Result of FASTA (omim) for
pFN21AB6995
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6995, 222 aa
1>>>pF1KB6995 222 - 222 aa - 222 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.0846+/-0.0003; mu= 10.8048+/- 0.019
mean_var=98.9646+/-19.474, 0's: 0 Z-trim(119.4): 97 B-trim: 0 in 0/53
Lambda= 0.128924
statistics sampled from 33263 (33401) to 33263 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.757), E-opt: 0.2 (0.392), width: 16
Scan time: 5.170
The best scores are: opt bits E(85289)
NP_002719 (OMIM: 605601) bone marrow proteoglycan ( 222) 1574 302.4 3.9e-82
NP_001289855 (OMIM: 605601) bone marrow proteoglyc ( 222) 1574 302.4 3.9e-82
NP_001289856 (OMIM: 605601) bone marrow proteoglyc ( 222) 1574 302.4 3.9e-82
NP_001230174 (OMIM: 605601) bone marrow proteoglyc ( 211) 802 158.8 6.3e-39
NP_006084 (OMIM: 606814) proteoglycan 3 precursor ( 225) 743 147.9 1.3e-35
NP_006498 (OMIM: 167771) lithostathine-1-beta prec ( 166) 184 43.8 0.00021
NP_002900 (OMIM: 167770) lithostathine-1-alpha pre ( 166) 176 42.3 0.00058
NP_002340 (OMIM: 604524) lymphocyte antigen 75 pre (1722) 184 44.5 0.0013
NP_001152824 (OMIM: 609846) regenerating islet-der ( 158) 169 41.0 0.0014
NP_114433 (OMIM: 609846) regenerating islet-derive ( 158) 169 41.0 0.0014
NP_002429 (OMIM: 153618) macrophage mannose recept (1456) 182 44.1 0.0015
XP_011523845 (OMIM: 612264) PREDICTED: C-type mann (1156) 173 42.3 0.0039
NP_001193948 (OMIM: 151445) low affinity immunoglo ( 320) 165 40.5 0.004
XP_005272519 (OMIM: 151445) PREDICTED: low affinit ( 321) 165 40.5 0.004
NP_001993 (OMIM: 151445) low affinity immunoglobul ( 321) 165 40.5 0.004
NP_001207429 (OMIM: 151445) low affinity immunoglo ( 321) 165 40.5 0.004
NP_006030 (OMIM: 612264) C-type mannose receptor 2 (1479) 173 42.4 0.0048
>>NP_002719 (OMIM: 605601) bone marrow proteoglycan isof (222 aa)
initn: 1574 init1: 1574 opt: 1574 Z-score: 1595.6 bits: 302.4 E(85289): 3.9e-82
Smith-Waterman score: 1574; 99.5% identity (100.0% similar) in 222 aa overlap (1-222:1-222)
10 20 30 40 50 60
pF1KB6 MKLPLLLALLFGAVSALHLRSETSTFETPLGAKTLPEDEETPEQEMEETPCRELEEEEEW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MKLPLLLALLFGAVSALHLRSETSTFETPLGAKTLPEDEETPEQEMEETPCRELEEEEEW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 GSGSEDASKKDGAVESISVPDMVDKNLTCPEEEDTVKVVGIPGCQTCRYLLVRSLQTFSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 GSGSEDASKKDGAVESISVPDMVDKNLTCPEEEDTVKVVGIPGCQTCRYLLVRSLQTFSQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 AWFTCRRCYRGNLVSIHNFNINYRIQCSVSALNQGQVWIGGRITGSGRCRRFQWVDGSRW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 AWFTCRRCYRGNLVSIHNFNINYRIQCSVSALNQGQVWIGGRITGSGRCRRFQWVDGSRW
130 140 150 160 170 180
190 200 210 220
pF1KB6 NFAYWAAHQPWSRGGHCVALCTRGGYWRRAHCLRRLPFICSY
:::::::::::::::::::::::::.::::::::::::::::
NP_002 NFAYWAAHQPWSRGGHCVALCTRGGHWRRAHCLRRLPFICSY
190 200 210 220
>>NP_001289855 (OMIM: 605601) bone marrow proteoglycan i (222 aa)
initn: 1574 init1: 1574 opt: 1574 Z-score: 1595.6 bits: 302.4 E(85289): 3.9e-82
Smith-Waterman score: 1574; 99.5% identity (100.0% similar) in 222 aa overlap (1-222:1-222)
10 20 30 40 50 60
