FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6945, 211 aa
  1>>>pF1KB6945 211 - 211 aa - 211 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6175+/-0.000627; mu= 12.9128+/- 0.038
 mean_var=70.8664+/-13.939, 0's: 0 Z-trim(112.0): 20  B-trim: 0 in 0/50
 Lambda= 0.152354
 statistics sampled from 12821 (12839) to 12821 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.759), E-opt: 0.2 (0.394), width:  16
 Scan time:  2.190

The best scores are:                                      opt bits E(32554)
CCDS4781.1 BAK1 gene_id:578|Hs108|chr6             ( 211) 1422 320.7 4.1e-88


>>CCDS4781.1 BAK1 gene_id:578|Hs108|chr6                  (211 aa)
 initn: 1422 init1: 1422 opt: 1422  Z-score: 1695.4  bits: 320.7 E(32554): 4.1e-88
Smith-Waterman score: 1422; 100.0% identity (100.0% similar) in 211 aa overlap (1-211:1-211)

               10        20        30        40        50        60
pF1KB6 MASGQGPGPPRQECGEPALPSASEEQVAQDTEEVFRSYVFYRHQQEQEAEGVAAPADPEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MASGQGPGPPRQECGEPALPSASEEQVAQDTEEVFRSYVFYRHQQEQEAEGVAAPADPEM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 VTLPLQPSSTMGQVGRQLAIIGDDINRRYDSEFQTMLQHLQPTAENAYEYFTKIATSLFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VTLPLQPSSTMGQVGRQLAIIGDDINRRYDSEFQTMLQHLQPTAENAYEYFTKIATSLFE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 SGINWGRVVALLGFGYRLALHVYQHGLTGFLGQVTRFVVDFMLHHCIARWIAQRGGWVAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SGINWGRVVALLGFGYRLALHVYQHGLTGFLGQVTRFVVDFMLHHCIARWIAQRGGWVAA
              130       140       150       160       170       180

              190       200       210 
pF1KB6 LNLGNGPILNVLVVLGVVLLGQFVVRRFFKS
       :::::::::::::::::::::::::::::::
CCDS47 LNLGNGPILNVLVVLGVVLLGQFVVRRFFKS
              190       200       210 




211 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 02:26:40 2016 done: Mon Nov  7 02:26:41 2016
 Total Scan time:  2.190 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]