FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6868, 196 aa
  1>>>pF1KB6868 196 - 196 aa - 196 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5869+/-0.000628; mu= 9.9785+/- 0.038
 mean_var=126.3206+/-25.629, 0's: 0 Z-trim(117.1): 8  B-trim: 626 in 1/52
 Lambda= 0.114114
 statistics sampled from 17839 (17844) to 17839 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.851), E-opt: 0.2 (0.548), width:  16
 Scan time:  2.360

The best scores are:                                      opt bits E(32554)
CCDS32769.1 ANAPC11 gene_id:51529|Hs108|chr17      ( 196) 1440 246.6 7.1e-66
CCDS74180.1 ANAPC11 gene_id:51529|Hs108|chr17      (  89)  408 76.4 5.5e-15
CCDS11789.1 ANAPC11 gene_id:51529|Hs108|chr17      (  84)  323 62.4 8.6e-11


>>CCDS32769.1 ANAPC11 gene_id:51529|Hs108|chr17           (196 aa)
 initn: 1440 init1: 1440 opt: 1440  Z-score: 1296.1  bits: 246.6 E(32554): 7.1e-66
Smith-Waterman score: 1440; 100.0% identity (100.0% similar) in 196 aa overlap (1-196:1-196)

               10        20        30        40        50        60
pF1KB6 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCPLHGESISRCLGWCPQPVPVLGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCPLHGESISRCLGWCPQPVPVLGG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 RAHPQVPINTASPTPGQHTGSLMSREESSRSPDPTPPALDQETSSLLRCTSPWCLDHSCD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RAHPQVPINTASPTPGQHTGSLMSREESSRSPDPTPPALDQETSSLLRCTSPWCLDHSCD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 LFGITDQVSADGPRACRQGARRRLPAGVGPVLPLLPHALHPQVAARTAGAAALPHVPPGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LFGITDQVSADGPRACRQGARRRLPAGVGPVLPLLPHALHPQVAARTAGAAALPHVPPGM
              130       140       150       160       170       180

              190      
pF1KB6 EVQGVRPDLALAGGAS
       ::::::::::::::::
CCDS32 EVQGVRPDLALAGGAS
              190      

>>CCDS74180.1 ANAPC11 gene_id:51529|Hs108|chr17           (89 aa)
 initn: 401 init1: 401 opt: 408  Z-score: 382.5  bits: 76.4 E(32554): 5.5e-15
Smith-Waterman score: 408; 73.6% identity (83.9% similar) in 87 aa overlap (110-196:6-89)

      80        90       100       110       120       130         
pF1KB6 GSLMSREESSRSPDPTPPALDQETSSLLRCTSPWCLDHSCDLFGITDQVSADGPRACRQG
                                     .. : :  .    .. ...: . ::   ::
CCDS74                          MRTVASAGWHLTDAALTVSVPSMLS-ERPRL--QG
                                        10        20         30    

     140       150       160       170       180       190      
pF1KB6 ARRRLPAGVGPVLPLLPHALHPQVAARTAGAAALPHVPPGMEVQGVRPDLALAGGAS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 ARRRLPAGVGPVLPLLPHALHPQVAARTAGAAALPHVPPGMEVQGVRPDLALAGGAS
             40        50        60        70        80         

>>CCDS11789.1 ANAPC11 gene_id:51529|Hs108|chr17           (84 aa)
 initn: 337 init1: 312 opt: 323  Z-score: 307.2  bits: 62.4 E(32554): 8.6e-11
Smith-Waterman score: 323; 78.4% identity (84.3% similar) in 51 aa overlap (1-51:1-51)

               10        20        30        40        50        60
pF1KB6 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCPLHGESISRCLGWCPQPVPVLGG
       ::::::::::::::::::::::::::::::::::::: . :..     : :         
CCDS11 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 RAHPQVPINTASPTPGQHTGSLMSREESSRSPDPTPPALDQETSSLLRCTSPWCLDHSCD
                                                                   
CCDS11 LKWLHAQQVQQHCPMCRQEWKFKE                                    
               70        80                                        




196 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 22:49:16 2016 done: Sat Nov  5 22:49:16 2016
 Total Scan time:  2.360 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]