FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6780, 142 aa
  1>>>pF1KB6780 142 - 142 aa - 142 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2133+/-0.000682; mu= 11.5186+/- 0.041
 mean_var=57.3977+/-11.258, 0's: 0 Z-trim(109.3): 15  B-trim: 0 in 0/49
 Lambda= 0.169288
 statistics sampled from 10747 (10759) to 10747 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.729), E-opt: 0.2 (0.33), width:  16
 Scan time:  1.370

The best scores are:                                      opt bits E(32554)
CCDS9718.1 GMFB gene_id:2764|Hs108|chr14           ( 142)  942 237.7 1.9e-63
CCDS12532.1 GMFG gene_id:9535|Hs108|chr19          ( 142)  794 201.5 1.4e-52
CCDS74364.1 GMFG gene_id:9535|Hs108|chr19          ( 101)  587 150.9 1.7e-37


>>CCDS9718.1 GMFB gene_id:2764|Hs108|chr14                (142 aa)
 initn: 942 init1: 942 opt: 942  Z-score: 1252.7  bits: 237.7 E(32554): 1.9e-63
Smith-Waterman score: 942; 100.0% identity (100.0% similar) in 142 aa overlap (1-142:1-142)

               10        20        30        40        50        60
pF1KB6 MSESLVVCDVAEDLVEKLRKFRFRKETNNAAIIMKIDKDKRLVVLDEELEGISPDELKDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 MSESLVVCDVAEDLVEKLRKFRFRKETNNAAIIMKIDKDKRLVVLDEELEGISPDELKDE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LPERQPRFIVYSYKYQHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNKLVQTAELTKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS97 LPERQPRFIVYSYKYQHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNKLVQTAELTKV
               70        80        90       100       110       120

              130       140  
pF1KB6 FEIRNTEDLTEEWLREKLGFFH
       ::::::::::::::::::::::
CCDS97 FEIRNTEDLTEEWLREKLGFFH
              130       140  

>>CCDS12532.1 GMFG gene_id:9535|Hs108|chr19               (142 aa)
 initn: 794 init1: 794 opt: 794  Z-score: 1057.4  bits: 201.5 E(32554): 1.4e-52
Smith-Waterman score: 794; 82.3% identity (96.5% similar) in 141 aa overlap (1-141:1-141)

               10        20        30        40        50        60
pF1KB6 MSESLVVCDVAEDLVEKLRKFRFRKETNNAAIIMKIDKDKRLVVLDEELEGISPDELKDE
       ::.:::::.:  .:.::::::::::::.:::::::.:::...:::.::...:::.::: :
CCDS12 MSDSLVVCEVDPELTEKLRKFRFRKETDNAAIIMKVDKDRQMVVLEEEFQNISPEELKME
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LPERQPRFIVYSYKYQHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNKLVQTAELTKV
       ::::::::.:::::: :::::::::::::::::::::::::::::::::.::::::::::
CCDS12 LPERQPRFVVYSYKYVHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTAELTKV
               70        80        90       100       110       120

              130       140  
pF1KB6 FEIRNTEDLTEEWLREKLGFFH
       ::::.:.:::: ::.:::.:: 
CCDS12 FEIRTTDDLTEAWLQEKLSFFR
              130       140  

>>CCDS74364.1 GMFG gene_id:9535|Hs108|chr19               (101 aa)
 initn: 587 init1: 587 opt: 587  Z-score: 786.5  bits: 150.9 E(32554): 1.7e-37
Smith-Waterman score: 587; 85.0% identity (97.0% similar) in 100 aa overlap (42-141:1-100)

              20        30        40        50        60        70 
pF1KB6 EDLVEKLRKFRFRKETNNAAIIMKIDKDKRLVVLDEELEGISPDELKDELPERQPRFIVY
                                     .:::.::...:::.::: :::::::::.::
CCDS74                               MVVLEEEFQNISPEELKMELPERQPRFVVY
                                             10        20        30

              80        90       100       110       120       130 
pF1KB6 SYKYQHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNKLVQTAELTKVFEIRNTEDLTE
       :::: :::::::::::::::::::::::::::::::::.::::::::::::::.:.::::
CCDS74 SYKYVHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTAELTKVFEIRTTDDLTE
               40        50        60        70        80        90

             140  
pF1KB6 EWLREKLGFFH
        ::.:::.:: 
CCDS74 AWLQEKLSFFR
              100 




142 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 21:49:34 2016 done: Sun Nov  6 21:49:34 2016
 Total Scan time:  1.370 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]