FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6990, 252 aa
  1>>>pF1KB6990 252 - 252 aa - 252 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9417+/-0.000736; mu= 7.4059+/- 0.045
 mean_var=108.6237+/-21.149, 0's: 0 Z-trim(112.4): 33  B-trim: 0 in 0/51
 Lambda= 0.123059
 statistics sampled from 13163 (13194) to 13163 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.764), E-opt: 0.2 (0.405), width:  16
 Scan time:  2.530

The best scores are:                                      opt bits E(32554)
CCDS3565.1 AREG gene_id:374|Hs108|chr4             ( 252) 1667 305.9 1.7e-83


>>CCDS3565.1 AREG gene_id:374|Hs108|chr4                  (252 aa)
 initn: 1667 init1: 1667 opt: 1667  Z-score: 1612.6  bits: 305.9 E(32554): 1.7e-83
Smith-Waterman score: 1667; 100.0% identity (100.0% similar) in 252 aa overlap (1-252:1-252)

               10        20        30        40        50        60
pF1KB6 MRAPLLPPAPVVLSLLILGSGHYAAGLDLNDTYSGKREPFSGDHSADGFEVTSRSEMSSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MRAPLLPPAPVVLSLLILGSGHYAAGLDLNDTYSGKREPFSGDHSADGFEVTSRSEMSSG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 SEISPVSEMPSSSEPSSGADYDYSEEYDNEPQIPGYIVDDSVRVEQVVKPPQNKTESENT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 SEISPVSEMPSSSEPSSGADYDYSEEYDNEPQIPGYIVDDSVRVEQVVKPPQNKTESENT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 SDKPKRKKKGGKNGKNRRNRKKKNPCNAEFQNFCIHGECKYIEHLEAVTCKCQQEYFGER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 SDKPKRKKKGGKNGKNRRNRKKKNPCNAEFQNFCIHGECKYIEHLEAVTCKCQQEYFGER
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 CGEKSMKTHSMIDSSLSKIALAAIAAFMSAVILTAVAVITVQLRRQYVRKYEGEAEERKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 CGEKSMKTHSMIDSSLSKIALAAIAAFMSAVILTAVAVITVQLRRQYVRKYEGEAEERKK
              190       200       210       220       230       240

              250  
pF1KB6 LRQENGNVHAIA
       ::::::::::::
CCDS35 LRQENGNVHAIA
              250  




252 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 02:01:32 2016 done: Mon Nov  7 02:01:32 2016
 Total Scan time:  2.530 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]