pF1KB6 MKLPLLLALLFGAVSALHLRSETSTFETPLGAKTLPEDEETPEQEMEETPCRELEEEEEW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKLPLLLALLFGAVSALHLRSETSTFETPLGAKTLPEDEETPEQEMEETPCRELEEEEEW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 GSGSEDASKKDGAVESISVPDMVDKNLTCPEEEDTVKVVGIPGCQTCRYLLVRSLQTFSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSGSEDASKKDGAVESISVPDMVDKNLTCPEEEDTVKVVGIPGCQTCRYLLVRSLQTFSQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 AWFTCRRCYRGNLVSIHNFNINYRIQCSVSALNQGQVWIGGRITGSGRCRRFQWVDGSRW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AWFTCRRCYRGNLVSIHNFNINYRIQCSVSALNQGQVWIGGRITGSGRCRRFQWVDGSRW
130 140 150 160 170 180
190 200 210 220
pF1KB6 NFAYWAAHQPWSRGGHCVALCTRGGYWRRAHCLRRLPFICSY
:::::::::::::::::::::::::.::::::::::::::::
NP_001 NFAYWAAHQPWSRGGHCVALCTRGGHWRRAHCLRRLPFICSY
190 200 210 220
>>NP_001289856 (OMIM: 605601) bone marrow proteoglycan i (222 aa)
initn: 1574 init1: 1574 opt: 1574 Z-score: 1595.6 bits: 302.4 E(85289): 3.9e-82
Smith-Waterman score: 1574; 99.5% identity (100.0% similar) in 222 aa overlap (1-222:1-222)
10 20 30 40 50 60
pF1KB6 MKLPLLLALLFGAVSALHLRSETSTFETPLGAKTLPEDEETPEQEMEETPCRELEEEEEW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKLPLLLALLFGAVSALHLRSETSTFETPLGAKTLPEDEETPEQEMEETPCRELEEEEEW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 GSGSEDASKKDGAVESISVPDMVDKNLTCPEEEDTVKVVGIPGCQTCRYLLVRSLQTFSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSGSEDASKKDGAVESISVPDMVDKNLTCPEEEDTVKVVGIPGCQTCRYLLVRSLQTFSQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 AWFTCRRCYRGNLVSIHNFNINYRIQCSVSALNQGQVWIGGRITGSGRCRRFQWVDGSRW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AWFTCRRCYRGNLVSIHNFNINYRIQCSVSALNQGQVWIGGRITGSGRCRRFQWVDGSRW
130 140 150 160 170 180
190 200 210 220
pF1KB6 NFAYWAAHQPWSRGGHCVALCTRGGYWRRAHCLRRLPFICSY
:::::::::::::::::::::::::.::::::::::::::::
NP_001 NFAYWAAHQPWSRGGHCVALCTRGGHWRRAHCLRRLPFICSY
190 200 210 220
>>NP_001230174 (OMIM: 605601) bone marrow proteoglycan i (211 aa)
initn: 770 init1: 770 opt: 802 Z-score: 819.9 bits: 158.8 E(85289): 6.3e-39
Smith-Waterman score: 1468; 94.6% identity (95.0% similar) in 222 aa overlap (1-222:1-211)
10 20 30 40 50 60
pF1KB6 MKLPLLLALLFGAVSALHLRSETSTFETPLGAKTLPEDEETPEQEMEETPCRELEEEEEW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKLPLLLALLFGAVSALHLRSETSTFETPLGAKTLPEDEETPEQEMEETPCRELEEEEEW
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 GSGSEDASKKDGAVESISVPDMVDKNLTCPEEEDTVKVVGIPGCQTCRYLLVRSLQTFSQ
:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSGSEDASKKDGAVESISVPDMVDKNLTCPEEEDTVKVVGIPGCQTCRYLL---------
70 80 90 100 110
130 140 150 160 170 180
pF1KB6 AWFTCRRCYRGNLVSIHNFNINYRIQCSVSALNQGQVWIGGRITGSGRCRRFQWVDGSRW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 --FTCRRCYRGNLVSIHNFNINYRIQCSVSALNQGQVWIGGRITGSGRCRRFQWVDGSRW
120 130 140 150 160
190 200 210 220
pF1KB6 NFAYWAAHQPWSRGGHCVALCTRGGYWRRAHCLRRLPFICSY
:::::::::::::::::::::::::.::::::::::::::::
NP_001 NFAYWAAHQPWSRGGHCVALCTRGGHWRRAHCLRRLPFICSY
170 180 190 200 210
>>NP_006084 (OMIM: 606814) proteoglycan 3 precursor [Hom (225 aa)
initn: 763 init1: 657 opt: 743 Z-score: 760.2 bits: 147.9 E(85289): 1.3e-35
Smith-Waterman score: 743; 50.2% identity (72.7% similar) in 227 aa overlap (1-222:1-225)
10 20 30 40 50
pF1KB6 MKLPLLLA-LLFGAVSALHLRSETSTFETPLGAKTLPED-EETPEQEMEETPCREL---E
:. ::: ::.:.::::::.... .:. : .: . . ::: . . .:. :
NP_006 MQCLLLLPFLLLGTVSALHLENDAPHLESLETQADLGQDLDSSKEQERDLALTEEVIQAE
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 EEEEWGSGSEDASKKDGAVESISVPDMVDKNLTCPEEEDTVKVVGIPGCQTCRYLLVRSL
:: .:. .: . . :.:: : .::.. ::.::: :.: : : :. :::::::.
