FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6780, 142 aa
  1>>>pF1KB6780 142 - 142 aa - 142 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2935+/-0.000322; mu= 11.1889+/- 0.020
 mean_var=58.4347+/-11.775, 0's: 0 Z-trim(116.1): 39  B-trim: 496 in 2/51
 Lambda= 0.167780
 statistics sampled from 26999 (27024) to 26999 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.712), E-opt: 0.2 (0.317), width:  16
 Scan time:  4.850

The best scores are:                                      opt bits E(85289)
NP_004115 (OMIM: 601713) glia maturation factor be ( 142)  942 235.7 1.9e-62
NP_004868 (OMIM: 604104) glia maturation factor ga ( 142)  794 199.9 1.1e-51
NP_001287937 (OMIM: 604104) glia maturation factor ( 101)  587 149.8   1e-36


>>NP_004115 (OMIM: 601713) glia maturation factor beta [  (142 aa)
 initn: 942 init1: 942 opt: 942  Z-score: 1242.3  bits: 235.7 E(85289): 1.9e-62
Smith-Waterman score: 942; 100.0% identity (100.0% similar) in 142 aa overlap (1-142:1-142)

               10        20        30        40        50        60
pF1KB6 MSESLVVCDVAEDLVEKLRKFRFRKETNNAAIIMKIDKDKRLVVLDEELEGISPDELKDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MSESLVVCDVAEDLVEKLRKFRFRKETNNAAIIMKIDKDKRLVVLDEELEGISPDELKDE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LPERQPRFIVYSYKYQHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNKLVQTAELTKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 LPERQPRFIVYSYKYQHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNKLVQTAELTKV
               70        80        90       100       110       120

              130       140  
pF1KB6 FEIRNTEDLTEEWLREKLGFFH
       ::::::::::::::::::::::
NP_004 FEIRNTEDLTEEWLREKLGFFH
              130       140  

>>NP_004868 (OMIM: 604104) glia maturation factor gamma   (142 aa)
 initn: 794 init1: 794 opt: 794  Z-score: 1048.7  bits: 199.9 E(85289): 1.1e-51
Smith-Waterman score: 794; 82.3% identity (96.5% similar) in 141 aa overlap (1-141:1-141)

               10        20        30        40        50        60
pF1KB6 MSESLVVCDVAEDLVEKLRKFRFRKETNNAAIIMKIDKDKRLVVLDEELEGISPDELKDE
       ::.:::::.:  .:.::::::::::::.:::::::.:::...:::.::...:::.::: :
NP_004 MSDSLVVCEVDPELTEKLRKFRFRKETDNAAIIMKVDKDRQMVVLEEEFQNISPEELKME
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LPERQPRFIVYSYKYQHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNKLVQTAELTKV
       ::::::::.:::::: :::::::::::::::::::::::::::::::::.::::::::::
NP_004 LPERQPRFVVYSYKYVHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTAELTKV
               70        80        90       100       110       120

              130       140  
pF1KB6 FEIRNTEDLTEEWLREKLGFFH
       ::::.:.:::: ::.:::.:: 
NP_004 FEIRTTDDLTEAWLQEKLSFFR
              130       140  

>>NP_001287937 (OMIM: 604104) glia maturation factor gam  (101 aa)
 initn: 587 init1: 587 opt: 587  Z-score: 780.3  bits: 149.8 E(85289): 1e-36
Smith-Waterman score: 587; 85.0% identity (97.0% similar) in 100 aa overlap (42-141:1-100)

              20        30        40        50        60        70 
pF1KB6 EDLVEKLRKFRFRKETNNAAIIMKIDKDKRLVVLDEELEGISPDELKDELPERQPRFIVY
                                     .:::.::...:::.::: :::::::::.::
NP_001                               MVVLEEEFQNISPEELKMELPERQPRFVVY
                                             10        20        30

              80        90       100       110       120       130 
pF1KB6 SYKYQHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNKLVQTAELTKVFEIRNTEDLTE
       :::: :::::::::::::::::::::::::::::::::.::::::::::::::.:.::::
NP_001 SYKYVHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTAELTKVFEIRTTDDLTE
               40        50        60        70        80        90

             140  
pF1KB6 EWLREKLGFFH
        ::.:::.:: 
NP_001 AWLQEKLSFFR
              100 




142 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 21:49:34 2016 done: Sun Nov  6 21:49:35 2016
 Total Scan time:  4.850 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]