FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6784, 153 aa
  1>>>pF1KB6784 153 - 153 aa - 153 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0371+/-0.000346; mu= 12.6399+/- 0.021
 mean_var=58.3398+/-11.743, 0's: 0 Z-trim(114.1): 30  B-trim: 22 in 1/53
 Lambda= 0.167916
 statistics sampled from 23728 (23746) to 23728 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.682), E-opt: 0.2 (0.278), width:  16
 Scan time:  5.180

The best scores are:                                      opt bits E(85289)
NP_000580 (OMIM: 147780) interleukin-4 isoform 1 p ( 153) 1013 253.4 1.1e-67
NP_758858 (OMIM: 147780) interleukin-4 isoform 2 p ( 137)  625 159.4 1.9e-39


>>NP_000580 (OMIM: 147780) interleukin-4 isoform 1 precu  (153 aa)
 initn: 1013 init1: 1013 opt: 1013  Z-score: 1336.5  bits: 253.4 E(85289): 1.1e-67
Smith-Waterman score: 1013; 100.0% identity (100.0% similar) in 153 aa overlap (1-153:1-153)

               10        20        30        40        50        60
pF1KB6 MGLTSQLLPPLFFLLACAGNFVHGHKCDITLQEIIKTLNSLTEQKTLCTELTVTDIFAAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MGLTSQLLPPLFFLLACAGNFVHGHKCDITLQEIIKTLNSLTEQKTLCTELTVTDIFAAS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 KNTTEKETFCRAATVLRQFYSHHEKDTRCLGATAQQFHRHKQLIRFLKRLDRNLWGLAGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 KNTTEKETFCRAATVLRQFYSHHEKDTRCLGATAQQFHRHKQLIRFLKRLDRNLWGLAGL
               70        80        90       100       110       120

              130       140       150   
pF1KB6 NSCPVKEANQSTLENFLERLKTIMREKYSKCSS
       :::::::::::::::::::::::::::::::::
NP_000 NSCPVKEANQSTLENFLERLKTIMREKYSKCSS
              130       140       150   

>>NP_758858 (OMIM: 147780) interleukin-4 isoform 2 precu  (137 aa)
 initn: 625 init1: 625 opt: 625  Z-score: 829.2  bits: 159.4 E(85289): 1.9e-39
Smith-Waterman score: 875; 89.5% identity (89.5% similar) in 153 aa overlap (1-153:1-137)

               10        20        30        40        50        60
pF1KB6 MGLTSQLLPPLFFLLACAGNFVHGHKCDITLQEIIKTLNSLTEQKTLCTELTVTDIFAAS
       :::::::::::::::::::::::::::::::::::::::::::::               
NP_758 MGLTSQLLPPLFFLLACAGNFVHGHKCDITLQEIIKTLNSLTEQK---------------
               10        20        30        40                    

               70        80        90       100       110       120
pF1KB6 KNTTEKETFCRAATVLRQFYSHHEKDTRCLGATAQQFHRHKQLIRFLKRLDRNLWGLAGL
        :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_758 -NTTEKETFCRAATVLRQFYSHHEKDTRCLGATAQQFHRHKQLIRFLKRLDRNLWGLAGL
           50        60        70        80        90       100    

              130       140       150   
pF1KB6 NSCPVKEANQSTLENFLERLKTIMREKYSKCSS
       :::::::::::::::::::::::::::::::::
NP_758 NSCPVKEANQSTLENFLERLKTIMREKYSKCSS
          110       120       130       




153 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 22:29:47 2016 done: Sat Nov  5 22:29:48 2016
 Total Scan time:  5.180 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]