NP_006 GEEVKASACQDNFEDEEAMESD--PAALDKDFQCPREEDIVEVQGSPRCKICRYLLVRTP
70 80 90 100 110
120 130 140 150 160 170
pF1KB6 QTFSQAWFTCRRCYRGNLVSIHNFNINYRIQCSVSALNQGQVWIGGRITGSGRCRRFQWV
.::..: .: ::: :::::::.::.:::::: .:..::.:::::: . : .:: :.
NP_006 KTFAEAQNVCSRCYGGNLVSIHDFNFNYRIQCCTSTVNQAQVWIGGNLRGWFLWKRFCWT
120 130 140 150 160 170
180 190 200 210 220
pF1KB6 DGSRWNFAYWAAHQPWSRGGHCVALCTRGGYWRRAHCLRRLPFICSY
:::.::::::. :: . : ::::::.:::::::.: ..:::.::.
NP_006 DGSHWNFAYWSPGQPGNGQGSCVALCTKGGYWRRAQCDKQLPFVCSF
180 190 200 210 220
>>NP_006498 (OMIM: 167771) lithostathine-1-beta precurso (166 aa)
initn: 91 init1: 43 opt: 184 Z-score: 200.1 bits: 43.8 E(85289): 0.00021
Smith-Waterman score: 184; 23.3% identity (56.7% similar) in 150 aa overlap (78-222:25-164)
50 60 70 80 90 100
pF1KB6 ETPCRELEEEEEWGSGSEDASKKDGAVESISVPDMVDKNLTCPEEEDTVKVVGIPGCQTC
: .. . ..::: .. . . :
NP_006 MAQTNSFFMLISSLMFLSLSQGQESQTELPNPRISCPEGTNAYR-------SYC
10 20 30 40
110 120 130 140 150 160
pF1KB6 RYLLVRSLQTFSQAWFTCRRCYRGNLVSIHNFNINYRIQCSV--SALNQGQVWIGGRITG
: . .. .:. .: . :. :::::. . . . . :. ....:::: .
NP_006 -YYFNEDPETWVDADLYCQNMNSGNLVSVLTQAEGAFVASLIKESSTDDSNVWIG--LHD
50 60 70 80 90 100
170 180 190 200 210 220
pF1KB6 SGRCRRFQWVDGSRWNFAYWAAHQPWS-RGGHCVALCTRGGY--WRRAHCLRRLPFICSY
. ::..: .:: .. : . .: : .:.:..: . .:. :. : ... :.:..
NP_006 PKKNRRWHWSSGSLVSYKSWDTGSPSSANAGYCASLTSCSGFKKWKDESCEKKFSFVCKF
110 120 130 140 150 160
NP_006 KN
>>NP_002900 (OMIM: 167770) lithostathine-1-alpha precurs (166 aa)
initn: 83 init1: 43 opt: 176 Z-score: 192.1 bits: 42.3 E(85289): 0.00058
Smith-Waterman score: 177; 23.8% identity (54.4% similar) in 160 aa overlap (68-222:18-164)
40 50 60 70 80 90
pF1KB6 DEETPEQEMEETPCRELEEEEEWGSGSEDASKKDGAVESISVPDMVDKNLTCPEEEDTVK
:...: . .:. ..::: .. .
NP_002 MAQTSSYFMLISCLMFLSQSQGQEAQTELPQA---RISCPEGTNAYR
10 20 30 40
100 110 120 130 140 150
pF1KB6 VVGIPGCQTCRYLLVRSLQTFSQAWFTCRRCYRGNLVSIHNFNINYRIQCSV--SALNQG
. : :. .. .:. .: . :. :::::. . . . . :. ..
NP_002 -------SYCYYF-NEDRETWVDADLYCQNMNSGNLVSVLTQAEGAFVASLIKESGTDDF
50 60 70 80 90
160 170 180 190 200 210
pF1KB6 QVWIGGRITGSGRCRRFQWVDGSRWNFAYWAAHQPWSRG-GHCVALCTRGGY--WRRAHC
.:::: . . ::..: .:: .. :. : : . :.::.: . :. :. . :
NP_002 NVWIG--LHDPKKNRRWHWSSGSLVSYKSWGIGAPSSVNPGYCVSLTSSTGFQKWKDVPC
100 110 120 130 140 150
220
pF1KB6 LRRLPFICSY
.. :.:..
