Result of FASTA (omim) for
pFN21AB6449
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6449, 317 aa
1>>>pF1KB6449 317 - 317 aa - 317 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.5655+/-0.00042; mu= 10.4510+/- 0.026
mean_var=177.2545+/-36.773, 0's: 0 Z-trim(116.9): 510 B-trim: 83 in 1/50
Lambda= 0.096333
statistics sampled from 27726 (28360) to 27726 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.709), E-opt: 0.2 (0.333), width: 16
Scan time: 7.040
The best scores are: opt bits E(85289)
NP_065390 (OMIM: 164008,612132) NF-kappa-B inhibit ( 317) 2141 309.9 4.4e-84
NP_004547 (OMIM: 604548) NF-kappa-B inhibitor epsi ( 500) 483 79.7 1.4e-14
XP_011530310 (OMIM: 164011,616576) PREDICTED: nucl ( 916) 458 76.5 2.2e-13
NP_001158884 (OMIM: 164011,616576) nuclear factor ( 968) 458 76.6 2.3e-13
NP_001306155 (OMIM: 164011,616576) nuclear factor ( 968) 458 76.6 2.3e-13
NP_003989 (OMIM: 164011,616576) nuclear factor NF- ( 969) 458 76.6 2.3e-13
XP_011530308 (OMIM: 164011,616576) PREDICTED: nucl ( 976) 458 76.6 2.3e-13
XP_011538132 (OMIM: 164012,615577) PREDICTED: nucl ( 755) 396 67.8 7.8e-11
XP_011538133 (OMIM: 164012,615577) PREDICTED: nucl ( 755) 396 67.8 7.8e-11
NP_001309864 (OMIM: 164012,615577) nuclear factor ( 858) 396 67.9 8.5e-11
NP_002493 (OMIM: 164012,615577) nuclear factor NF- ( 899) 396 67.9 8.7e-11
NP_001248332 (OMIM: 164012,615577) nuclear factor ( 899) 396 67.9 8.7e-11
NP_001275653 (OMIM: 164012,615577) nuclear factor ( 899) 396 67.9 8.7e-11
NP_001070962 (OMIM: 164012,615577) nuclear factor ( 900) 396 67.9 8.7e-11
NP_001309863 (OMIM: 164012,615577) nuclear factor ( 900) 396 67.9 8.7e-11
XP_016871767 (OMIM: 164012,615577) PREDICTED: nucl (1081) 396 68.0 9.8e-11
XP_016882599 (OMIM: 109560) PREDICTED: B-cell lymp ( 356) 363 62.8 1.2e-09
XP_011525502 (OMIM: 109560) PREDICTED: B-cell lymp ( 378) 363 62.9 1.2e-09
XP_016882598 (OMIM: 109560) PREDICTED: B-cell lymp ( 434) 363 62.9 1.3e-09
NP_005169 (OMIM: 109560) B-cell lymphoma 3 protein ( 454) 363 63.0 1.4e-09
XP_011525499 (OMIM: 109560) PREDICTED: B-cell lymp ( 539) 363 63.1 1.5e-09
XP_011525500 (OMIM: 109560) PREDICTED: B-cell lymp ( 696) 363 63.2 1.8e-09
XP_016865994 (OMIM: 610583) PREDICTED: ankyrin rep ( 659) 287 52.6 2.6e-06
XP_011533901 (OMIM: 610583) PREDICTED: ankyrin rep ( 694) 286 52.5 3e-06
XP_006723290 (OMIM: 604495) PREDICTED: NF-kappa-B ( 351) 280 51.3 3.4e-06
NP_001229743 (OMIM: 610583) ankyrin repeat domain- ( 663) 269 50.1 1.5e-05
XP_011533902 (OMIM: 610583) PREDICTED: ankyrin rep ( 663) 269 50.1 1.5e-05
NP_001230045 (OMIM: 604495) NF-kappa-B inhibitor b ( 270) 263 48.8 1.5e-05
XP_006723289 (OMIM: 604495) PREDICTED: NF-kappa-B ( 324) 263 48.9 1.7e-05
