FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6937, 210 aa
  1>>>pF1KB6937 210 - 210 aa - 210 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0905+/-0.000732; mu= 12.4152+/- 0.045
 mean_var=103.6176+/-20.720, 0's: 0 Z-trim(112.8): 17  B-trim: 0 in 0/52
 Lambda= 0.125996
 statistics sampled from 13474 (13489) to 13474 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.759), E-opt: 0.2 (0.414), width:  16
 Scan time:  2.290

The best scores are:                                      opt bits E(32554)
CCDS74092.1 COPZ2 gene_id:51226|Hs108|chr17        ( 210) 1384 260.9 4.1e-70
CCDS61139.1 COPZ1 gene_id:22818|Hs108|chr12        ( 185)  871 167.6 4.3e-42
CCDS8877.1 COPZ1 gene_id:22818|Hs108|chr12         ( 177)  859 165.4 1.9e-41
CCDS61138.1 COPZ1 gene_id:22818|Hs108|chr12        ( 154)  738 143.4 7.2e-35
CCDS61137.1 COPZ1 gene_id:22818|Hs108|chr12        ( 160)  720 140.1 7.1e-34


>>CCDS74092.1 COPZ2 gene_id:51226|Hs108|chr17             (210 aa)
 initn: 1384 init1: 1384 opt: 1384  Z-score: 1372.3  bits: 260.9 E(32554): 4.1e-70
Smith-Waterman score: 1384; 100.0% identity (100.0% similar) in 210 aa overlap (1-210:1-210)

               10        20        30        40        50        60
pF1KB6 MQRPEAWPRPHPGEGAAAAQAGGPAPPARAGEPSGLRLQEPSLYTIKAVFILDNDGRRLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MQRPEAWPRPHPGEGAAAAQAGGPAPPARAGEPSGLRLQEPSLYTIKAVFILDNDGRRLL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 AKYYDDTFPSMKEQMVFEKNVFNKTSRTESEIAFFGGMTIVYKNSIDLFLYVVGSSYENE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 AKYYDDTFPSMKEQMVFEKNVFNKTSRTESEIAFFGGMTIVYKNSIDLFLYVVGSSYENE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 LMLMSVLTCLFESLNHMLRKNVEKRWLLENMDGAFLVLDEIVDGGVILESDPQQVIQKVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 LMLMSVLTCLFESLNHMLRKNVEKRWLLENMDGAFLVLDEIVDGGVILESDPQQVIQKVN
              130       140       150       160       170       180

              190       200       210
pF1KB6 FRADDGGLTEQSVAQVLQSAKEQIKWSLLK
       ::::::::::::::::::::::::::::::
CCDS74 FRADDGGLTEQSVAQVLQSAKEQIKWSLLK
              190       200       210

>>CCDS61139.1 COPZ1 gene_id:22818|Hs108|chr12             (185 aa)
 initn: 871 init1: 871 opt: 871  Z-score: 869.1  bits: 167.6 E(32554): 4.3e-42
Smith-Waterman score: 871; 75.1% identity (94.8% similar) in 173 aa overlap (38-210:13-185)

        10        20        30        40        50        60       
pF1KB6 PRPHPGEGAAAAQAGGPAPPARAGEPSGLRLQEPSLYTIKAVFILDNDGRRLLAKYYDDT
                                     ::::::::.::..:::::: ::.:::::::
CCDS61                   MGGFRTEGMFVSLQEPSLYTVKAILILDNDGDRLFAKYYDDT
                                 10        20        30        40  

        70        80        90       100       110       120       
pF1KB6 FPSMKEQMVFEKNVFNKTSRTESEIAFFGGMTIVYKNSIDLFLYVVGSSYENELMLMSVL
       .::.::: .::::.:::: ::.::::.. :.:.:::.::::..::.:::::::::::.::
CCDS61 YPSVKEQKAFEKNIFNKTHRTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVL
             50        60        70        80        90       100  

       130       140       150       160       170       180       
pF1KB6 TCLFESLNHMLRKNVEKRWLLENMDGAFLVLDEIVDGGVILESDPQQVIQKVNFRADDGG
       .:::.::..::::::::: :::::.: ::..:::::::::::::::::...: .:..:  
CCDS61 NCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRGEDVP
            110       120       130       140       150       160  

       190       200       210
pF1KB6 LTEQSVAQVLQSAKEQIKWSLLK
       ::::.:.:::::::::::::::.
CCDS61 LTEQTVSQVLQSAKEQIKWSLLR
            170       180     

>>CCDS8877.1 COPZ1 gene_id:22818|Hs108|chr12              (177 aa)
 initn: 873 init1: 859 opt: 859  Z-score: 857.6  bits: 165.4 E(32554): 1.9e-41
Smith-Waterman score: 859; 74.9% identity (94.7% similar) in 171 aa overlap (40-210:7-177)