NP_002 EDKFSFVCKFKN
160
>>NP_002340 (OMIM: 604524) lymphocyte antigen 75 precurs (1722 aa)
initn: 159 init1: 77 opt: 184 Z-score: 185.8 bits: 44.5 E(85289): 0.0013
Smith-Waterman score: 184; 26.0% identity (57.5% similar) in 127 aa overlap (101-220:366-485)
80 90 100 110 120 130
pF1KB6 DGAVESISVPDMVDKNLTCPEEEDTVKVVGIPGCQTCRYLLVRSLQTFSQAWFTCRRCYR
.:. : :::: .....: :. .
NP_002 LPYVCRKPLNNTVELTDVWTYSDTRCDAGWLPNNGFC-YLLVNESNSWDKAHAKCK-AFS
340 350 360 370 380 390
140 150 160 170 180
pF1KB6 GNLVSIHNFNINYRIQCSVSALN----QGQVWIGGRITGSGRCRRFQWVDGSRWNFAYWA
..:.:::.. .. :. :. . .:::: . . ::: ::.. ...::
NP_002 SDLISIHSLA---DVEVVVTKLHNEDIKEEVWIGLKNINIPTL--FQWSDGTEVTLTYWD
400 410 420 430 440
190 200 210 220
pF1KB6 AHQP---WSRGGHCVALCTRGGYWRRAHCLRRLPFICSY
..: ... .::. . : :. : ..: ..:
NP_002 ENEPNVPYNKTPNCVSYLGELGQWKVQSCEEKLKYVCKRKGEKLNDASSDKMCPPDEGWK
450 460 470 480 490 500
NP_002 RHGETCYKIYEDEVPFGTNCNLTITSRFEQEYLNDLMKKYDKSLRKYFWTGLRDVDSCGE
510 520 530 540 550 560
>>NP_001152824 (OMIM: 609846) regenerating islet-derived (158 aa)
initn: 102 init1: 55 opt: 169 Z-score: 185.4 bits: 41.0 E(85289): 0.0014
Smith-Waterman score: 169; 27.0% identity (59.8% similar) in 122 aa overlap (107-222:41-156)
80 90 100 110 120 130
pF1KB6 ISVPDMVDKNLTCPEEEDTVKVVGIPGCQTCRYLLVRSLQTFSQAWFTCRRCYRG-NLVS
: : :.:...:.: . :. : .:.:
NP_001 LLSCLAKTGVLGDIIMRPSCAPGWFYHKSNC-YGYFRKLRNWSDAELECQSYGNGAHLAS
20 30 40 50 60
140 150 160 170 180 190
pF1KB6 IHNFNINYRIQCSVSALNQGQ-VWIGGRITGSGRCRRFQWVDGSRWNFAYWAAHQPWSRG
: ... : .:. ...: .::: . . ...::.::. . . :... : :
NP_001 ILSLKEASTIAEYISGYQRSQPIWIG--LHDPQKRQQWQWIDGAMYLYRSWSGK---SMG
70 80 90 100 110 120
200 210 220
pF1KB6 G--HCVALCTRGGY--WRRAHCLRRLPFICSY
: ::. . . ... : .: .: :.:.:
NP_001 GNKHCAEMSSNNNFLTWSSNECNKRQHFLCKYRP
130 140 150
>>NP_114433 (OMIM: 609846) regenerating islet-derived pr (158 aa)
initn: 102 init1: 55 opt: 169 Z-score: 185.4 bits: 41.0 E(85289): 0.0014
Smith-Waterman score: 169; 27.0% identity (59.8% similar) in 122 aa overlap (107-222:41-156)
80 90 100 110 120 130
pF1KB6 ISVPDMVDKNLTCPEEEDTVKVVGIPGCQTCRYLLVRSLQTFSQAWFTCRRCYRG-NLVS
: : :.:...:.: . :. : .:.:
NP_114 LLSCLAKTGVLGDIIMRPSCAPGWFYHKSNC-YGYFRKLRNWSDAELECQSYGNGAHLAS
20 30 40 50 60
140 150 160 170 180 190
pF1KB6 IHNFNINYRIQCSVSALNQGQ-VWIGGRITGSGRCRRFQWVDGSRWNFAYWAAHQPWSRG
: ... : .:. ...: .::: . . ...::.::. . . :... : :
NP_114 ILSLKEASTIAEYISGYQRSQPIWIG--LHDPQKRQQWQWIDGAMYLYRSWSGK---SMG
70 80 90 100 110 120
200 210 220
pF1KB6 G--HCVALCTRGGY--WRRAHCLRRLPFICSY
: ::. . . ... : .: .: :.:.:
NP_114 GNKHCAEMSSNNNFLTWSSNECNKRQHFLCKYRP
130 140 150
222 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 21:22:28 2016 done: Sun Nov 6 21:22:29 2016
Total Scan time: 5.170 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]