NP_002494 (OMIM: 604495) NF-kappa-B inhibitor beta ( 356) 263 48.9 1.8e-05
XP_011512738 (OMIM: 608994) PREDICTED: ankyrin rep (1100) 269 50.4 2e-05
XP_005249021 (OMIM: 608994) PREDICTED: ankyrin rep (1155) 269 50.4 2.1e-05
XP_006715099 (OMIM: 608994) PREDICTED: ankyrin rep (1156) 269 50.4 2.1e-05
XP_011512735 (OMIM: 608994) PREDICTED: ankyrin rep (1162) 269 50.4 2.1e-05
XP_011512734 (OMIM: 608994) PREDICTED: ankyrin rep (1165) 269 50.4 2.1e-05
XP_011512733 (OMIM: 608994) PREDICTED: ankyrin rep (1166) 269 50.4 2.1e-05
NP_001138994 (OMIM: 606586) ankycorbin isoform b [ ( 951) 266 49.9 2.5e-05
XP_016864824 (OMIM: 606586) PREDICTED: ankycorbin ( 951) 266 49.9 2.5e-05
XP_016865992 (OMIM: 610583) PREDICTED: ankyrin rep ( 661) 262 49.1 2.9e-05
XP_011533899 (OMIM: 610583) PREDICTED: ankyrin rep ( 719) 262 49.2 3.1e-05
NP_065815 (OMIM: 612184) caskin-1 [Homo sapiens] (1431) 266 50.1 3.2e-05
XP_011512327 (OMIM: 606586) PREDICTED: ankycorbin ( 957) 263 49.5 3.3e-05
XP_006714532 (OMIM: 606586) PREDICTED: ankycorbin ( 980) 263 49.5 3.4e-05
XP_011512323 (OMIM: 606586) PREDICTED: ankycorbin ( 980) 263 49.5 3.4e-05
XP_011512324 (OMIM: 606586) PREDICTED: ankycorbin ( 980) 263 49.5 3.4e-05
NP_056392 (OMIM: 606586) ankycorbin isoform a [Hom ( 980) 263 49.5 3.4e-05
XP_011512320 (OMIM: 606586) PREDICTED: ankycorbin ( 980) 263 49.5 3.4e-05
XP_011512322 (OMIM: 606586) PREDICTED: ankycorbin ( 980) 263 49.5 3.4e-05
NP_001138992 (OMIM: 606586) ankycorbin isoform a [ ( 980) 263 49.5 3.4e-05
NP_001138993 (OMIM: 606586) ankycorbin isoform a [ ( 980) 263 49.5 3.4e-05
>>NP_065390 (OMIM: 164008,612132) NF-kappa-B inhibitor a (317 aa)
initn: 2141 init1: 2141 opt: 2141 Z-score: 1630.5 bits: 309.9 E(85289): 4.4e-84
Smith-Waterman score: 2141; 100.0% identity (100.0% similar) in 317 aa overlap (1-317:1-317)
10 20 30 40 50 60
pF1KB6 MFQAAERPQEWAMEGPRDGLKKERLLDDRHDSGLDSMKDEEYEQMVKELQEIRLEPQEVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 MFQAAERPQEWAMEGPRDGLKKERLLDDRHDSGLDSMKDEEYEQMVKELQEIRLEPQEVP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 RGSEPWKQQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 RGSEPWKQQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 TNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 TNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFTE
250 260 270 280 290 300
310
pF1KB6 DELPYDDCVFGGQRLTL
:::::::::::::::::
NP_065 DELPYDDCVFGGQRLTL
310
>>NP_004547 (OMIM: 604548) NF-kappa-B inhibitor epsilon (500 aa)
initn: 457 init1: 237 opt: 483 Z-score: 382.9 bits: 79.7 E(85289): 1.4e-14
Smith-Waterman score: 483; 37.6% identity (65.6% similar) in 250 aa overlap (70-315:255-496)
40 50 60 70 80 90
pF1KB6 EEYEQMVKELQEIRLEPQEVPRGSEPWKQQLTEDGDSFLHLAIIHEEKALTMEVIRQVKG
..::::...:::.::: :. . . .
