FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6778, 152 aa
  1>>>pF1KB6778 152 - 152 aa - 152 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1586+/-0.000276; mu= 12.3341+/- 0.017
 mean_var=59.7415+/-11.473, 0's: 0 Z-trim(118.2): 19  B-trim: 47 in 1/56
 Lambda= 0.165934
 statistics sampled from 30922 (30935) to 30922 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.749), E-opt: 0.2 (0.363), width:  16
 Scan time:  5.400

The best scores are:                                      opt bits E(85289)
NP_000579 (OMIM: 147740) interleukin-3 precursor [ ( 152)  998 246.5 1.2e-65


>>NP_000579 (OMIM: 147740) interleukin-3 precursor [Homo  (152 aa)
 initn: 998 init1: 998 opt: 998  Z-score: 1299.6  bits: 246.5 E(85289): 1.2e-65
Smith-Waterman score: 998; 100.0% identity (100.0% similar) in 152 aa overlap (1-152:1-152)

               10        20        30        40        50        60
pF1KB6 MSRLPVLLLLQLLVRPGLQAPMTQTTPLKTSWVNCSNMIDEIITHLKQPPLPLLDFNNLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MSRLPVLLLLQLLVRPGLQAPMTQTTPLKTSWVNCSNMIDEIITHLKQPPLPLLDFNNLN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 GEDQDILMENNLRRPNLEAFNRAVKSLQNASAIESILKNLLPCLPLATAAPTRHPIHIKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 GEDQDILMENNLRRPNLEAFNRAVKSLQNASAIESILKNLLPCLPLATAAPTRHPIHIKD
               70        80        90       100       110       120

              130       140       150  
pF1KB6 GDWNEFRRKLTFYLKTLENAQAQQTTLSLAIF
       ::::::::::::::::::::::::::::::::
NP_000 GDWNEFRRKLTFYLKTLENAQAQQTTLSLAIF
              130       140       150  




152 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 04:37:54 2016 done: Sun Nov  6 04:37:54 2016
 Total Scan time:  5.400 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]