FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6316, 281 aa
  1>>>pF1KB6316 281 - 281 aa - 281 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9952+/-0.00104; mu= 8.0757+/- 0.063
 mean_var=150.0839+/-32.784, 0's: 0 Z-trim(107.9): 98  B-trim: 520 in 1/50
 Lambda= 0.104690
 statistics sampled from 9781 (9880) to 9781 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.651), E-opt: 0.2 (0.303), width:  16
 Scan time:  1.770

The best scores are:                                      opt bits E(32554)
CCDS46635.1 RBM11 gene_id:54033|Hs108|chr21        ( 281) 1908 299.8 1.4e-81
CCDS66233.1 RBM7 gene_id:10179|Hs108|chr11         ( 267)  428 76.3 2.7e-14
CCDS8370.1 RBM7 gene_id:10179|Hs108|chr11          ( 266)  424 75.7 4.1e-14


>>CCDS46635.1 RBM11 gene_id:54033|Hs108|chr21             (281 aa)
 initn: 1908 init1: 1908 opt: 1908  Z-score: 1578.0  bits: 299.8 E(32554): 1.4e-81
Smith-Waterman score: 1908; 100.0% identity (100.0% similar) in 281 aa overlap (1-281:1-281)

               10        20        30        40        50        60
pF1KB6 MFPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MFPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 ESVSYAIALLNGIRLYGRPINVQYRFGSSRSSEPANQSFESCVKINSHNYRNEEMLVGRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ESVSYAIALLNGIRLYGRPINVQYRFGSSRSSEPANQSFESCVKINSHNYRNEEMLVGRS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 SFPMQYFPINNTSLPQEYFLFQKMQWHVYNPVLQLPYYEMTAPLPNSASVSSSLNHVPDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SFPMQYFPINNTSLPQEYFLFQKMQWHVYNPVLQLPYYEMTAPLPNSASVSSSLNHVPDL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 EAGPSSYKWTHQQPSDSDLYQMTAPLPNSASVSSSLNHVPDLEAGPSSYKWTHQQPSDSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 EAGPSSYKWTHQQPSDSDLYQMTAPLPNSASVSSSLNHVPDLEAGPSSYKWTHQQPSDSD
              190       200       210       220       230       240

              250       260       270       280 
pF1KB6 LYQMNKRKRQKQTSDSDSSTDNNRGNECSQKFRKSKKKKRY
       :::::::::::::::::::::::::::::::::::::::::
CCDS46 LYQMNKRKRQKQTSDSDSSTDNNRGNECSQKFRKSKKKKRY
              250       260       270       280 

>>CCDS66233.1 RBM7 gene_id:10179|Hs108|chr11              (267 aa)
 initn: 426 init1: 394 opt: 428  Z-score: 370.2  bits: 76.3 E(32554): 2.7e-14
Smith-Waterman score: 431; 35.1% identity (60.7% similar) in 285 aa overlap (1-276:1-266)

               10        20        30        40        50        60
pF1KB6 MFPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHP
       :  :  :::::.::::::..: ::.:.::: ::::. :: : ::..::::.:.:: ::: 
CCDS66 MGAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHE
               10        20        30        40        50        60

               70        80        90             100       110    
pF1KB6 ESVSYAIALLNGIRLYGRPINVQYRFGSSRSSEPANQSF------ESCVKINSHNYRNEE
        :: ::. :::::.::::::..:.: :::.. . .. :.      .:    .: . : :.
CCDS66 VSVPYAMNLLNGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGNSSPTSTSPSSRYER
               70        80        90       100       110       120

          120       130       140       150        160         170 
pF1KB6 MLVGRSSFPMQYFPINNTSLPQEYFLFQKMQWHVYNPVL-QLPYYEM--TAPLPNSASVS
        . . .:   : .   . : :..   ::..   :.: .: :. :     ..:: .:.   
CCDS66 TMDNMTS-SAQIIQ-RSFSSPEN---FQRQA--VMNSALRQMSYGGKFGSSPLDQSGFSP
               130        140            150       160       170   

             180       190       200       210       220       230 
pF1KB6 SSLNHVPDLEAGPSSYKWTHQQPSDSDLYQMTAPLPNSASVSSSLNHVPDLEAGPSSYKW
       :  .:  ... . :: .: .  ::..   .:..  :  :.   :       :   ...  
CCDS66 SVQSHSHSFNQSSSS-QWRQGTPSSQRKVRMNS-YPYLADRHYSR------EQRYTDHGS
           180        190       200        210             220     

             240       250       260       270       280 
pF1KB6 THQQPSDSDLYQMNKRKRQKQTSDSDSSTDNNRGNECSQKFRKSKKKKRY
        :.  .  : . .. :...  . : :.  :..: .    :.:.:.     
CCDS66 DHHYRGKRDDFFYEDRNHDDWSHDYDNRRDSSRDG----KWRSSRH    
         230       240       250       260               

>>CCDS8370.1 RBM7 gene_id:10179|Hs108|chr11               (266 aa)
 initn: 426 init1: 394 opt: 424  Z-score: 366.9  bits: 75.7 E(32554): 4.1e-14
Smith-Waterman score: 427; 34.5% identity (60.2% similar) in 284 aa overlap (1-276:1-265)

               10        20        30        40        50        60
pF1KB6 MFPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHP
       :  :  :::::.::::::..: ::.:.::: ::::. :: : ::..::::.:.:: ::: 
CCDS83 MGAAAAEADRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHE
               10        20        30        40        50        60

               70        80        90       100            110     
pF1KB6 ESVSYAIALLNGIRLYGRPINVQYRFGSSRSSEPANQSFE-----SCVKINSHNYRNEEM
        :: ::. :::::.::::::..:.: :::.. . .. :.      .    ..   : :. 
CCDS83 VSVPYAMNLLNGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGNSSPTSTSPSRYERT
               70        80        90       100       110       120

         120       130       140       150        160         170  
pF1KB6 LVGRSSFPMQYFPINNTSLPQEYFLFQKMQWHVYNPVL-QLPYYEM--TAPLPNSASVSS
       . . .:   : .   . : :..   ::..   :.: .: :. :     ..:: .:.   :
CCDS83 MDNMTS-SAQIIQ-RSFSSPEN---FQRQA--VMNSALRQMSYGGKFGSSPLDQSGFSPS
               130        140            150       160       170   

            180       190       200       210       220       230  
pF1KB6 SLNHVPDLEAGPSSYKWTHQQPSDSDLYQMTAPLPNSASVSSSLNHVPDLEAGPSSYKWT
         .:  ... . :: .: .  ::..   .:..  :  :.   :       :   ...   
CCDS83 VQSHSHSFNQSSSS-QWRQGTPSSQRKVRMNS-YPYLADRHYSR------EQRYTDHGSD
           180        190       200        210             220     

            240       250       260       270       280 
pF1KB6 HQQPSDSDLYQMNKRKRQKQTSDSDSSTDNNRGNECSQKFRKSKKKKRY
       :.  .  : . .. :...  . : :.  :..: .    :.:.:.     
CCDS83 HHYRGKRDDFFYEDRNHDDWSHDYDNRRDSSRDG----KWRSSRH    
         230       240       250           260          




281 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 23:58:40 2016 done: Mon Nov  7 23:58:40 2016
 Total Scan time:  1.770 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]