NP_004 GGPEAEDPAPRLPLPHVGALSPQQLEALTYISEDGDTLVHLAVIHEAPAVLLCCLALLPQ
230 240 250 260 270 280
100 110 120 130 140 150
pF1KB6 DLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLAS
.. :..:::: :: ::::: .:: ..::. : . :.: .:.: ::.::.. ::
NP_004 EV--LDIQNNLYQTALHLAVHLDQPGAVRALVLKGASRALQDRHGDTALHVACQRQHLAC
290 300 310 320 330 340
160 170 180 190 200 210
pF1KB6 VGVLTQSCTTPHL---HSI-LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPC
. : .. : ::. :. :..: .:::.:... ..:::. :::...::
NP_004 ARCLLEGRPEPGRGTSHSLDLQLQNWQGLACLHIATLQKNQPLMELLLRNGADIDVQEGT
350 360 370 380 390 400
220 230 240 250 260 270
pF1KB6 NGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE
.:.:::::::. :. ::..::. ::.:. .: .: .:. :: :.. : . .
NP_004 SGKTALHLAVETQERGLVQFLLQAGAQVDARMLNGCTPLHLAAGRGLMGISSTLCKAGAD
410 420 430 440 450 460
280 290 300 310
pF1KB6 NLQMLPESEDEESYDTESEFTEFTEDELPYDDCVFGGQRLTL
.: : . ::: : ...:: . ::.:: ..:. :
NP_004 SL--LRNVEDE----TPQDLTEESLVLLPFDDLKISGKLLLCTD
470 480 490 500
>>XP_011530310 (OMIM: 164011,616576) PREDICTED: nuclear (916 aa)
initn: 434 init1: 164 opt: 458 Z-score: 361.1 bits: 76.5 E(85289): 2.2e-13
Smith-Waterman score: 458; 40.9% identity (65.1% similar) in 235 aa overlap (72-302:489-715)
50 60 70 80 90 100
pF1KB6 YEQMVKELQEIRLEPQEVPRGSEPWKQQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDL
:.::: ::::::: .. :. .... ..: .
XP_011 RHANALFDYAVTGDVKMLLAVQRHLTAVQDENGDSVLHLAIIHLHSQLVRDLLEVTSGLI
460 470 480 490 500 510
110 120 130 140 150
pF1KB6 A--FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLAS
. ..:..:.: ::::::::::.: ...: :: :: : : : ::. :::: ..:
XP_011 SDDIINMRNDLYQTPLHLAVITKQEDVVEDLLRAGADLSLLDRLGNSVLHLAAKEGHDKV
520 530 540 550 560 570
160 170 180 190 200 210
pF1KB6 VGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRT
...: . . : : : .: . .::: . . : . :::. :::::::: .:::
XP_011 LSILLKHKKAALL---LDHPNGDGLNAIHLAMMSNSLPCLLLLVAAGADVNAQEQKSGRT
580 590 600 610 620 630
220 230 240 250 260 270
pF1KB6 ALHLAVDLQNPDLVS-LLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQ
::::::. .: .:.. :::. : :. .::.: .: ... :: :::. : .