      10        20        30        40        50        60         
pF1KB6 PHPGEGAAAAQAGGPAPPARAGEPSGLRLQEPSLYTIKAVFILDNDGRRLLAKYYDDTFP
                                     ::::::.::..:::::: ::.:::::::.:
CCDS88                         MEALILEPSLYTVKAILILDNDGDRLFAKYYDDTYP
                                       10        20        30      

      70        80        90       100       110       120         
pF1KB6 SMKEQMVFEKNVFNKTSRTESEIAFFGGMTIVYKNSIDLFLYVVGSSYENELMLMSVLTC
       :.::: .::::.:::: ::.::::.. :.:.:::.::::..::.:::::::::::.::.:
CCDS88 SVKEQKAFEKNIFNKTHRTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNC
         40        50        60        70        80        90      

     130       140       150       160       170       180         
pF1KB6 LFESLNHMLRKNVEKRWLLENMDGAFLVLDEIVDGGVILESDPQQVIQKVNFRADDGGLT
       ::.::..::::::::: :::::.: ::..:::::::::::::::::...: .:..:  ::
CCDS88 LFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRGEDVPLT
        100       110       120       130       140       150      

     190       200       210
pF1KB6 EQSVAQVLQSAKEQIKWSLLK
       ::.:.:::::::::::::::.
CCDS88 EQTVSQVLQSAKEQIKWSLLR
        160       170       

>>CCDS61138.1 COPZ1 gene_id:22818|Hs108|chr12             (154 aa)
 initn: 751 init1: 737 opt: 738  Z-score: 739.5  bits: 143.4 E(32554): 7.2e-35
Smith-Waterman score: 738; 73.5% identity (93.4% similar) in 151 aa overlap (60-210:4-154)

      30        40        50        60        70        80         
pF1KB6 AGEPSGLRLQEPSLYTIKAVFILDNDGRRLLAKYYDDTFPSMKEQMVFEKNVFNKTSRTE
                                     :  :::::.::.::: .::::.:::: ::.
CCDS61                            MEALILYYDDTYPSVKEQKAFEKNIFNKTHRTD
                                          10        20        30   

      90       100       110       120       130       140         
pF1KB6 SEIAFFGGMTIVYKNSIDLFLYVVGSSYENELMLMSVLTCLFESLNHMLRKNVEKRWLLE
       ::::.. :.:.:::.::::..::.:::::::::::.::.:::.::..::::::::: :::
CCDS61 SEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKRALLE
            40        50        60        70        80        90   

     150       160       170       180       190       200         
pF1KB6 NMDGAFLVLDEIVDGGVILESDPQQVIQKVNFRADDGGLTEQSVAQVLQSAKEQIKWSLL
       ::.: ::..:::::::::::::::::...: .:..:  ::::.:.:::::::::::::::
CCDS61 NMEGLFLAVDEIVDGGVILESDPQQVVHRVALRGEDVPLTEQTVSQVLQSAKEQIKWSLL
           100       110       120       130       140       150   

     210
pF1KB6 K
       .
CCDS61 R
        

>>CCDS61137.1 COPZ1 gene_id:22818|Hs108|chr12             (160 aa)
 initn: 796 init1: 720 opt: 720  Z-score: 721.6  bits: 140.1 E(32554): 7.1e-34
Smith-Waterman score: 761; 69.6% identity (86.5% similar) in 171 aa overlap (40-210:7-160)

      10        20        30        40        50        60         
pF1KB6 PHPGEGAAAAQAGGPAPPARAGEPSGLRLQEPSLYTIKAVFILDNDGRRLLAKYYDDTFP
                                     ::::::.::..:::::: ::.:::::::.:
CCDS61                         MEALILEPSLYTVKAILILDNDGDRLFAKYYDDTYP
                                       10        20        30      

      70        80        90       100       110       120         
pF1KB6 SMKEQMVFEKNVFNKTSRTESEIAFFGGMTIVYKNSIDLFLYVVGSSYENELMLMSVLTC
       :.::: .::::.:::: ::.::::.. :.:.:::.::::..::.:::::::::::.::.:
CCDS61 SVKEQKAFEKNIFNKTHRTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNC
         40        50        60        70        80        90      

     130       140       150       160       170       180         
pF1KB6 LFESLNHMLRKNVEKRWLLENMDGAFLVLDEIVDGGVILESDPQQVIQKVNFRADDGGLT
       ::.::..::::::::: :::::.: ::..:::::::::::::::::...:          
CCDS61 LFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRV----------
        100       110       120       130       140                

     190       200       210
pF1KB6 EQSVAQVLQSAKEQIKWSLLK
              :::::::::::::.
CCDS61 -------LQSAKEQIKWSLLR
               150       160




210 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 01:14:26 2016 done: Mon Nov  7 01:14:26 2016
 Total Scan time:  2.290 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]