRGASSAEAPDGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_443 ESVGAGAGEAALPLPGLLFGAPALLGLALVLALVLVGLVSWRRRQRRLRGASSAEAPDGD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 KDAPEPLDKVIILSPGISDATAPAWPPPGEDPGTTPPGHSVPVPATELGSTELVTTKTAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_443 KDAPEPLDKVIILSPGISDATAPAWPPPGEDPGTTPPGHSVPVPATELGSTELVTTKTAG
              130       140       150       160       170       180

           
pF1KB7 PEQQ
       ::::
NP_443 PEQQ
           




184 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 04:50:06 2016 done: Mon Nov  7 04:50:08 2016
 Total Scan time:  7.430 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]