FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB6995, 222 aa 1>>>pF1KB6995 222 - 222 aa - 222 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.9679+/-0.000666; mu= 11.5142+/- 0.040 mean_var=91.5757+/-17.686, 0's: 0 Z-trim(112.5): 60 B-trim: 0 in 0/52 Lambda= 0.134024 statistics sampled from 13181 (13241) to 13181 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.772), E-opt: 0.2 (0.407), width: 16 Scan time: 2.350 The best scores are: opt bits E(32554) CCDS7955.1 PRG2 gene_id:5553|Hs108|chr11 ( 222) 1574 313.6 6.3e-86 CCDS58133.1 PRG2 gene_id:5553|Hs108|chr11 ( 211) 802 164.3 5.2e-41 CCDS7954.1 PRG3 gene_id:10394|Hs108|chr11 ( 225) 743 152.9 1.5e-37 >>CCDS7955.1 PRG2 gene_id:5553|Hs108|chr11 (222 aa) initn: 1574 init1: 1574 opt: 1574 Z-score: 1656.1 bits: 313.6 E(32554): 6.3e-86 Smith-Waterman score: 1574; 99.5% identity (100.0% similar) in 222 aa overlap (1-222:1-222) 10 20 30 40 50 60 pF1KB6 MKLPLLLALLFGAVSALHLRSETSTFETPLGAKTLPEDEETPEQEMEETPCRELEEEEEW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS79 MKLPLLLALLFGAVSALHLRSETSTFETPLGAKTLPEDEETPEQEMEETPCRELEEEEEW 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 GSGSEDASKKDGAVESISVPDMVDKNLTCPEEEDTVKVVGIPGCQTCRYLLVRSLQTFSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS79 GSGSEDASKKDGAVESISVPDMVDKNLTCPEEEDTVKVVGIPGCQTCRYLLVRSLQTFSQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB6 AWFTCRRCYRGNLVSIHNFNINYRIQCSVSALNQGQVWIGGRITGSGRCRRFQWVDGSRW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS79 AWFTCRRCYRGNLVSIHNFNINYRIQCSVSALNQGQVWIGGRITGSGRCRRFQWVDGSRW 130 140 150 160 170 180 190 200 210 220 pF1KB6 NFAYWAAHQPWSRGGHCVALCTRGGYWRRAHCLRRLPFICSY :::::::::::::::::::::::::.:::::::::::::::: CCDS79 NFAYWAAHQPWSRGGHCVALCTRGGHWRRAHCLRRLPFICSY 190 200 210 220 >>CCDS58133.1 PRG2 gene_id:5553|Hs108|chr11 (211 aa) initn: 770 init1: 770 opt: 802 Z-score: 849.7 bits: 164.3 E(32554): 5.2e-41 Smith-Waterman score: 1468; 94.6% identity (95.0% similar) in 222 aa overlap (1-222:1-211) 10 20 30 40 50 60 pF1KB6 MKLPLLLALLFGAVSALHLRSETSTFETPLGAKTLPEDEETPEQEMEETPCRELEEEEEW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 MKLPLLLALLFGAVSALHLRSETSTFETPLGAKTLPEDEETPEQEMEETPCRELEEEEEW 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 GSGSEDASKKDGAVESISVPDMVDKNLTCPEEEDTVKVVGIPGCQTCRYLLVRSLQTFSQ ::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 GSGSEDASKKDGAVESISVPDMVDKNLTCPEEEDTVKVVGIPGCQTCRYLL--------- 70 80 90 100 110 130 140 150 160 170 180 pF1KB6 AWFTCRRCYRGNLVSIHNFNINYRIQCSVSALNQGQVWIGGRITGSGRCRRFQWVDGSRW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS58 --FTCRRCYRGNLVSIHNFNINYRIQCSVSALNQGQVWIGGRITGSGRCRRFQWVDGSRW 120 130 140 150 160 190 200 210 220 pF1KB6 NFAYWAAHQPWSRGGHCVALCTRGGYWRRAHCLRRLPFICSY :::::::::::::::::::::::::.:::::::::::::::: CCDS58 NFAYWAAHQPWSRGGHCVALCTRGGHWRRAHCLRRLPFICSY 170 180 190 200 210 >>CCDS7954.1 PRG3 gene_id:10394|Hs108|chr11 (225 aa) initn: 763 init1: 657 opt: 743 Z-score: 787.6 bits: 152.9 E(32554): 1.5e-37 Smith-Waterman score: 743; 50.2% identity (72.7% similar) in 227 aa overlap (1-222:1-225) 10 20 30 40 50 pF1KB6 MKLPLLLA-LLFGAVSALHLRSETSTFETPLGAKTLPED-EETPEQEMEETPCREL---E :. ::: ::.:.::::::.... .:. : .: . . ::: . . .:. : CCDS79 MQCLLLLPFLLLGTVSALHLENDAPHLESLETQADLGQDLDSSKEQERDLALTEEVIQAE 10 20 30 40 50 60 60 70 80 90 100 110 pF1KB6 EEEEWGSGSEDASKKDGAVESISVPDMVDKNLTCPEEEDTVKVVGIPGCQTCRYLLVRSL :: .:. .: . . :.:: : .::.. ::.::: :.: : : :. :::::::. CCDS79 GEEVKASACQDNFEDEEAMESD--PAALDKDFQCPREEDIVEVQGSPRCKICRYLLVRTP 70 80 90 100 110 120 130 140 150 160 170 pF1KB6 QTFSQAWFTCRRCYRGNLVSIHNFNINYRIQCSVSALNQGQVWIGGRITGSGRCRRFQWV .::..: .: ::: :::::::.::.:::::: .:..::.:::::: . : .:: :. CCDS79 KTFAEAQNVCSRCYGGNLVSIHDFNFNYRIQCCTSTVNQAQVWIGGNLRGWFLWKRFCWT 120 130 140 150 160 170 180 190 200 210 220 pF1KB6 DGSRWNFAYWAAHQPWSRGGHCVALCTRGGYWRRAHCLRRLPFICSY :::.::::::. :: . : ::::::.:::::::.: ..:::.::. CCDS79 DGSHWNFAYWSPGQPGNGQGSCVALCTKGGYWRRAQCDKQLPFVCSF 180 190 200 210 220 222 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 21:22:28 2016 done: Sun Nov 6 21:22:28 2016 Total Scan time: 2.350 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]