XP_011 ALHLAVEHDNISLAGCLLLEGDAHVDSTTYDGTTPLHIAAGRGSTRLAALLKAAGAD---
640 650 660 670 680 690
280 290 300 310
pF1KB6 MLPESEDEES-YDTESEFTEFTEDELPYDDCVFGGQRLTL
: :. : :: .. . . :::
XP_011 --PLVENFEPLYDLDDSWENAGEDEGVVPGTTPLDMATSWQVFDILNGKPYEPEFTSDDL
700 710 720 730 740 750
>>NP_001158884 (OMIM: 164011,616576) nuclear factor NF-k (968 aa)
initn: 434 init1: 164 opt: 458 Z-score: 360.8 bits: 76.6 E(85289): 2.3e-13
Smith-Waterman score: 458; 40.9% identity (65.1% similar) in 235 aa overlap (72-302:541-767)
50 60 70 80 90 100
pF1KB6 YEQMVKELQEIRLEPQEVPRGSEPWKQQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDL
:.::: ::::::: .. :. .... ..: .
NP_001 RHANALFDYAVTGDVKMLLAVQRHLTAVQDENGDSVLHLAIIHLHSQLVRDLLEVTSGLI
520 530 540 550 560 570
110 120 130 140 150
pF1KB6 A--FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLAS
. ..:..:.: ::::::::::.: ...: :: :: : : : ::. :::: ..:
NP_001 SDDIINMRNDLYQTPLHLAVITKQEDVVEDLLRAGADLSLLDRLGNSVLHLAAKEGHDKV
580 590 600 610 620 630
160 170 180 190 200 210
pF1KB6 VGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRT
...: . . : : : .: . .::: . . : . :::. :::::::: .:::
NP_001 LSILLKHKKAALL---LDHPNGDGLNAIHLAMMSNSLPCLLLLVAAGADVNAQEQKSGRT
640 650 660 670 680
220 230 240 250 260 270
pF1KB6 ALHLAVDLQNPDLVS-LLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQ
::::::. .: .:.. :::. : :. .::.: .: ... :: :::. : .
NP_001 ALHLAVEHDNISLAGCLLLEGDAHVDSTTYDGTTPLHIAAGRGSTRLAALLKAAGAD---
690 700 710 720 730 740
280 290 300 310
pF1KB6 MLPESEDEES-YDTESEFTEFTEDELPYDDCVFGGQRLTL
: :. : :: .. . . :::
NP_001 --PLVENFEPLYDLDDSWENAGEDEGVVPGTTPLDMATSWQVFDILNGKPYEPEFTSDDL
750 760 770 780 790 800
>>NP_001306155 (OMIM: 164011,616576) nuclear factor NF-k (968 aa)
initn: 434 init1: 164 opt: 458 Z-score: 360.8 bits: 76.6 E(85289): 2.3e-13
Smith-Waterman score: 458; 40.9% identity (65.1% similar) in 235 aa overlap (72-302:541-767)
50 60 70 80 90 100
pF1KB6 YEQMVKELQEIRLEPQEVPRGSEPWKQQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDL
:.::: ::::::: .. :. .... ..: .
NP_001 RHANALFDYAVTGDVKMLLAVQRHLTAVQDENGDSVLHLAIIHLHSQLVRDLLEVTSGLI
520 530 540 550 560 570
110 120 130 140 150
pF1KB6 A--FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLAS
. ..:..:.: ::::::::::.: ...: :: :: : : : ::. :::: ..:
NP_001 SDDIINMRNDLYQTPLHLAVITKQEDVVEDLLRAGADLSLLDRLGNSVLHLAAKEGHDKV
580 590 600 610 620 630
160 170 180 190 200 210
pF1KB6 VGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRT
...: . . : : : .: . .::: . . : . :::. :::::::: .:::
NP_001 LSILLKHKKAALL---LDHPNGDGLNAIHLAMMSNSLPCLLLLVAAGADVNAQEQKSGRT
640 650 660 670 680
220 230 240 250 260 270
pF1KB6 ALHLAVDLQNPDLVS-LLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQ
::::::. .: .:.. :::. : :. .::.: .: ... :: :::. : .
