FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6893, 184 aa
  1>>>pF1KB6893 184 - 184 aa - 184 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7936+/-0.000794; mu= 15.8186+/- 0.048
 mean_var=64.0428+/-12.173, 0's: 0 Z-trim(107.9): 14  B-trim: 0 in 0/51
 Lambda= 0.160265
 statistics sampled from 9849 (9852) to 9849 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.683), E-opt: 0.2 (0.303), width:  16
 Scan time:  1.770

The best scores are:                                      opt bits E(32554)
CCDS10552.1 TNFRSF17 gene_id:608|Hs108|chr16       ( 184) 1227 291.9 1.5e-79


>>CCDS10552.1 TNFRSF17 gene_id:608|Hs108|chr16            (184 aa)
 initn: 1227 init1: 1227 opt: 1227  Z-score: 1541.6  bits: 291.9 E(32554): 1.5e-79
Smith-Waterman score: 1227; 99.5% identity (100.0% similar) in 184 aa overlap (1-184:1-184)

               10        20        30        40        50        60
pF1KB6 MLQMAGQCSQNEYFDSLLHACIPCQLRCSSNTPPLTCQRYCNASVTNSVKGTNAILWTCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MLQMAGQCSQNEYFDSLLHACIPCQLRCSSNTPPLTCQRYCNASVTNSVKGTNAILWTCL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 GLSLIISLAVFVLMFLLRKISSEPLKDEFKNTGSGLLGMANIDLEKSRTGDEIILPRGLE
       ::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::
CCDS10 GLSLIISLAVFVLMFLLRKINSEPLKDEFKNTGSGLLGMANIDLEKSRTGDEIILPRGLE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 YTVEECTCEDCIKSKPKVDSDHCFPLPAMEEGATILVTTKTNDYCKSLPAALSATEIEKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 YTVEECTCEDCIKSKPKVDSDHCFPLPAMEEGATILVTTKTNDYCKSLPAALSATEIEKS
              130       140       150       160       170       180

           
pF1KB6 ISAR
       ::::
CCDS10 ISAR
           




184 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 04:10:06 2016 done: Sat Nov  5 04:10:06 2016
 Total Scan time:  1.770 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]