FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6661, 424 aa
  1>>>pF1KB6661 424 - 424 aa - 424 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7609+/-0.000707; mu= 17.0850+/- 0.043
 mean_var=93.1438+/-18.789, 0's: 0 Z-trim(112.1): 10  B-trim: 0 in 0/51
 Lambda= 0.132891
 statistics sampled from 12875 (12880) to 12875 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.729), E-opt: 0.2 (0.396), width:  16
 Scan time:  3.170

The best scores are:                                      opt bits E(32554)
CCDS14134.2 GPR143 gene_id:4935|Hs108|chrX         ( 404) 2737 534.4 7.5e-152


>>CCDS14134.2 GPR143 gene_id:4935|Hs108|chrX              (404 aa)
 initn: 2737 init1: 2737 opt: 2737  Z-score: 2839.6  bits: 534.4 E(32554): 7.5e-152
Smith-Waterman score: 2737; 100.0% identity (100.0% similar) in 404 aa overlap (21-424:1-404)

               10        20        30        40        50        60
pF1KB6 MTQAGRRGPGTPEPRPRTQPMASPRLGTFCCPTRDAATQLVLSFQPRAFHALCLGSGGLR
                           ::::::::::::::::::::::::::::::::::::::::
CCDS14                     MASPRLGTFCCPTRDAATQLVLSFQPRAFHALCLGSGGLR
                                   10        20        30        40

               70        80        90       100       110       120
pF1KB6 LALGLLQLLPGRRPAGPGSPATSPPASVRILRAAAACDLLGCLGMVIRSTVWLGFPNFVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LALGLLQLLPGRRPAGPGSPATSPPASVRILRAAAACDLLGCLGMVIRSTVWLGFPNFVD
               50        60        70        80        90       100

              130       140       150       160       170       180
pF1KB6 SVSDMNHTEIWPAAFCVGSAMWIQLLYSACFWWLFCYAVDAYLVIRRSAGLSTILLYHIM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SVSDMNHTEIWPAAFCVGSAMWIQLLYSACFWWLFCYAVDAYLVIRRSAGLSTILLYHIM
              110       120       130       140       150       160

              190       200       210       220       230       240
pF1KB6 AWGLATLLCVEGAAMLYYPSVSRCERGLDHAIPHYVTMYLPLLLVLVANPILFQKTVTAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 AWGLATLLCVEGAAMLYYPSVSRCERGLDHAIPHYVTMYLPLLLVLVANPILFQKTVTAV
              170       180       190       200       210       220

              250       260       270       280       290       300
pF1KB6 ASLLKGRQGIYTENERRMGAVIKIRFFKIMLVLIICWLSNIINESLLFYLEMQTDINGGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ASLLKGRQGIYTENERRMGAVIKIRFFKIMLVLIICWLSNIINESLLFYLEMQTDINGGS
              230       240       250       260       270       280

              310       320       330       340       350       360
pF1KB6 LKPVRTAAKTTWFIMGILNPAQGFLLSLAFYGWTGCSLGFQSPRKEIQWESLTTSAAEGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LKPVRTAAKTTWFIMGILNPAQGFLLSLAFYGWTGCSLGFQSPRKEIQWESLTTSAAEGA
              290       300       310       320       330       340

              370       380       390       400       410       420
pF1KB6 HPSPLMPHENPASGKVSQVGGQTSDEALSMLSEGSDASTIEIHTASESCNKNEGDPALPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 HPSPLMPHENPASGKVSQVGGQTSDEALSMLSEGSDASTIEIHTASESCNKNEGDPALPT
              350       360       370       380       390       400

           
pF1KB6 HGDL
       ::::
CCDS14 HGDL
           




424 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 14:32:42 2016 done: Mon Nov  7 14:32:43 2016
 Total Scan time:  3.170 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]