NP_001 ALHLAVEHDNISLAGCLLLEGDAHVDSTTYDGTTPLHIAAGRGSTRLAALLKAAGAD---
690 700 710 720 730 740
280 290 300 310
pF1KB6 MLPESEDEES-YDTESEFTEFTEDELPYDDCVFGGQRLTL
: :. : :: .. . . :::
NP_001 --PLVENFEPLYDLDDSWENAGEDEGVVPGTTPLDMATSWQVFDILNGKPYEPEFTSDDL
750 760 770 780 790 800
>>NP_003989 (OMIM: 164011,616576) nuclear factor NF-kapp (969 aa)
initn: 434 init1: 164 opt: 458 Z-score: 360.8 bits: 76.6 E(85289): 2.3e-13
Smith-Waterman score: 458; 40.9% identity (65.1% similar) in 235 aa overlap (72-302:542-768)
50 60 70 80 90 100
pF1KB6 YEQMVKELQEIRLEPQEVPRGSEPWKQQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDL
:.::: ::::::: .. :. .... ..: .
NP_003 RHANALFDYAVTGDVKMLLAVQRHLTAVQDENGDSVLHLAIIHLHSQLVRDLLEVTSGLI
520 530 540 550 560 570
110 120 130 140 150
pF1KB6 A--FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLAS
. ..:..:.: ::::::::::.: ...: :: :: : : : ::. :::: ..:
NP_003 SDDIINMRNDLYQTPLHLAVITKQEDVVEDLLRAGADLSLLDRLGNSVLHLAAKEGHDKV
580 590 600 610 620 630
160 170 180 190 200 210
pF1KB6 VGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRT
...: . . : : : .: . .::: . . : . :::. :::::::: .:::
NP_003 LSILLKHKKAALL---LDHPNGDGLNAIHLAMMSNSLPCLLLLVAAGADVNAQEQKSGRT
640 650 660 670 680
220 230 240 250 260 270
pF1KB6 ALHLAVDLQNPDLVS-LLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQ
::::::. .: .:.. :::. : :. .::.: .: ... :: :::. : .
NP_003 ALHLAVEHDNISLAGCLLLEGDAHVDSTTYDGTTPLHIAAGRGSTRLAALLKAAGAD---
690 700 710 720 730 740
280 290 300 310
pF1KB6 MLPESEDEES-YDTESEFTEFTEDELPYDDCVFGGQRLTL
: :. : :: .. . . :::
NP_003 --PLVENFEPLYDLDDSWENAGEDEGVVPGTTPLDMATSWQVFDILNGKPYEPEFTSDDL
750 760 770 780 790 800
>>XP_011530308 (OMIM: 164011,616576) PREDICTED: nuclear (976 aa)
initn: 434 init1: 164 opt: 458 Z-score: 360.8 bits: 76.6 E(85289): 2.3e-13
Smith-Waterman score: 458; 40.9% identity (65.1% similar) in 235 aa overlap (72-302:549-775)
50 60 70 80 90 100
pF1KB6 YEQMVKELQEIRLEPQEVPRGSEPWKQQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDL
:.::: ::::::: .. :. .... ..: .
XP_011 RHANALFDYAVTGDVKMLLAVQRHLTAVQDENGDSVLHLAIIHLHSQLVRDLLEVTSGLI
520 530 540 550 560 570
110 120 130 140 150
pF1KB6 A--FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLAS
. ..:..:.: ::::::::::.: ...: :: :: : : : ::. :::: ..:
XP_011 SDDIINMRNDLYQTPLHLAVITKQEDVVEDLLRAGADLSLLDRLGNSVLHLAAKEGHDKV
580 590 600 610 620 630
160 170 180 190 200 210
pF1KB6 VGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRT
...: . . : : : .: . .::: . . : . :::. :::::::: .:::
XP_011 LSILLKHKKAALL---LDHPNGDGLNAIHLAMMSNSLPCLLLLVAAGADVNAQEQKSGRT
640 650 660 670 680 690
220 230 240 250 260 270
pF1KB6 ALHLAVDLQNPDLVS-LLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQ
::::::. .: .:.. :::. : :. .::.: .: ... :: :::. : .
