FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7044, 472 aa
  1>>>pF1KB7044 472 - 472 aa - 472 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.4354+/-0.000874; mu= 2.5337+/- 0.053
 mean_var=280.5525+/-56.276, 0's: 0 Z-trim(116.5): 12  B-trim: 0 in 0/55
 Lambda= 0.076572
 statistics sampled from 17104 (17115) to 17104 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.803), E-opt: 0.2 (0.526), width:  16
 Scan time:  3.530

The best scores are:                                      opt bits E(32554)
CCDS6443.1 DMRT3 gene_id:58524|Hs108|chr9          ( 472) 3218 368.3 9.7e-102


>>CCDS6443.1 DMRT3 gene_id:58524|Hs108|chr9               (472 aa)
 initn: 3218 init1: 3218 opt: 3218  Z-score: 1940.0  bits: 368.3 E(32554): 9.7e-102
Smith-Waterman score: 3218; 100.0% identity (100.0% similar) in 472 aa overlap (1-472:1-472)

               10        20        30        40        50        60
pF1KB7 MNGYGSPYLYMGGPVSQPPRAPLQRTPKCARCRNHGVLSWLKGHKRYCRFKDCTCEKCIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 MNGYGSPYLYMGGPVSQPPRAPLQRTPKCARCRNHGVLSWLKGHKRYCRFKDCTCEKCIL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 IIERQRVMAAQVALRRQQANESLESLIPDSLRALPGPPPPGDAVAAPQPPPASQPSQPQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 IIERQRVMAAQVALRRQQANESLESLIPDSLRALPGPPPPGDAVAAPQPPPASQPSQPQP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 PRPAAELAAAAALRWTAEPQPGALQAQLAKPDLTEERLGDGKSADNTEVFSDKDTDQRSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 PRPAAELAAAAALRWTAEPQPGALQAQLAKPDLTEERLGDGKSADNTEVFSDKDTDQRSS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 PDVAKSKGCFTPESPEIVSVEEGGYAVQKNGGNPESRPDSPKCHAEQNHLLIEGPSGTVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 PDVAKSKGCFTPESPEIVSVEEGGYAVQKNGGNPESRPDSPKCHAEQNHLLIEGPSGTVS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 LPFSLKANRPPLEVLKKIFPNQKPTVLELILKGCGGDLVSAVEVLLSSRSSVTGAERTSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 LPFSLKANRPPLEVLKKIFPNQKPTVLELILKGCGGDLVSAVEVLLSSRSSVTGAERTSA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 EPESLALPSNGHIFEHTLSSYPISSSKWSVGSAFRVPDTLRFSADSSNVVPSPLAGPLQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 EPESLALPSNGHIFEHTLSSYPISSSKWSVGSAFRVPDTLRFSADSSNVVPSPLAGPLQP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 PFPQPPRYPLMLRNTLARSQSSPFLPNDVTLWNTMTLQQQYQLRSQYVSPFPSNSTSVFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 PFPQPPRYPLMLRNTLARSQSSPFLPNDVTLWNTMTLQQQYQLRSQYVSPFPSNSTSVFR
              370       380       390       400       410       420

              430       440       450       460       470  
pF1KB7 SSPVLPARATEDPRISIPDDGCPFVSKQSIYTEDDYDERSDSSDSRTLNTSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 SSPVLPARATEDPRISIPDDGCPFVSKQSIYTEDDYDERSDSSDSRTLNTSS
              430       440       450       460       470  




472 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 04:17:40 2016 done: Tue Nov  8 04:17:40 2016
 Total Scan time:  3.530 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]