FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6210, 722 aa
  1>>>pF1KB6210 722 - 722 aa - 722 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 15.3510+/-0.00107; mu= -23.3631+/- 0.064
 mean_var=770.5160+/-175.777, 0's: 0 Z-trim(118.8): 95  B-trim: 0 in 0/54
 Lambda= 0.046204
 statistics sampled from 19751 (19845) to 19751 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.839), E-opt: 0.2 (0.61), width:  16
 Scan time:  3.700

The best scores are:                                      opt bits E(32554)
CCDS9568.1 ZNF219 gene_id:51222|Hs108|chr14        ( 722) 5159 359.3 1.2e-98


>>CCDS9568.1 ZNF219 gene_id:51222|Hs108|chr14             (722 aa)
 initn: 5159 init1: 5159 opt: 5159  Z-score: 1884.4  bits: 359.3 E(32554): 1.2e-98
Smith-Waterman score: 5159; 99.9% identity (99.9% similar) in 722 aa overlap (1-722:1-722)

               10        20        30        40        50        60
pF1KB6 MEGSRPRAPSGHLAPSPPAFDGELDLQRYSNGPAVSAGSLGMGAVSWSESRAGERRFPCP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 MEGSRPRAPSGHLAPSPPAFDGELDLQRYSNGPAVSAGSLGMGAVSWSESRAGERRFPCP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 VCGKRFRFNSILALHLRAHPGAQAFQCPHCGHRAAQRALLRSHLRTHQPERPRSPAARLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 VCGKRFRFNSILALHLRAHPGAQAFQCPHCGHRAAQRALLRSHLRTHQPERPRSPAARLL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 LELEERALLREARLGRARSSGGMQATPATEGLARPQAPSSSAFRCPYCKGKFRTSAERER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 LELEERALLREARLGRARSSGGMQATPATEGLARPQAPSSSAFRCPYCKGKFRTSAERER
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 HLHILHRPWKCGLCSFGSSQEEELLHHSLTAHGAPERPLAATSAAPPPQPQPQPPPQPEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 HLHILHRPWKCGLCSFGSSQEEELLHHSLTAHGAPERPLAATSAAPPPQPQPQPPPQPEP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 RSVPQPEPEPEPEREATPTTAPAAPEEPPAPPEFRCQVCGQSFTQSWFLKGHMRKHKASF
       ::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::
CCDS95 RSVPQPEPEPEPEREATPTPAPAAPEEPPAPPEFRCQVCGQSFTQSWFLKGHMRKHKASF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 DHACPVCGRCFKEPWFLKNHMKVHASKLGPLRAPGPASGPARAPQPPDLGLLAYEPLGPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 DHACPVCGRCFKEPWFLKNHMKVHASKLGPLRAPGPASGPARAPQPPDLGLLAYEPLGPA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB6 LLLAPAPTPAERREPPSLLGYLSLRAGEGRPNGEGAEPGPGRSFGGFRPLSSALPARARR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 LLLAPAPTPAERREPPSLLGYLSLRAGEGRPNGEGAEPGPGRSFGGFRPLSSALPARARR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB6 HRAEEPEEEEEVVEAEEETWARGRSLGSLASLHPRPGEGPGHSASAAGAQARSTATQEEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 HRAEEPEEEEEVVEAEEETWARGRSLGSLASLHPRPGEGPGHSASAAGAQARSTATQEEN
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB6 GLLVGGTRPEGGRGATGKDCPFCGKSFRSAHHLKVHLRVHTGERPYKCPHCDYAGTQSGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 GLLVGGTRPEGGRGATGKDCPFCGKSFRSAHHLKVHLRVHTGERPYKCPHCDYAGTQSGS
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB6 LKYHLQRHHREQRSGAGPGPPPEPPPPSQRGSAPQSGAKPSPQPATWVEGASSPRPPSSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 LKYHLQRHHREQRSGAGPGPPPEPPPPSQRGSAPQSGAKPSPQPATWVEGASSPRPPSSG
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB6 AGPGSRRKPASPGRTLRNGRGGEAEPLDLSLRAGPGGEAGPGGALHRCLFCPFATGAPEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 AGPGSRRKPASPGRTLRNGRGGEAEPLDLSLRAGPGGEAGPGGALHRCLFCPFATGAPEL
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB6 MALHLQVHHSRRARGRRPPQADASPPYARVPSGETPPSPSQEGEEGSGLSRPGEAGLGGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 MALHLQVHHSRRARGRRPPQADASPPYARVPSGETPPSPSQEGEEGSGLSRPGEAGLGGQ
              670       680       690       700       710       720

         
pF1KB6 ER
       ::
CCDS95 ER
         




722 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 18:50:58 2016 done: Mon Nov  7 18:50:58 2016
 Total Scan time:  3.700 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]