XP_011 ALHLAVEHDNISLAGCLLLEGDAHVDSTTYDGTTPLHIAAGRGSTRLAALLKAAGAD---
700 710 720 730 740 750
280 290 300 310
pF1KB6 MLPESEDEES-YDTESEFTEFTEDELPYDDCVFGGQRLTL
: :. : :: .. . . :::
XP_011 --PLVENFEPLYDLDDSWENAGEDEGVVPGTTPLDMATSWQVFDILNGKPYEPEFTSDDL
760 770 780 790 800 810
>>XP_011538132 (OMIM: 164012,615577) PREDICTED: nuclear (755 aa)
initn: 385 init1: 178 opt: 396 Z-score: 315.5 bits: 67.8 E(85289): 7.8e-11
Smith-Waterman score: 399; 37.8% identity (63.4% similar) in 238 aa overlap (72-297:341-576)
50 60 70 80 90
pF1KB6 YEQMVKELQEIRLEPQEVPRGSEPWKQQLTEDGDSFLHLAIIHEEKALTMEVIRQVKG--
:.::. ::::::: . .. ... ..
XP_011 RSARALLDYGVTADARALLAGQRHLLTAQDENGDTPLHLAIIHGQTSVIEQIVYVIHHAQ
320 330 340 350 360 370
100 110 120 130 140 150
pF1KB6 DLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLAS
::. .:. :.:.::::::::::.: .. :: .: :: : : .:.. .::: . : :
XP_011 DLGVVNLTNHLHQTPLHLAVITGQTSVVSFLLRVGADPALLDRHGDSAMHLALRAGAGAP
380 390 400 410 420 430
160 170 180 190 200 210
pF1KB6 --VGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNG
. .: :: .: . ..:. ...: .::: ..:::. ::.:.: : .:
XP_011 ELLRALLQS-GAPAVPQLLHMPDFEGLYPVHLAVRARSPECLDLLVDSGAEVEATERQGG
440 450 460 470 480
220 230 240 250 260 270
pF1KB6 RTALHLAVDLQNPDLVS-LLLKCGADVNRVTYQGYSPYQLT--WGRPS-TRIQQQLG-QL
:::::::..... ::. :. : :.:: :. : .: .:. : :. ::. . : ..
XP_011 RTALHLATEMEELGLVTHLVTKLRANVNARTFAGNTPLHLAAGLGYPTLTRLLLKAGADI
490 500 510 520 530 540
280 290 300 310
pF1KB6 TLEN---LQMLPESEDEESYDTESEFTEFTEDELPYDDCVFGGQRLTL
:: : :: .: :..:: :
XP_011 HAENEEPLCPLPSPPTSDS-DSDSEGPEKDTRSSFRGHTPLDLTCSTKVKTLLLNAAQNT
550 560 570 580 590 600
>>XP_011538133 (OMIM: 164012,615577) PREDICTED: nuclear (755 aa)
initn: 385 init1: 178 opt: 396 Z-score: 315.5 bits: 67.8 E(85289): 7.8e-11
Smith-Waterman score: 399; 37.8% identity (63.4% similar) in 238 aa overlap (72-297:341-576)
50 60 70 80 90
pF1KB6 YEQMVKELQEIRLEPQEVPRGSEPWKQQLTEDGDSFLHLAIIHEEKALTMEVIRQVKG--
:.::. ::::::: . .. ... ..
