FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6481, 311 aa
  1>>>pF1KB6481 311 - 311 aa - 311 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9227+/-0.000646; mu= 9.5023+/- 0.039
 mean_var=129.0043+/-26.420, 0's: 0 Z-trim(115.7): 75  B-trim: 0 in 0/52
 Lambda= 0.112920
 statistics sampled from 16153 (16237) to 16153 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.817), E-opt: 0.2 (0.499), width:  16
 Scan time:  2.970

The best scores are:                                      opt bits E(32554)
CCDS12039.1 RNF126 gene_id:55658|Hs108|chr19       ( 311) 2199 368.6 3.4e-102
CCDS72863.1 RNF115 gene_id:27246|Hs108|chr1        ( 304)  720 127.7 1.1e-29


>>CCDS12039.1 RNF126 gene_id:55658|Hs108|chr19            (311 aa)
 initn: 2199 init1: 2199 opt: 2199  Z-score: 1948.2  bits: 368.6 E(32554): 3.4e-102
Smith-Waterman score: 2199; 100.0% identity (100.0% similar) in 311 aa overlap (1-311:1-311)

               10        20        30        40        50        60
pF1KB6 MAEASPHPGRYFCHCCSVEIVPRLPDYICPRCESGFIEELPEETRSTENGSAPSTAPTDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MAEASPHPGRYFCHCCSVEIVPRLPDYICPRCESGFIEELPEETRSTENGSAPSTAPTDQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 SRPPLEHVDQHLFTLPQGYGQFAFGIFDDSFEIPTFPPGAQADDGRDPESRRERDHPSRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SRPPLEHVDQHLFTLPQGYGQFAFGIFDDSFEIPTFPPGAQADDGRDPESRRERDHPSRH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 RYGARQPRARLTTRRATGRHEGVPTLEGIIQQLVNGIITPATIPSLGPWGVLHSNPMDYA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RYGARQPRARLTTRRATGRHEGVPTLEGIIQQLVNGIITPATIPSLGPWGVLHSNPMDYA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 WGANGLDAIITQLLNQFENTGPPPADKEKIQALPTVPVTEEHVGSGLECPVCKDDYALGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 WGANGLDAIITQLLNQFENTGPPPADKEKIQALPTVPVTEEHVGSGLECPVCKDDYALGE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 RVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSLTGQNTATNPPGLTGVSFSSSSSSSSSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSLTGQNTATNPPGLTGVSFSSSSSSSSSS
              250       260       270       280       290       300

              310 
pF1KB6 SPSNENATSNS
       :::::::::::
CCDS12 SPSNENATSNS
              310 

>>CCDS72863.1 RNF115 gene_id:27246|Hs108|chr1             (304 aa)
 initn: 832 init1: 605 opt: 720  Z-score: 646.1  bits: 127.7 E(32554): 1.1e-29
Smith-Waterman score: 875; 47.1% identity (69.0% similar) in 306 aa overlap (10-306:19-296)

                        10        20        30        40        50 
pF1KB6          MAEASPHPGRYFCHCCSVEIVPRLPDYICPRCESGFIEELPEETRSTENGS
                         :.::: :. :. :.::.:::::::::::::. ...    .:.
CCDS72 MAEASAAGADSGAAVAAHRFFCHFCKGEVSPKLPEYICPRCESGFIEEVTDDSSFLGGGG
               10        20        30        40        50        60

              60         70        80        90       100       110
pF1KB6 APSTAPTDQSRPPLE-HVDQHLFTLPQGYGQFAFGIFDDSFEIPTFPPGAQADDGRDPES
       .     :      :  :.:. .:             :.: :. : .  .   .:.:    
CCDS72 SRIDNTTTTHFAELWGHLDHTMF-------------FQD-FR-PFLSSSPLDQDNRA---
               70        80                       90       100     

              120        130          140       150       160      
pF1KB6 RRERDHPSRHRY-GARQPRARLTTR---RATGRHEGVPTLEGIIQQLVNGIITPATIP-S
         :: : ..  . ::: ::  :  :   :...: .  :..:::.:..  :... ..:: :
CCDS72 -NERGHQTHTDFWGARPPRLPLGRRYRSRGSSRPDRSPAIEGILQHIFAGFFANSAIPGS
             110       120       130       140       150       160 

            170       180       190       200       210       220  
pF1KB6 LGP--W-GVLHSNPMDYAWGANGLDAIITQLLNQFENTGPPPADKEKIQALPTVPVTEEH
         :  : :.::::: ::::: .:::::.::::.:.::::::::::::: .:::: ::.:.
CCDS72 PHPFSWSGMLHSNPGDYAWGQTGLDAIVTQLLGQLENTGPPPADKEKITSLPTVTVTQEQ
             170       180       190       200       210       220 

            230       240       250       260       270       280  
pF1KB6 VGSGLECPVCKDDYALGERVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSLTGQNTATNP
       :  ::::::::.::.. :.::::::::.::..::::::: ::.::::::::.:.... . 
CCDS72 VDMGLECPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSLNGEDSTRQ-
             230       240       250       260       270       280 

            290       300       310    
pF1KB6 PGLTGVSFSSSSSSSSSSSPSNENATSNS   
               :.:. .:.:.  ::..        
CCDS72 --------SQSTEASASNRFSNDSQLHDRWTF
                      290       300    




311 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 17:05:51 2016 done: Mon Nov  7 17:05:51 2016
 Total Scan time:  2.970 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]