FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB6787, 125 aa 1>>>pF1KB6787 125 - 125 aa - 125 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.5338+/-0.000308; mu= 9.9051+/- 0.019 mean_var=76.3772+/-14.728, 0's: 0 Z-trim(117.4): 1 B-trim: 614 in 1/49 Lambda= 0.146755 statistics sampled from 29433 (29434) to 29433 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.726), E-opt: 0.2 (0.345), width: 16 Scan time: 4.740 The best scores are: opt bits E(85289) NP_001019 (OMIM: 180465) 40S ribosomal protein S25 ( 125) 806 179.2 1.5e-45 >>NP_001019 (OMIM: 180465) 40S ribosomal protein S25 [Ho (125 aa) initn: 806 init1: 806 opt: 806 Z-score: 938.6 bits: 179.2 E(85289): 1.5e-45 Smith-Waterman score: 806; 100.0% identity (100.0% similar) in 125 aa overlap (1-125:1-125) 10 20 30 40 50 60 pF1KB6 MPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MPPKDDKKKKDAGKSAKKDKDPVNKSGGKAKKKKWSKGKVRDKLNNLVLFDKATYDKLCK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTKGGDAPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVSKHRAQVIYTRNTKGGDAPA 70 80 90 100 110 120 pF1KB6 AGEDA ::::: NP_001 AGEDA 125 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 15:14:34 2016 done: Fri Nov 4 15:14:35 2016 Total Scan time: 4.740 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]