XP_011 RSARALLDYGVTADARALLAGQRHLLTAQDENGDTPLHLAIIHGQTSVIEQIVYVIHHAQ
320 330 340 350 360 370
100 110 120 130 140 150
pF1KB6 DLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLAS
::. .:. :.:.::::::::::.: .. :: .: :: : : .:.. .::: . : :
XP_011 DLGVVNLTNHLHQTPLHLAVITGQTSVVSFLLRVGADPALLDRHGDSAMHLALRAGAGAP
380 390 400 410 420 430
160 170 180 190 200 210
pF1KB6 --VGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNG
. .: :: .: . ..:. ...: .::: ..:::. ::.:.: : .:
XP_011 ELLRALLQS-GAPAVPQLLHMPDFEGLYPVHLAVRARSPECLDLLVDSGAEVEATERQGG
440 450 460 470 480
220 230 240 250 260 270
pF1KB6 RTALHLAVDLQNPDLVS-LLLKCGADVNRVTYQGYSPYQLT--WGRPS-TRIQQQLG-QL
:::::::..... ::. :. : :.:: :. : .: .:. : :. ::. . : ..
XP_011 RTALHLATEMEELGLVTHLVTKLRANVNARTFAGNTPLHLAAGLGYPTLTRLLLKAGADI
490 500 510 520 530 540
280 290 300 310
pF1KB6 TLEN---LQMLPESEDEESYDTESEFTEFTEDELPYDDCVFGGQRLTL
:: : :: .: :..:: :
XP_011 HAENEEPLCPLPSPPTSDS-DSDSEGPEKDTRSSFRGHTPLDLTCSTKVKTLLLNAAQNT
550 560 570 580 590 600
>>NP_001309864 (OMIM: 164012,615577) nuclear factor NF-k (858 aa)
initn: 385 init1: 178 opt: 396 Z-score: 314.9 bits: 67.9 E(85289): 8.5e-11
Smith-Waterman score: 399; 37.8% identity (63.4% similar) in 238 aa overlap (72-297:444-679)
50 60 70 80 90
pF1KB6 YEQMVKELQEIRLEPQEVPRGSEPWKQQLTEDGDSFLHLAIIHEEKALTMEVIRQVKG--
:.::. ::::::: . .. ... ..
NP_001 RSARALLDYGVTADARALLAGQRHLLTAQDENGDTPLHLAIIHGQTSVIEQIVYVIHHAQ
420 430 440 450 460 470
100 110 120 130 140 150
pF1KB6 DLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLAS
::. .:. :.:.::::::::::.: .. :: .: :: : : .:.. .::: . : :
NP_001 DLGVVNLTNHLHQTPLHLAVITGQTSVVSFLLRVGADPALLDRHGDSAMHLALRAGAGAP
480 490 500 510 520 530
160 170 180 190 200 210
pF1KB6 --VGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNG
. .: :: .: . ..:. ...: .::: ..:::. ::.:.: : .:
NP_001 ELLRALLQS-GAPAVPQLLHMPDFEGLYPVHLAVRARSPECLDLLVDSGAEVEATERQGG
540 550 560 570 580 590
220 230 240 250 260 270
pF1KB6 RTALHLAVDLQNPDLVS-LLLKCGADVNRVTYQGYSPYQLT--WGRPS-TRIQQQLG-QL
:::::::..... ::. :. : :.:: :. : .: .:. : :. ::. . : ..
NP_001 RTALHLATEMEELGLVTHLVTKLRANVNARTFAGNTPLHLAAGLGYPTLTRLLLKAGADI
600 610 620 630 640 650
280 290 300 310
pF1KB6 TLEN---LQMLPESEDEESYDTESEFTEFTEDELPYDDCVFGGQRLTL
:: : :: .: :..:: :
NP_001 HAENEEPLCPLPSPPTSDS-DSDSEGPEKDTRSSFRGHTPLDLTCSTKVKTLLLNAAQNT
660 670 680 690 700 710
317 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 17:31:52 2016 done: Fri Nov 4 17:31:54 2016
Total Scan time: 7.040 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]